ViewGene
Locus Name:
GeneID:
Location:

GeneID:1841
TrivialName: PA14_57140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57140
PAO1 Ortholog Locus:PA4396
Sequence Length:1101
Protein Length:366
Start: 5089455
Stop: 5090555
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07784.1|AE004855_6 (AE004855) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 366/366 (100%), Positives = 366/366 (100%)
Sequence:
ATGCCCGCCGGTGTGGCGGAGACCGACGATTTCTTCCCGATGGCGCGCGCGACCGCGGCCGGGACCCGGCCT
CCCGCGACGAACCGGGCCCTTGCCGGCAGCGTACCGGCGCCCATCCTCTTCTCGAGTCCGTTCATGCCCAAC
CCCGATCTCAGCATCCTGGTCGTCGACGACGCCAAGTTTTCCAGCGCCATGATCGGCCGCGCCCTCAGCCAG
GCCGGCTACCAGGACATCCGCTTCGCCAGCAGCGCCAGCGAGGCCCTGCAGCAGCTCGAACAACGCCCGGTC
AGCGTGCTCCTGGCCGACTGGCTGATGCCGGAGATGGACGGCCTGGAACTGACCGCCCGGGTCCGCCAACTG
GACGAAAGCATCAACCACTACACCTATATCGTCCTGCTCACCGGCAAGGAAGGCGAGAACGTCCTCGGCGAG
GCCTTCGACCGCGGCGTCGACGACTTCGTCAGCAAGGCCGCGATGAACGAGCAACTGGTGCCGCGCATCTAC
GCAGCCGACCGCCTGTGCAACACCCTGCAACGGTTGCTGGTGGAAAACCGCCTGCTCACCgAAAACATCGCG
CGGATGGAAGAACGCAACCTGGTGGATACCCTCACCGGCCTCGGCAATCCCCGCTACCTGCGCCAGAAGCTG
GCCGACAGCCTGCGCCAGGTGGAAACCCGCGGTGGAGCGCTGTGCTACCTGCTGGTCGGCATGCCCGAGGCA
CCGGTCCTGCGCCAGCGGCACGGCGAGGCCTTCCATCGCGAGCTGCTGCTCGGCGTGGCCAGGCGCCTGCAA
CAGCTGGTCCGGCCGCTGGACGTGCTGGTGCGCCTGGACGAGCAGCATTTCGCCCTGATCACCTTGGTGGAG
GACCTGCACGAATGCTCGTCGAGCAGCTTCAAGCGGCTGCACGACGGGCTCAACCTGAAGGCCTTCAAGACC
AGCGAAGGCTTCATCAGCCTGAAAGCCGGCATCGCCATGCTCGGCCTCGACAGCGGGGCATTGCCGCTGGGC
ATCGACGAACTGCTGCAGCGCACCGAGGCCCTGTTGCCCGATGCCTATGCCAGCGGCAGGATCGCAACCTGC
CGGCTACCGGCACTGCGCTAG
Translation:
MPAGVAETDDFFPMARATAAGTRPPATNRALAGSVPAPILFSSPFMPNPDLSILVVDDAKFSSAMIGRALSQ
AGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGLELTARVRQLDESINHYTYIVLLTGKEGENVLGE
AFDRGVDDFVSKAAMNEQLVPRIYAADRLCNTLQRLLVENRLLTENIARMEERNLVDTLTGLGNPRYLRQKL
ADSLRQVETRGGALCYLLVGMPEAPVLRQRHGEAFHRELLLGVARRLQQLVRPLDVLVRLDEQHFALITLVE
DLHECSSSSFKRLHDGLNLKAFKTSEGFISLKAGIAMLGLDSGALPLGIDELLQRTEALLPDAYASGRIATC
RLPALR*
AnnotationID:1850GeneID:1841
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 13:01:10
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4396
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3706
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3706, PleD, Response regulator containing a CheY-like 
receiver domain and a GGDEF domain 
[Signal transduction mechanisms]
CD-Length = 435 residues,  81.4% aligned
Score =  269 bits (689), Expect = 8e-73
Identities = 108/366 (29%), Positives = 168/366 (45%), Gaps = 14/366 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20832




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:27328




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1841_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1841
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3228
                           PA4396_tr
                           translation of PA4396
                           366
                           99.99
                           99.99
                           0
                           1837.0
     

     
     
100004
                           gb|AAG07784.1|AE004855_6
                           (AE004855) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           366
                           99.99
                           99.99
                           0
                           1837.0
     

     






      

          
GC ORFID: 44843How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4396Glimmer Score: 

          
Start: 4353131Stop: 4354231

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4396 translation of PA4396Homolog Bit Score 712.0

          
Other Homologs:  t_PA4396 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCCGGTGTGGCGGAGACCGACGATTTCTTCCCGATGGCGCGCGCGACCGCGGCCGGGACCCGGCCT 
CCCGCGACGAACCGGGCCCTTGCCGGCAGCGTACCGGCGCCCATCCTCTTCTCGAGTCCGTTCATGCCCAAC 
CCCGATCTCAGCATCCTGGTCGTCGACGACGCCAAGTTTTCCAGCGCCATGATCGGCCGCGCCCTCAGCCAG 
GCCGGCTACCAGGACATCCGCTTCGCCAGCAGCGCCAGCGAGGCCCTGCAGCAGCTCGAACAACGCCCGGTC 
AGCGTGCTCCTGGCCGACTGGCTGATGCCGGAGATGGACGGCCTGGAACTGACCGCCCGGGTCCGCCAACTG 
GACGAAAGCATCAACCACTACACCTATATCGTCCTGCTCACCGGCAAGGAAGGCGAGAACGTCCTCGGCGAG 
GCCTTCGACCGCGGCGTCGACGACTTCGTCAGCAAGGCCGCGATGAACGAGCAACTGGTGCCGCGCATCTAC 
GCAGCCGACCGCCTGTGCAACACCCTGCAACGGTTGCTGGTGGAAAACCGCCTGCTCACCgAAAACATCGCG 
CGGATGGAAGAACGCAACCTGGTGGATACCCTCACCGGCCTCGGCAATCCCCGCTACCTGCGCCAGAAGCTG 
GCCGACAGCCTGCGCCAGGTGGAAACCCGCGGTGGAGCGCTGTGCTACCTGCTGGTCGGCATGCCCGAGGCA 
CCGGTCCTGCGCCAGCGGCACGGCGAGGCCTTCCATCGCGAGCTGCTGCTCGGCGTGGCCAGGCGCCTGCAA 
CAGCTGGTCCGGCCGCTGGACGTGCTGGTGCGCCTGGACGAGCAGCATTTCGCCCTGATCACCTTGGTGGAG 
GACCTGCACGAATGCTCGTCGAGCAGCTTCAAGCGGCTGCACGACGGGCTCAACCTGAAGGCCTTCAAGACC 
AGCGAAGGCTTCATCAGCCTGAAAGCCGGCATCGCCATGCTCGGCCTCGACAGCGGGGCATTGCCGCTGGGC 
ATCGACGAACTGCTGCAGCGCACCGAGGCCCTGTTGCCCGATGCCTATGCCAGCGGCAGGATCGCAACCTGC 
CGGCTACCGGCACTGCGCTAG