ViewGene
Locus Name:
GeneID:
Location:

GeneID:1842
TrivialName: PA14_17760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17760
PAO1 Ortholog Locus:PA3596
Sequence Length:1074
Protein Length:357
Start: 1525771
Stop: 1526844
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06984.1|AE004780_3 (AE004780) probable methylated-DNA--protein-cysteine methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 356/357 (99%), Positives = 356/357 (99%)
Sequence:
ATGTCCGACGCAGCGTTGTTCCTTCCCCTTCCCGATGACGACACCCTGTATGCCGCGCTGTTGGCGCGCGAC
CCCGCCTACGATGGCTTCGCCTTCGTCGGGGTGAAGAGCACCGGGGTGTTCTGCCGCCTGACCTGCCCGGCG
CGCAAGCCGAAGCGCGAGAACACCCTGTTCTTCGATTCGATCAAGGGCTGCGTCGAGGCCGGCTTCCGACCC
TGCCTGCGTTGCCGGCCGCTGGAGCGGCTCGGCACGCAGGGGCCGCTGGTCAGCGACCTGCTCCAGCGCCTC
GGTCGGCAACCGCAGCGGCGCTGGTTCGAAGACGACCTGGCGGCGCTGGGCTATGACCCGTCCACCGTGCGC
CGTGCTTTCAAGCGCGAGTTCGGCGTGACCTTTCTGGAAATGGCTCGCCTGCGCCGTCTTGGCCAGGTCGCC
GAGCGGCTGTCCTCGGGCGCGCGGGTGATCGACGCGCAACTGGATGCCAGCTTCGACTCTGACAGCGGCTTC
CGTAGCGCCTTCGCGCGCCTGCTGGGCGAGCCGCCGTCGCAGTTGCGCGGGCGCGAGCTGCTCAAGGCGGAC
TGGCTGCAGACCCCGCTCGGCGCCATGCTCGCGGTGGCCGATGCGCAGGCCCTGCACCTGCTGGAATTCTTC
GACCGCCCGGCGTTGAGCGGGGAGCTGAAACGCCTGCAGAAGAGCAGCGGATCGAGCATCGGTTTCGGCCGT
TTCGCCTCCATCGACAGGATCGAGGCGGAACTCGCCGACTACTTCGGCGGTACTCCAGTGCGCTTCCAGACC
CCCTTGGCGCTGAACGCCTCGGCCTTCACCCGCACGGTCTGGCAGGCGCTGCGCGAGGTACCGTGCGGCAGC
ACGCAGAGCTACGCCGGGCTGGCCAGGTCCATCGGCTCGCCGTCGTCGGTGCGCGCCGTGGCCCGCGCCAAC
GGAGCCAACCAGATCGCCATCGTGATTCCCTGCCACCGCGTCATCGGTTCGGACGGTTCCCTGACCGGCTAT
GGCGGTGGCCTGTGGCGCAAGCGCTGGTTGCTGGAGCACGAGCGGCGCATGGGCGCTGCCGGCTAG
Translation:
MSDAALFLPLPDDDTLYAALLARDPAYDGFAFVGVKSTGVFCRLTCPARKPKRENTLFFDSIKGCVEAGFRP
CLRCRPLERLGTQGPLVSDLLQRLGRQPQRRWFEDDLAALGYDPSTVRRAFKREFGVTFLEMARLRRLGQVA
ERLSSGARVIDAQLDASFDSDSGFRSAFARLLGEPPSQLRGRELLKADWLQTPLGAMLAVADAQALHLLEFF
DRPALSGELKRLQKSSGSSIGFGRFASIDRIEAELADYFGGTPVRFQTPLALNASAFTRTVWQALREVPCGS
TQSYAGLARSIGSPSSVRAVARANGANQIAIVIPCHRVIGSDGSLTGYGGGLWRKRWLLEHERRMGAAG*
AnnotationID:1851GeneID:1842
AnnotatorUID: diggins
Modification Date/Time: 2005-07-02 17:05:36
Gene Name:
Confidence Code:3
GeneProduct:putative methylated-DNA--protein-cysteine methyltransferase
Cell Localization:()
Synonyms:ada
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative ada regulatory protein
Functional Category Confidence Code:5
COGs:COG2169,COG0350,pfam01035
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:2.1.1.63
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL41915.1| (AE009055) methylated-DNA--protein-cysteine methyltransferase
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 378

 Score =  416 bits (1070), Expect = e-116
 Identities = 204/343 (59%), Positives = 256/343 (74%)

>gb|AAL53647.1| (AE009678) ADA REGULATORY PROTEIN /
           O-6-METHYLGUANINE-DNA-ALKYLTRANSFERASE [Brucella
           melitensis 16M]
          Length = 350

