ViewGene

Locus Name:
GeneID:
Location:

GeneID:1845
TrivialName: PA14_02720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02720
PAO1 Ortholog Locus:PA0222
Sequence Length:1059
Protein Length:352
Start: 241928
Stop: 242986
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03611.1|AE004460_4 (AE004460) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 350/352 (99%), Positives = 351/352 (99%)
Sequence:
ATGTACAAGTCCTTGCACCAGTACGCACACGTGTTTTCCCGGTTGTCCCTGTTCGGCCTGGCGTTCGCCGCG
GCGGCCCAGGCGCAGAGCCAGAGCCTGACGGTGATCTCCTTCGGCGGCGCGACCAAGGCCGCCCAGGAGCAG
GCCTATTTCAAACCCTTCGAGCGAAGCGGCGGCGGGCAGGTGGTCGCCGGCGAATACAACGGCGAAATGGCC
AAGGTGAAGGCCATGGTCGACGTCGGCAAGGTCAGCTGGGACGTGGTCGAGGTGGAGAGCCCCGAACTGCTC
CGCGGCTGCGACGAGGGGCTGTTCGAACGCCTCGACCCGGCGCGTTTCGGCGACCCCGCGCAGTTCGTCCCC
GGCACTTTCAGCGAGTGCGGGGTGGCCACCTACGTCTGGTCGATGGTGATGGCCTACGACTCGACGAAGCTG
GCCAGGGCGCCGCAGTCCTGGGCGGATTTCTGGAACGTCCGCGAGTTCCCCGGCAAGCGCGGCCTGCGCAAG
GGCGCCAAGTACACCCTGGAAGTGGCGCTGCTGGCCGACGGGGTGAAGGCGGAGGACCTCTACAAGGTACTC
GCCACCCCGGAGGGGGTCAGCCGCGCCTTCGCCAAGCTCGACCAGCTCAAGCCGAACATCCAGTGGTGGGAG
GCCGGCGCCCAGCCGCCGCAATGGCTGGCGGCCGGCGACGTGGTGATGAGCGCGGCCTACAACGGGCGCATC
GCCGCTGCGCAGAAGGAGGGGGTGAAACTGGCCATCGTCTGGCCCGGCAGTCTCTACGATCCGGAGTACTGG
GCGGTAGTGAAGGGCACGCCGAACAAGGCGCTGGCGGAGAAATTCATCGCCTTCGTCAGCCAGCCGCAGACG
CAGAAGGTGTTCTCCGAGCAGATCCCCTACGGGCCGGTACACAAGGGCACCCTGGCGTTGCTGCCGAAGACG
GTGCAGGAGGCGCTGCCGACCGCGCCGGCCAACCTCGAAGGCGCGCGGGCGGTGGATGCCGAGTTCTGGGTG
GACCACGGCGAGGAGCTGGAACAGCGTTTCAATGCCTGGGCGGCGCGCTGA
Translation:
MYKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEYNGEMA
KVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTFSECGVATYVWSMVMAYDSTKL
ARAPQSWADFWNVREFPGKRGLRKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNIQWWE
AGAQPPQWLAAGDVVMSAAYNGRIAAAQKEGVKLAIVWPGSLYDPEYWAVVKGTPNKALAEKFIAFVSQPQT
QKVFSEQIPYGPVHKGTLALLPKTVQEALPTAPANLEGARAVDAEFWVDHGEELEQRFNAWAAR*
AnnotationID:1854GeneID:1845
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:27
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA0222
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66042.1|AE016233_8 (AE016775) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas putida KT2440]
          Length = 344

 Score =  436 bits (1121), Expect = e-121
 Identities = 206/339 (60%), Positives = 259/339 (76%), Gaps = 1/339 (0%)

>gb|AAO54105.1| (AE016857) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 344

 Score =  422 bits (1086), Expect = e-117
 Identities = 203/341 (59%), Positives = 256/341 (75%), Gaps = 3/341 (0%)

>gb|AAM84963.1|AE013742_5 (AE013742) putative substrate-binding protein of ABC transporter
           [Yersinia pestis KIM]
          Length = 342

