ViewGene
Locus Name:
GeneID:
Location:

GeneID:1848
TrivialName: PA14_34270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34270
PAO1 Ortholog Locus:PA2350
Sequence Length:1110
Protein Length:369
Start: 3047825
Stop: 3046716
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05738.1|AE004661_5 (AE004661) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 366/369 (99%), Positives = 366/369 (99%)
Sequence:
GTGACGACCATGACCGTTCCCCCGAGCCTGCTACCCCTCGAACCGTTCCCGACGGCGCCCGACACGCGCGCC
TCCACGCCGCACATCCGCCTCCACGGCCTGGGCAAGCGCTACCCCGGCGGGGTCCAGGCCCTGCGGGAGATC
GACCTGGAAATCCGCCGCGGCGAAGTGTTCGGCATCATCGGCCGCAGCGGCGCCGGCAAGTCCTCGCTGATC
CGCACCCTCAATCGCCTGGAGCGTCCCAGCGAGGGGCAGGTGCTGATCGACGGCGAGGACATCGGCGGCTAC
GACGGCCAGCGTCTGGTCGCCCTGCGCCGACGCATCGGCATGATCTTCCAGCACTTCAACCTGATGTCGGCC
AAGACCGTGCGGCAGAACATCGCCCTGCCGCTGCGGGTGGCCGGGGTGCCCCGGGCACGGATCGAGGAGCGG
GTCGCCGGGCTGCTGCAACTGGTCGGCCTGGAGGAAAAACGCGACGCCTATCCGGCGCAGCTCTCCGGCGGG
CAGAAACAGCGCGTCGGCATCGCCCGCGCGCTGGTGCACCAGCCGCAGATCCTGCTCTGCGACGAAGCCACC
TCGGCGCTGGACCCGGAGAGCACCCAGGCGATCCTCGCGCTGCTGCGCGACATCAACCGCCGGCTGGGCCTG
ACCATCGTCCTGATCACCCACGAGATGGCGGTCATCCGCGAGATCTGCGACCGCGTGGTGGTCCTCGAATGC
GGCCGCATCGTCGAACAGGGCGAAGTCTGGGAAGTCTTCGGCGATCCGCGCCATGCCGTCACCCGAAGCCTG
CTCGGCAGCCTGCGCGCCGCCCTCCCGGCCGACCTCCAGGCGCGCCTGCGCCAGGCTCCCGGCGGCGGCGAC
CCGGTGCTGCTCGATCTCCAGTACACCGGCGCCAGCCGACGGGTGCCGGACCTGCTGGCCATCGCCAGGGCC
ATCGGCCAGCGCGTCGACCTGCTCCACGGCGGCATAGAGCGGATCCAGGGCCGCGCCCTGGGGCGCCTGCTG
CTACAGGTCGGCGCGCCGCCCGGCGAGCTTCCCGGCGTGCTGGCCAAGGCCGCGCTGGTGGCGGACAAGGTG
GAGGTGCTCGGCCATGTCGCCCATGCTTGA
Translation:
MTTMTVPPSLLPLEPFPTAPDTRASTPHIRLHGLGKRYPGGVQALREIDLEIRRGEVFGIIGRSGAGKSSLI
RTLNRLERPSEGQVLIDGEDIGGYDGQRLVALRRRIGMIFQHFNLMSAKTVRQNIALPLRVAGVPRARIEER
VAGLLQLVGLEEKRDAYPAQLSGGQKQRVGIARALVHQPQILLCDEATSALDPESTQAILALLRDINRRLGL
TIVLITHEMAVIREICDRVVVLECGRIVEQGEVWEVFGDPRHAVTRSLLGSLRAALPADLQARLRQAPGGGD
PVLLDLQYTGASRRVPDLLAIARAIGQRVDLLHGGIERIQGRALGRLLLQVGAPPGELPGVLAKAALVADKV
EVLGHVAHA*
AnnotationID:1857GeneID:1848
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:16
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:metN-1
Cell Localization Confidence Code:5
MolecularFunction:putative D-methionine ABC transporter, ATP-binding protein
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1135,COG1126
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58614.1| (AE016874) D-methionine ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 343

 Score =  410 bits (1054), Expect = e-114
 Identities = 218/342 (63%), Positives = 264/342 (77%), Gaps = 4/342 (1%)

>gb|AAN65852.1|AE016213_8 (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 369

 Score =  408 bits (1048), Expect = e-113
 Identities = 227/361 (62%), Positives = 267/361 (73%), Gaps = 6/361 (1%)

>dbj|BAB51369.1| (AP003005) ABC transporter, ATP-binding protein [Mesorhizobium
           loti]
          Length = 365

