ViewGene
Locus Name:
GeneID:
Location:

GeneID:1851
TrivialName: PA14_69870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69870
PAO1 Ortholog Locus:PA5292
Sequence Length:1050
Protein Length:349
Start: 6231471
Stop: 6230422
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08677.1|AE004941_10 (AE004941) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 349/349 (100%), Positives = 349/349 (100%)
Sequence:
ATGACCTTCGCCAAAGGAATACTCGCCGCGCTGGCGCTCGCCGCCGCAGTCGGCCAGGCCAGCGCCACCGAA
CTCGAGCACTGGCCGGCCCCCGCCGCCAGGCAACTGAATGCACTGATCGAGGCCAACGCGAACAAGGGCGCC
TACGCCGTGTTCGACATGGACAACACCAGCTATCGCTACGACCTGGAAGAATCGCTGCTGCCCTATCTGGAA
ATGAAGGGCGTGCTGACCCGCGACAGGCTCGACCCTTCGCTGAAACTGATCCCGTTCAAGGACCAGGCCGGG
CACAAGGAGAGCCTGTTCAGCTACTACTACCGGCTTTGCGAGATCGACGACATGGTCTGCTATCCCTGGGTC
GCCCAGGTGTTCTCAGGCTTCACCCTCAGGGAACTGAAGGGCTATGTCGACGAACTGATGGCCTACGGCAAG
CCGATCCCCGCCACCTATTACGACGGCGACAAGCTCGCCACGCTCGACGTCGAGCCGCCGCGCGTGTTCAGC
GGCCAGCGCGAGCTGTACAACAAGCTGATGGAAAACGGCATCGAGGTCTACGTGATCAGCGCGGCCCACGAG
GAACTGGTGCGGATGGTCGCGGCGGACCCCAGGTATGGCTACAACGCCAAGCCGGAGAACGTCATCGGCGTC
ACCACCCTGCTGAAGAACCGCAAGACCGGAGAGCTGACCACCGCGCGCAAGCAGATCGCCGAGGGCAAGTAC
GATCCCAAGGCCAACCTCGACCTGGAGGTGACCCCCTACCTGTGGACCCCGGCGACCTGGATGGCCGGCAAG
CAGGCTGCGATCCTCACCTACATCGACCGTTGGAAGCGGCCGATCCTGGTCGCCGGCGATACCCCGGACAGC
GACGGTTACATGCTGTTCAACGGCACCGCGGAAAACGGCGTGCACCTGTGGGTCAACCGCAAGGCCAAGTAC
ATGGAGCAGATCAACGGCATGATCAAGCAGCATTCCGCCGCCCAGGCCAAGGCCGGCCTGCCGGTGACGGCG
GACAGGAACTGGGTGATCGTCACCCCGGAGCAGATCCAGTAG
Translation:
MTFAKGILAALALAAAVGQASATELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLE
MKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGK
PIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGV
TTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDS
DGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ*
AnnotationID:1860GeneID:1851
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:47
Gene Name:pchP
Confidence Code:1
GeneProduct:phosphorylcholine phosphatase
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Massimelli, M.J., Beassoni, P., Forrellad, M., Barra, J.L., Garrido, M.N., Domenech, Carlos E., Lisa, A.T. (unpublished)


















    ReferenceID:3705




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20852




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1851
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3253
                           PA5292_tr
                           translation of PA5292
                           349
                           99.99
                           99.99
                           0
                           1829.0
     

     
     
100920
                           gb|AAG08677.1|AE004941_10
                           (AE004941) hypothetical protein PA5292 [Pseudomonas aeruginosa PAO1]
                           349
                           99.99
                           99.99
                           0
                           1829.0
     

     
     
100921
                           gb|AAO53980.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           352
                           76.13
                           86.93
                           3
                           1432.0
     

     
     
100922
                           gb|AAN70695.1|AE016713_1
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           358
                           71.78
                           84.63
                           16
                           1393.0
     

     






      

          
GC ORFID: 44853How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5292Glimmer Score: 

          
Start: 5495159Stop: 5494110

          
Length: 1050


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5292 translation of PA5292Homolog Bit Score 709.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6811 (ORF: BLASTX 550.0), t_PA5292 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTCGCCAAAGGAATACTCGCCGCGCTGGCGCTCGCCGCCGCAGTCGGCCAGGCCAGCGCCACCGAA 
CTCGAGCACTGGCCGGCCCCCGCCGCCAGGCAACTGAATGCACTGATCGAGGCCAACGCGAACAAGGGCGCC 
TACGCCGTGTTCGACATGGACAACACCAGCTATCGCTACGACCTGGAAGAATCGCTGCTGCCCTATCTGGAA 
ATGAAGGGCGTGCTGACCCGCGACAGGCTCGACCCTTCGCTGAAACTGATCCCGTTCAAGGACCAGGCCGGG 
CACAAGGAGAGCCTGTTCAGCTACTACTACCGGCTTTGCGAGATCGACGACATGGTCTGCTATCCCTGGGTC 
GCCCAGGTGTTCTCAGGCTTCACCCTCAGGGAACTGAAGGGCTATGTCGACGAACTGATGGCCTACGGCAAG 
CCGATCCCCGCCACCTATTACGACGGCGACAAGCTCGCCACGCTCGACGTCGAGCCGCCGCGCGTGTTCAGC 
GGCCAGCGCGAGCTGTACAACAAGCTGATGGAAAACGGCATCGAGGTCTACGTGATCAGCGCGGCCCACGAG 
GAACTGGTGCGGATGGTCGCGGCGGACCCCAGGTATGGCTACAACGCCAAGCCGGAGAACGTCATCGGCGTC 
ACCACCCTGCTGAAGAACCGCAAGACCGGAGAGCTGACCACCGCGCGCAAGCAGATCGCCGAGGGCAAGTAC 
GATCCCAAGGCCAACCTCGACCTGGAGGTGACCCCCTACCTGTGGACCCCGGCGACCTGGATGGCCGGCAAG 
CAGGCTGCGATCCTCACCTACATCGACCGTTGGAAGCGGCCGATCCTGGTCGCCGGCGATACCCCGGACAGC 
GACGGTTACATGCTGTTCAACGGCACCGCGGAAAACGGCGTGCACCTGTGGGTCAACCGCAAGGCCAAGTAC 
ATGGAGCAGATCAACGGCATGATCAAGCAGCATTCCGCCGCCCAGGCCAAGGCCGGCCTGCCGGTGACGGCG 
GACAGGAACTGGGTGATCGTCACCCCGGAGCAGATCCAGTAG