 Score =  414 bits (1064), Expect = e-115
 Identities = 191/342 (55%), Positives = 251/342 (73%)

Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  99.7% aligned
Score =  208 bits (530), Expect = 9e-55
Identities = 109/375 (29%), Positives = 163/375 (43%), Gaps = 38/375 (10%)
Genomic Context:
Comment:
ReferenceID:3693
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20840
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33582
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1845_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1845

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3233 PA0222_tr translation of PA0222 352 99.43 99.71 0 1834.0
100163 gb|AAG03611.1|AE004460_4 (AE004460) hypothetical protein PA0222 [Pseudomonas aeruginosa PAO1] 352 99.43 99.71 0 1834.0
3234 PA0604_tr translation of PA0604 352 60.79 75.28 4 1124.0
100166 gb|AAG03993.1|AE004496_9 (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] 352 60.79 75.28 4 1124.0
100165 gb|AAN66042.1|AE016233_8 (AE016775) polyamine ABC transporter, periplasmic polyamine-binding protein [Pseudomonas putida KT2440] 353 59.20 74.22 10 1121.0
GC ORFID: 44847How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0222Glimmer Score:
Start: 6043269Stop: 6044327
Length: 1059
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0222 translation of PA0222Homolog Bit Score 711.0
Other Homologs: t_PA0604 (ORF: BLASTX 435.0), psyr_15may02_Scaffold13_revised_gene2135 (ORF: BLASTX 422.0), t_PA0602 (ORF: BLASTX 400.0), t_PA4985 (ORF: BLASTX 385.0), t_PA0222 (ORF: GLIMMER)
GC ORF Sequence
ATGTACAAGTCCTTGCACCAGTACGCACACGTGTTTTCCCGGTTGTCCCTGTTCGGCCTGGCGTTCGCCGCG
GCGGCCCAGGCGCAGAGCCAGAGCCTGACGGTGATCTCCTTCGGCGGCGCGACCAAGGCCGCCCAGGAGCAG
GCCTATTTCAAACCCTTCGAGCGAAGCGGCGGCGGGCAGGTGGTCGCCGGCGAATACAACGGCGAAATGGCC
AAGGTGAAGGCCATGGTCGACGTCGGCAAGGTCAGCTGGGACGTGGTCGAGGTGGAGAGCCCCGAACTGCTC
CGCGGCTGCGACGAGGGGCTGTTCGAACGCCTCGACCCGGCGCGTTTCGGCGACCCCGCGCAGTTCGTCCCC
GGCACTTTCAGCGAGTGCGGGGTGGCCACCTACGTCTGGTCGATGGTGATGGCCTACGACTCGACGAAGCTG
GCCAGGGCGCCGCAGTCCTGGGCGGATTTCTGGAACGTCCGCGAGTTCCCCGGCAAGCGCGGCCTGCGCAAG
GGCGCCAAGTACACCCTGGAAGTGGCGCTGCTGGCCGACGGGGTGAAGGCGGAGGACCTCTACAAGGTACTC
GCCACCCCGGAGGGGGTCAGCCGCGCCTTCGCCAAGCTCGACCAGCTCAAGCCGAACATCCAGTGGTGGGAG
GCCGGCGCCCAGCCGCCGCAATGGCTGGCGGCCGGCGACGTGGTGATGAGCGCGGCCTACAACGGGCGCATC
GCCGCTGCGCAGAAGGAGGGGGTGAAACTGGCCATCGTCTGGCCCGGCAGTCTCTACGATCCGGAGTACTGG
GCGGTAGTGAAGGGCACGCCGAACAAGGCGCTGGCGGAGAAATTCATCGCCTTCGTCAGCCAGCCGCAGACG
CAGAAGGTGTTCTCCGAGCAGATCCCCTACGGGCCGGTACACAAGGGCACCCTGGCGTTGCTGCCGAAGACG
GTGCAGGAGGCGCTGCCGACCGCGCCGGCCAACCTCGAAGGCGCGCGGGCGGTGGATGCCGAGTTCTGGGTG
GACCACGGCGAGGAGCTGGAACAGCGTTTCAATGCCTGGGCGGCGCGCTGA