ViewGene
Locus Name:
GeneID:
Location:

GeneID:1846
TrivialName: PA14_50410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50410
PAO1 Ortholog Locus:PA1084
Sequence Length:1110
Protein Length:369
Start: 4480106
Stop: 4478997
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04473.1|AE004539_15 (AE004539) flagellar P-ring protein precursor FlgI [Pseudomonas aeruginosa PAO1]
Identities = 369/369 (100%), Positives = 369/369 (100%)
Sequence:
ATGACCAAGTTCAAGCACCTGCTGGCCCTCGCCGCGCTGCTCCTGGCCGCCGGCGCGGCCCAGGCCGAGCGA
TTGAAGGATATCGCCAGCATCCAGGGCGTGCGGACCAACCAGTTGATCGGCTATGGCCTGGTGGTCGGCCTG
AGCGGCAGCGGCGACCAGACCACGCAGACGCCGTTCACCCTGCAGACCTTCAACAACATGCTGGCGCAGTTC
GGCATCAAGGTGCCGGCCAACGTCGGCAACGTGCAGTTGAAGAACGTCGCCGCGGTATCGGTGCATGCCGAC
CTGCCGCCGTTCGCCAAGCCGGGCCAGCCGATCGACGTCACCGTGTCGTCCATCGGCAACGCCAAGAGCCTG
CGCGGCGGCAGCCTGCTGATGACTCCGCTGAAAGGTATCGACGGCCAGGTCTACGCGGTCGCCCAGGGCAAC
CTGGTGGTCGGCGGCTTCGACGCCGAAGGCCGCGACGGCTCGAAGATCACCGTCAACGTACCGTCCGCCGGA
CGTATCCCGGCCGGCGCCACCGTCGAGCGCGCGGTGCCGAGCGGCTTCGACCAGGGCAACAGCCTGACGCTG
AACCTCAACCGCCCGGACTTCACCACTGCCAAGCGCATCGTCGACCGCATCAACGAACTGCTCGGTCCGGGC
GTCGCCCATGCGGTGGACGGCGGCTCGGTGCGGGTCAGCGCGCCGCTCGACCCGAACCAGCGAGTCGACTAC
CTGTCGATCCTGGAGAACCTCGACGTGCAGCCGGGCGAGGCGGTGGCCAAGGTCATCATCAATTCGCGCACC
GGCACCATCGTCATCGGCCAGAACGTCAAGGTATCGCCGGCCGCCGTCACCCACGGCAGCCTGACCGTGAGC
ATCACCGAAGACCCGATCGTCAGCCAGCCCGGTGCCTTCTCCAACGGCCAGACCGCGGTGGTGCCGCGCTCG
CGGGTGAACGCCGAGGAGGAGACCAAGCCGATGTTCAAGTTCGGTCCCGGCACCACCCTGGACGACATCGTC
CGCGCGGTGAACCAGGTCGGCGCCGCGCCGAGCGACCTGATGGCGATCCTCGAAGCCCTGAAGCAGGCCGGC
GCGTTGCAGGCCGACCTGATCGTGATCTGA
Translation:
MTKFKHLLALAALLLAAGAAQAERLKDIASIQGVRTNQLIGYGLVVGLSGSGDQTTQTPFTLQTFNNMLAQF
GIKVPANVGNVQLKNVAAVSVHADLPPFAKPGQPIDVTVSSIGNAKSLRGGSLLMTPLKGIDGQVYAVAQGN
LVVGGFDAEGRDGSKITVNVPSAGRIPAGATVERAVPSGFDQGNSLTLNLNRPDFTTAKRIVDRINELLGPG
VAHAVDGGSVRVSAPLDPNQRVDYLSILENLDVQPGEAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVS
ITEDPIVSQPGAFSNGQTAVVPRSRVNAEEETKPMFKFGPGTTLDDIVRAVNQVGAAPSDLMAILEALKQAG
ALQADLIVI*
AnnotationID:1855GeneID:1846
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:14
Gene Name:flgI
Confidence Code:2
GeneProduct:flagellar P-ring protein precursor FlgI
Cell Localization:(8) Periplasmic
Synonyms:PA1084
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1706, pfam02119
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1706, FlgI, Flagellar basal-body P-ring protein [Cell motility and secretion]
       CD-Length = 365 residues, 100.0% aligned
       Score =  469 bits (1208), Expect = 3e-133
pfam02119, FlgI, Flagellar P-ring protein. Score: 467, 1e-132