 Score =  348 bits (893), Expect = 3e-95
 Identities = 195/353 (55%), Positives = 242/353 (68%), Gaps = 4/353 (1%)






 
Structural Features:
COG1135, AbcC, ABC-type metal ion transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 339 residues,  99.7% aligned
Score =  424 bits (1092), Expect = 7e-120
Identities = 184/342 (53%), Positives = 239/342 (69%), Gaps = 9/342 (2%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues, 100.0% aligned
Score =  268 bits (688), Expect = 6e-73
Identities = 108/244 (44%), Positives = 159/244 (65%), Gaps = 5/244 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14445




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20846




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32898




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1848_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1848
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3240
                           PA2350_tr
                           translation of PA2350
                           369
                           99.18
                           99.18
                           0
                           1830.0
     

     
     
100265
                           gb|AAG05738.1|AE004661_5
                           (AE004661) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           369
                           98.91
                           99.18
                           0
                           1827.0
     

     
     
100267
                           gb|AAN65852.1|AE016213_8
                           (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           381
                           60.62
                           71.65
                           24
                           1057.0
     

     
     
100266
                           gb|AAO58614.1|
                           (AE016874) D-methionine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           373
                           58.44
                           70.77
                           34
                           1059.0
     

     
     
100268
                           dbj|BAB51369.1|
                           (AP003005) ABC transporter, ATP-binding protein [Mesorhizobium loti]
                           371
                           53.09
                           66.30
                           8
                           896.0
     

     






      

          
GC ORFID: 44850How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2350Glimmer Score: 

          
Start: 1906091Stop: 1907200

          
Length: 1110


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2350 translation of PA2350Homolog Bit Score 709.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3834 (ORF: BLASTX 418.0), t_PA5503 (ORF: BLASTX 281.0), psyr_15may02_Scaffold2_revised_gene3198 (ORF: BLASTX 278.0), t_PA2350 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGACCATGACCGTTCCCCCGAGCCTGCTACCCCTCGAACCGTTCCCGACGGCGCCCGACACGCGCGCC 
TCCACGCCGCACATCCGCCTCCACGGCCTGGGCAAGCGCTACCCCGGCGGGGTCCAGGCCCTGCGGGAGATC 
GACCTGGAAATCCGCCGCGGCGAAGTGTTCGGCATCATCGGCCGCAGCGGCGCCGGCAAGTCCTCGCTGATC 
CGCACCCTCAATCGCCTGGAGCGTCCCAGCGAGGGGCAGGTGCTGATCGACGGCGAGGACATCGGCGGCTAC 
GACGGCCAGCGTCTGGTCGCCCTGCGCCGACGCATCGGCATGATCTTCCAGCACTTCAACCTGATGTCGGCC 
AAGACCGTGCGGCAGAACATCGCCCTGCCGCTGCGGGTGGCCGGGGTGCCCCGGGCACGGATCGAGGAGCGG 
GTCGCCGGGCTGCTGCAACTGGTCGGCCTGGAGGAAAAACGCGACGCCTATCCGGCGCAGCTCTCCGGCGGG 
CAGAAACAGCGCGTCGGCATCGCCCGCGCGCTGGTGCACCAGCCGCAGATCCTGCTCTGCGACGAAGCCACC 
TCGGCGCTGGACCCGGAGAGCACCCAGGCGATCCTCGCGCTGCTGCGCGACATCAACCGCCGGCTGGGCCTG 
ACCATCGTCCTGATCACCCACGAGATGGCGGTCATCCGCGAGATCTGCGACCGCGTGGTGGTCCTCGAATGC 
GGCCGCATCGTCGAACAGGGCGAAGTCTGGGAAGTCTTCGGCGATCCGCGCCATGCCGTCACCCGAAGCCTG 
CTCGGCAGCCTGCGCGCCGCCCTCCCGGCCGACCTCCAGGCGCGCCTGCGCCAGGCTCCCGGCGGCGGCGAC 
CCGGTGCTGCTCGATCTCCAGTACACCGGCGCCAGCCGACGGGTGCCGGACCTGCTGGCCATCGCCAGGGCC 
ATCGGCCAGCGCGTCGACCTGCTCCACGGCGGCATAGAGCGGATCCAGGGCCGCGCCCTGGGGCGCCTGCTG 
CTACAGGTCGGCGCGCCGCCCGGCGAGCTTCCCGGCGTGCTGGCCAAGGCCGCGCTGGTGGCGGACAAGGTG 
GAGGTGCTCGGCCATGTCGCCCATGCTTGA