 Score =  393 bits (1009), Expect = e-108
 Identities = 193/345 (55%), Positives = 246/345 (71%)






 
Structural Features:
COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]
CD-Length = 187 residues, 100.0% aligned
Score =  226 bits (577), Expect = 6e-60
Identities = 84/187 (44%), Positives = 117/187 (62%)

COG0350, Ada, Methylated DNA-protein cysteine methyltransferase 
[DNA replication, recombination, and repair]
CD-Length = 168 residues,  99.4% aligned
Score =  172 bits (436), Expect = 1e-43
Identities = 71/167 (42%), Positives = 92/167 (55%), Gaps = 3/167 (1%)

pfam01035, Methyltransf_1, 6-O-methylguanine DNA methyltransferase,
DNA binding domain.
CD-Length = 86 residues,  97.7% aligned
Score =  117 bits (295), Expect = 3e-27
Identities = 41/84 (48%), Positives = 55/84 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20834




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31945




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1842_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1842
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3229
                           PA3596_tr
                           translation of PA3596
                           357
                           99.71
                           99.71
                           0
                           1834.0
     

     
     
100005
                           gb|AAG06984.1|AE004780_3
                           (AE004780) probable methylated-DNA--protein-cysteine methyltransferase [Pseudomonas aeruginosa PAO1]
                           357
                           99.71
                           99.71
                           0
                           1834.0
     

     
     
100006
                           emb|CAC41874.1|
                           (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
                           375
                           56.53
                           70.93
                           23
                           1127.0
     

     
     
100007
                           gb|AAL41915.1|
                           (AE009055) methylated-DNA--protein-cysteine methyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           379
                           54.88
                           69.12
                           23
                           1065.0
     

     
     
100008
                           gb|AAK86706.1|
                           (AE008021) AGR_C_1643p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           379
                           54.88
                           69.12
                           23
                           1065.0
     

     






      

          
GC ORFID: 44844How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3596Glimmer Score: 

          
Start: 3428165Stop: 3427092

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3596 translation of PA3596Homolog Bit Score 711.0

          
Other Homologs:  t_PA0995 (ORF: BLASTX 118.0), t_PA3596 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGACGCAGCGTTGTTCCTTCCCCTTCCCGATGACGACACCCTGTATGCCGCGCTGTTGGCGCGCGAC 
CCCGCCTACGATGGCTTCGCCTTCGTCGGGGTGAAGAGCACCGGGGTGTTCTGCCGCCTGACCTGCCCGGCG 
CGCAAGCCGAAGCGCGAGAACACCCTGTTCTTCGATTCGATCAAGGGCTGCGTCGAGGCCGGCTTCCGACCC 
TGCCTGCGTTGCCGGCCGCTGGAGCGGCTCGGCACGCAGGGGCCGCTGGTCAGCGACCTGCTCCAGCGCCTC 
GGTCGGCAACCGCAGCGGCGCTGGTTCGAAGACGACCTGGCGGCGCTGGGCTATGACCCGTCCACCGTGCGC 
CGTGCTTTCAAGCGCGAGTTCGGCGTGACCTTTCTGGAAATGGCTCGCCTGCGCCGTCTTGGCCAGGTCGCC 
GAGCGGCTGTCCTCGGGCGCGCGGGTGATCGACGCGCAACTGGATGCCAGCTTCGACTCTGACAGCGGCTTC 
CGTAGCGCCTTCGCGCGCCTGCTGGGCGAGCCGCCGTCGCAGTTGCGCGGGCGCGAGCTGCTCAAGGCGGAC 
TGGCTGCAGACCCCGCTCGGCGCCATGCTCGCGGTGGCCGATGCGCAGGCCCTGCACCTGCTGGAATTCTTC 
GACCGCCCGGCGTTGAGCGGGGAGCTGAAACGCCTGCAGAAGAGCAGCGGATCGAGCATCGGTTTCGGCCGT 
TTCGCCTCCATCGACAGGATCGAGGCGGAACTCGCCGACTACTTCGGCGGTACTCCAGTGCGCTTCCAGACC 
CCCTTGGCGCTGAACGCCTCGGCCTTCACCCGCACGGTCTGGCAGGCGCTGCGCGAGGTACCGTGCGGCAGC 
ACGCAGAGCTACGCCGGGCTGGCCAGGTCCATCGGCTCGCCGTCGTCGGTGCGCGCCGTGGCCCGCGCCAAC 
GGAGCCAACCAGATCGCCATCGTGATTCCCTGCCACCGCGTCATCGGTTCGGACGGTTCCCTGACCGGCTAT 
GGCGGTGGCCTGTGGCGCAAGCGCTGGTTGCTGGAGCACGAGCGGCGCATGGGCGCTGCCGGCTAG