ViewGene
Locus Name:
GeneID:
Location:

GeneID:1849
TrivialName: PA14_32690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32690
PAO1 Ortholog Locus:PA2470
Sequence Length:1062
Protein Length:353
Start: 2839361
Stop: 2838300
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05858.1|AE004674_8 (AE004674) gentisate 1,2-dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 345/353 (97%), Positives = 350/353 (99%)
Sequence:
ATGCATAACGACAATTCCACCGAGAAGCGCGCCGACTTCTATCGACGCATCCGCCAGCAGCACCTCACCCCG
CTCTGGGAAGCCCTGCACAACCTGGTCCCGGCGCAACCCGCCGGCGGCTGCCAGGCGGCGCTGTGGCGCTAT
CGCGAACTGCGCCCGTTCCTGCTCGAGGCAGGCGACCTGATCAGCGCCGAGGAAGCGGTGCGCCGCGTGCTG
GTGCTGGAGAACCCGGACCTTCCCGGCCAGTCGGCGATCACCCCGAGCCTCTACGCCGGCCTGCAACTGATC
CTGCCGGGCGAGATCGCCCCCAGCCACCGGCACACCCAGTCGGCCCTGCGCTTCGTCGTCGAGGGCTACGGC
GCCTACACCTCGGTGGACGGCGAACGCACCCGCATGGAGCCGGGCAACTTCATCATCACTCCGTCCTGGACC
TGGCACGACCACGGCAACCGCCCCGCCGCGGAAGGCGGCGAGCCGGTGGTCTGGCTGGACGGCCTGGACATC
CCGATGCTGCGTTTCTTCGGCGCCACCTTCGCCGAGAGCTACGGCGAACCGGTGCAGCCGTTGCGACGTGGC
GAAGGCGACAGCCTCGCCCGCTACGGCAGCAACATGCTGCCGCTGCGCCACCAGCCGACGACGCCGACCTCG
CCGCTGTTCAGTTACCCCTACGCGCGCAGCCGCGAGGCCCTCGAGCGCCTGGCGCGCCTCGAACGGCCCGAT
CCCTGGGAAGGCCACAAGCTGCGCTACGTCAACCCGGCCACCGGCGGCTGGGCCATGCCGACCATCGCCACC
TGCCTGCAACTGCTGCCGGCCGGCTTCCTCGGCCAACCCGCGCGCAGCACCGACGCCAGCGTCTATTCGGTG
GTGGAAGGCAGCGGCGTGGCGCAAATCGGCGGCCGGCGCTTCGCCTTCGAGGCCAAGGATCTGTTCGTCGTG
CCCTCCTGGGCCGAGCTGCGCCTGGAAGCCGGCGCCACCGACTGCGTGCTGTTCAGTTTCTCCGACCGTCCT
GTGCAGCAGGCGCTCGGCATCCTCCGCGAATCCCGCGAACCCCTCGCCCACTGA
Translation:
MHNDNSTEKRADFYRRIRQQHLTPLWEALHNLVPAQPAGGCQAALWRYRELRPFLLEAGDLISAEEAVRRVL
VLENPDLPGQSAITPSLYAGLQLILPGEIAPSHRHTQSALRFVVEGYGAYTSVDGERTRMEPGNFIITPSWT
WHDHGNRPAAEGGEPVVWLDGLDIPMLRFFGATFAESYGEPVQPLRRGEGDSLARYGSNMLPLRHQPTTPTS
PLFSYPYARSREALERLARLERPDPWEGHKLRYVNPATGGWAMPTIATCLQLLPAGFLGQPARSTDASVYSV
VEGSGVAQIGGRRFAFEAKDLFVVPSWAELRLEAGATDCVLFSFSDRPVQQALGILRESREPLAH*
AnnotationID:1858GeneID:1849
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:10
Gene Name:gtdA
Confidence Code:2
GeneProduct:gentisate 1,2-dioxygenase
Cell Localization:()
Synonyms:PA2470
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Aromatic compound catabolism
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20848