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:3695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20842




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1846
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3237
                           PA1084_tr
                           translation of PA1084
                           369
                           99.99
                           99.99
                           0
                           1832.0
     

     
     
100179
                           gb|AAG04473.1|AE004539_15
                           (AE004539) flagellar P-ring protein precursor FlgI [Pseudomonas aeruginosa PAO1]
                           369
                           99.99
                           99.99
                           0
                           1832.0
     

     
     
100180
                           gb|AAN69961.1|AE016634_10
                           (AE016790) flagellar P-ring protein precursor FlgI [Pseudomonas putida KT2440]
                           369
                           88.07
                           94.57
                           0
                           1647.0
     

     
     
100181
                           gb|AAA62846.1|
                           (L15385) flagellar P-ring protein [Pseudomonas putida]
                           369
                           85.90
                           92.95
                           2
                           1587.0
     

     
     
100182
                           gb|AAO55460.1|
                           (AE016862) flagellar P-ring protein FlgI [Pseudomonas syringae pv. tomato str. DC3000]
                           369
                           84.28
                           91.86
                           0
                           1578.0
     

     






      

          
GC ORFID: 44848How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1084Glimmer Score: 

          
Start: 473802Stop: 474911

          
Length: 1110


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1084 translation of PA1084Homolog Bit Score 710.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7900 (ORF: BLASTX 312.0), t_PA1084 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAAGTTCAAGCACCTGCTGGCCCTCGCCGCGCTGCTCCTGGCCGCCGGCGCGGCCCAGGCCGAGCGA 
TTGAAGGATATCGCCAGCATCCAGGGCGTGCGGACCAACCAGTTGATCGGCTATGGCCTGGTGGTCGGCCTG 
AGCGGCAGCGGCGACCAGACCACGCAGACGCCGTTCACCCTGCAGACCTTCAACAACATGCTGGCGCAGTTC 
GGCATCAAGGTGCCGGCCAACGTCGGCAACGTGCAGTTGAAGAACGTCGCCGCGGTATCGGTGCATGCCGAC 
CTGCCGCCGTTCGCCAAGCCGGGCCAGCCGATCGACGTCACCGTGTCGTCCATCGGCAACGCCAAGAGCCTG 
CGCGGCGGCAGCCTGCTGATGACTCCGCTGAAAGGTATCGACGGCCAGGTCTACGCGGTCGCCCAGGGCAAC 
CTGGTGGTCGGCGGCTTCGACGCCGAAGGCCGCGACGGCTCGAAGATCACCGTCAACGTACCGTCCGCCGGA 
CGTATCCCGGCCGGCGCCACCGTCGAGCGCGCGGTGCCGAGCGGCTTCGACCAGGGCAACAGCCTGACGCTG 
AACCTCAACCGCCCGGACTTCACCACTGCCAAGCGCATCGTCGACCGCATCAACGAACTGCTCGGTCCGGGC 
GTCGCCCATGCGGTGGACGGCGGCTCGGTGCGGGTCAGCGCGCCGCTCGACCCGAACCAGCGAGTCGACTAC 
CTGTCGATCCTGGAGAACCTCGACGTGCAGCCGGGCGAGGCGGTGGCCAAGGTCATCATCAATTCGCGCACC 
GGCACCATCGTCATCGGCCAGAACGTCAAGGTATCGCCGGCCGCCGTCACCCACGGCAGCCTGACCGTGAGC 
ATCACCGAAGACCCGATCGTCAGCCAGCCCGGTGCCTTCTCCAACGGCCAGACCGCGGTGGTGCCGCGCTCG 
CGGGTGAACGCCGAGGAGGAGACCAAGCCGATGTTCAAGTTCGGTCCCGGCACCACCCTGGACGACATCGTC 
CGCGCGGTGAACCAGGTCGGCGCCGCGCCGAGCGACCTGATGGCGATCCTCGAAGCCCTGAAGCAGGCCGGC 
GCGTTGCAGGCCGACCTGATCGTGATCTGA