ViewGene
Locus Name:
GeneID:
Location:

GeneID:1843
TrivialName: PA14_56730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56730
PAO1 Ortholog Locus:PA4362
Sequence Length:1059
Protein Length:352
Start: 5053838
Stop: 5054896
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07750.1|AE004852_3 (AE004852) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 349/352 (99%), Positives = 350/352 (99%)
Sequence:
ATGGCCAGTCACTGGATGATCTACGGCGCCAACGGCTACACCGGCCGGCTGGTCGCTGAACAGGCGCAGCGC
GAGGGCCTGACGCCGCTCCTCGGCGGACGCAACCCGGCCGCCCTGCACGCCCTCGGCAGCCAGCTCGGGCTG
GAGTGCCGGGTCTTCGACCTGGGGGATCCGCAGGCCTGCCGCGAAGCCCTGGACCAGGTGAAGGTGGTGGCC
CATTGCGCCGGTCCGTTCTCCGCCACTAGCACGCCGATGATCGCCGCCTGCCGTGCCGCCGGCACCCACTAC
GTGGATATCACTGGAGAGATCGCGGTGTTCGAGCAGGCCCACGCCGGCGACGCCGAGGCCCGCGAGGCCGGC
ATCGTGGTCTGCCCGGGCGTCGGCTTCGATGTGATCCCCACCGATTGCCTGGCCGCCTGCCTGAAGGAGGCG
CTGCCGGACGCGCAACGGCTGGCGCTGGGCTTCGACACCGGCAGCGGGCTTTCGACGGGAACCGCGAAGACC
AGCGTCGAAGGCCTCAAGCTCGGCGGCAAGATCCGCGAGAATGGCCGCCTGCGCGACGTACCGCTGGGCTAC
AAGCGCCGCGACATCGATTTCGGCCGCGGCCTGCGGCACGCCGTGACGATTCCCTGGGGCGACGTGGCCACC
GCCTACTACAGCACCGGCATCCCGGACATCGAGGTCTACCTGCCGGCGCCGCCGCTGCTGGCCCTGAGCATG
CGCCTGATCGACCCACTGCGTCCGCTGCTCGGTCGGCAACGGGTCCAGGACTGGCTCAAGGGGCAGGTCGAC
AAACGTATCTCCGGCCCCGACCAGGCGGCCCGCGAGCGTCTGCGCACCTGGGTCTGGGGCGAGGCGCGCAAC
GCCCGCGGCGAACGCCGCACGGCGCGCCTGGAGACGGCCAACGTGTACGACCTGACCCTGCACGGCGTGCTC
CTGGCAGTGCGCCACCTGCTGGACTACCAGGGGCCCGGCGGCTACTTCACGCCATCGCGGTTGCTCGGCGCG
CGCTGCGTCGAATCGTTGCCCGGCTCCGGACGAATCACCGTCATCGGCTGA
Translation:
MASHWMIYGANGYTGRLVAEQAQREGLTPLLGGRNPAALHALGSQLGLECRVFDLGDPQACREALDQVKVVA
HCAGPFSATSTPMIAACRAAGTHYVDITGEIAVFEQAHAGDAEAREAGIVVCPGVGFDVIPTDCLAACLKEA
LPDAQRLALGFDTGSGLSTGTAKTSVEGLKLGGKIRENGRLRDVPLGYKRRDIDFGRGLRHAVTIPWGDVAT
AYYSTGIPDIEVYLPAPPLLALSMRLIDPLRPLLGRQRVQDWLKGQVDKRISGPDQAARERLRTWVWGEARN
ARGERRTARLETANVYDLTLHGVLLAVRHLLDYQGPGGYFTPSRLLGARCVESLPGSGRITVIG*
AnnotationID:1852GeneID:1843
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4362
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17113




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1843_cdd.html


    		




 
URL:

















    ReferenceID:20836




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1843
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3231
                           PA4362_tr
                           translation of PA4362
                           352
                           99.14
                           99.43
                           0
                           1835.0
     

     
     
100064
                           gb|AAG07750.1|AE004852_3
                           (AE004852) hypothetical protein PA4362 [Pseudomonas aeruginosa PAO1]
                           352
                           99.14
                           99.43
                           0
                           1835.0
     

     
     
100065
                           gb|AAL53388.1|
                           (AE009653) PUTATIVE INTEGRAL MEMBRANE PROTEIN [Brucella melitensis 16M]
                           352
                           55.96
                           70.73
                           1
                           1003.0
     

     
     
100066
                           gb|AAN34308.1|AE014608_1
                           (AE014608) conserved hypothetical protein [Brucella suis 1330]
                           352
                           55.96
                           70.73
                           1
                           1002.0
     

     
     
100067
                           dbj|BAC62909.1|
                           (AP005089) putative integral membrane protein [Vibrio parahaemolyticus]
                           360
                           48.88
                           68.05
                           8
                           924.0
     

     






      

          
GC ORFID: 44845How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4362Glimmer Score: 

          
Start: 4317514Stop: 4318572

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4362 translation of PA4362Homolog Bit Score 711.0

          
Other Homologs:  t_PA4362 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGTCACTGGATGATCTACGGCGCCAACGGCTACACCGGCCGGCTGGTCGCTGAACAGGCGCAGCGC 
GAGGGCCTGACGCCGCTCCTCGGCGGACGCAACCCGGCCGCCCTGCACGCCCTCGGCAGCCAGCTCGGGCTG 
GAGTGCCGGGTCTTCGACCTGGGGGATCCGCAGGCCTGCCGCGAAGCCCTGGACCAGGTGAAGGTGGTGGCC 
CATTGCGCCGGTCCGTTCTCCGCCACTAGCACGCCGATGATCGCCGCCTGCCGTGCCGCCGGCACCCACTAC 
GTGGATATCACTGGAGAGATCGCGGTGTTCGAGCAGGCCCACGCCGGCGACGCCGAGGCCCGCGAGGCCGGC 
ATCGTGGTCTGCCCGGGCGTCGGCTTCGATGTGATCCCCACCGATTGCCTGGCCGCCTGCCTGAAGGAGGCG 
CTGCCGGACGCGCAACGGCTGGCGCTGGGCTTCGACACCGGCAGCGGGCTTTCGACGGGAACCGCGAAGACC 
AGCGTCGAAGGCCTCAAGCTCGGCGGCAAGATCCGCGAGAATGGCCGCCTGCGCGACGTACCGCTGGGCTAC 
AAGCGCCGCGACATCGATTTCGGCCGCGGCCTGCGGCACGCCGTGACGATTCCCTGGGGCGACGTGGCCACC 
GCCTACTACAGCACCGGCATCCCGGACATCGAGGTCTACCTGCCGGCGCCGCCGCTGCTGGCCCTGAGCATG 
CGCCTGATCGACCCACTGCGTCCGCTGCTCGGTCGGCAACGGGTCCAGGACTGGCTCAAGGGGCAGGTCGAC 
AAACGTATCTCCGGCCCCGACCAGGCGGCCCGCGAGCGTCTGCGCACCTGGGTCTGGGGCGAGGCGCGCAAC 
GCCCGCGGCGAACGCCGCACGGCGCGCCTGGAGACGGCCAACGTGTACGACCTGACCCTGCACGGCGTGCTC 
CTGGCAGTGCGCCACCTGCTGGACTACCAGGGGCCCGGCGGCTACTTCACGCCATCGCGGTTGCTCGGCGCG 
CGCTGCGTCGAATCGTTGCCCGGCTCCGGACGAATCACCGTCATCGGCTGA