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1849
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3251
                           PA2470_tr
                           translation of PA2470
                           353
                           97.73
                           99.15
                           0
                           1831.0
     

     
     
100826
                           gb|AAG05858.1|AE004674_8
                           (AE004674) gentisate 1,2-dioxygenase [Pseudomonas aeruginosa PAO1]
                           353
                           97.73
                           99.15
                           0
                           1831.0
     

     
     
100827
                           emb|CAD14789.1|
                           (AL646062) PROBABLE GENTISATE 1,2-DIOXYGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           353
                           63.73
                           75.63
                           5
                           1160.0
     

     
     
100832
                           dbj|BAB36453.1|
                           (AP002560) putative gentisate 1,2-dioxygenase [Escherichia coli O157:H7]
                           353
                           59.20
                           72.23
                           11
                           1103.0
     

     
     
100830
                           gb|AAG57276.1|AE005446_4
                           (AE005446) putative 1,2-dioxygenase [Escherichia coli O157:H7 EDL933]
                           353
                           59.20
                           72.23
                           11
                           1103.0
     

     






      

          
GC ORFID: 44851How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2470Glimmer Score: 

          
Start: 2114563Stop: 2115624

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2470 translation of PA2470Homolog Bit Score 709.0

          
Other Homologs:  t_PA2470 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAACGACAATTCCACCGAGAAGCGCGCCGACTTCTATCGACGCATCCGCCAGCAGCACCTCACCCCG 
CTCTGGGAAGCCCTGCACAACCTGGTCCCGGCGCAACCCGCCGGCGGCTGCCAGGCGGCGCTGTGGCGCTAT 
CGCGAACTGCGCCCGTTCCTGCTCGAGGCAGGCGACCTGATCAGCGCCGAGGAAGCGGTGCGCCGCGTGCTG 
GTGCTGGAGAACCCGGACCTTCCCGGCCAGTCGGCGATCACCCCGAGCCTCTACGCCGGCCTGCAACTGATC 
CTGCCGGGCGAGATCGCCCCCAGCCACCGGCACACCCAGTCGGCCCTGCGCTTCGTCGTCGAGGGCTACGGC 
GCCTACACCTCGGTGGACGGCGAACGCACCCGCATGGAGCCGGGCAACTTCATCATCACTCCGTCCTGGACC 
TGGCACGACCACGGCAACCGCCCCGCCGCGGAAGGCGGCGAGCCGGTGGTCTGGCTGGACGGCCTGGACATC 
CCGATGCTGCGTTTCTTCGGCGCCACCTTCGCCGAGAGCTACGGCGAACCGGTGCAGCCGTTGCGACGTGGC 
GAAGGCGACAGCCTCGCCCGCTACGGCAGCAACATGCTGCCGCTGCGCCACCAGCCGACGACGCCGACCTCG 
CCGCTGTTCAGTTACCCCTACGCGCGCAGCCGCGAGGCCCTCGAGCGCCTGGCGCGCCTCGAACGGCCCGAT 
CCCTGGGAAGGCCACAAGCTGCGCTACGTCAACCCGGCCACCGGCGGCTGGGCCATGCCGACCATCGCCACC 
TGCCTGCAACTGCTGCCGGCCGGCTTCCTCGGCCAACCCGCGCGCAGCACCGACGCCAGCGTCTATTCGGTG 
GTGGAAGGCAGCGGCGTGGCGCAAATCGGCGGCCGGCGCTTCGCCTTCGAGGCCAAGGATCTGTTCGTCGTG 
CCCTCCTGGGCCGAGCTGCGCCTGGAAGCCGGCGCCACCGACTGCGTGCTGTTCAGTTTCTCCGACCGTCCT 
GTGCAGCAGGCGCTCGGCATCCTCCGCGAATCCCGCGAACCCCTCGCCCACTGA