ViewGene
Locus Name:
GeneID:
Location:

GeneID:184
TrivialName: PA14_54210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54210
PAO1 Ortholog Locus:PA0779
Sequence Length:2400
Protein Length:799
Start: 4809758
Stop: 4812157
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04168.1|AE004512_11 (AE004512) probable ATP-dependent protease [Pseudomonas aeruginosa PAO1]
Identities = 798/799 (99%), Positives = 799/799 (100%)
Sequence:
ATGAGCGACCAGGACGTTAATCCCGAACACATCAGCGACGCGCAGCCCGCCGGCACCGGCCTGGTGCTGCCC
GGCCAGACCCTGCCGACCACCCTCTACGTGATCCCGATCCACAACCGCCCCTTCTTCCCGGCGCAGGTGCTG
CCGGTGATCGTCAACGAAGAACCCTGGGCGGAAACCCTCGAACTGGTGGCCAAGACCGACCACCATTCGCTG
GCCCTGTTCTTCATGGACAATCCTCCGGAAGACCCGCGCCACTTCGACGTCAACAGCCTGCCCGAGCACGGC
ACGCTGGTCCGGGTGCACCATGCCTCGCGCGAGGGCGGCAAGCTGCAGTTCGTCGCCCAGGGCCTGTCGCGG
GTGCGTATCCGGGGCTGGATCAAGCGCCATCGTCCGCCGTTCATGGTGGAGGTGGACTATCCGAAGACCCCG
ATCGATCCCAGTGACGAAGTGAAGGCCTACGGCATGGCTCTGATCAATGCGATCAAGGAGCTGCTGCCGCTC
AACCCGCTGTACAGCGAGGAACTGAAGAACTACCTGAACCGCTTCAGTCCCAACGACCCGTCGCCGCTCACC
GACTTCGCCGCGGCCCTGACCACCGCGCCCGGCGGCGAACTGCAGGAAGTGCTGGACACCGTGCCGATCCTC
AAGCGGATGGAGAAGGTCTTGCCGCTGCTGCGCAAGGAGGTGGAAGTCGCGCGCCTGCAGAAGGAGCTGTCC
GCCGAGGTCAACCGCAAGATCGGCGAACACCAGCGCGAATTCTTCCTCAAGGAACAGTTGAAGATCATCCAG
CAGGAGCTGGGCATCACCAAGGACGACAAGAGCGCCGACGCCGACGAATTCCGCGCCCGCCTGGAAGGCAAG
GTGCTGCCCGAGCAGGCGCGCAAGCGTATCGACGAAGAGCTGAACAAGCTGTCGATCCTCGAGAGCGGCTCG
CCCGAGTACGCAGTCACCCGCAACTACCTGGACTGGGCCACAGCCCTGCCCTGGGGCGTGTACGGCAAGGAC
AAGCTCGACCTCAAGCATGCGCGCAAGGTCCTCGACAAGCATCACGCGGGCCTCGACGACATCAAGGATCGC
ATCCTCGAATTCCTCGCCGTGGGTAGTTTCAAGGGCGAGATCGCCGGTTCCATCGTGCTCCTGGTCGGCCCG
CCGGGGGTGGGCAAGACCAGCATCGGCAAATCCATCGCCGAGAGCCTCGGCCGGCCGTTCTACCGCTTCAGC
GTCGGCGGCATGCGCGACGAGGCGGAGATCAAGGGCCACCGCCGCACCTACATCGGCGCCCTGCCCGGCAAG
CTGGTGCAGGCGTTGAAGGAAGTCGAGGTGATGAACCCGGTGATCATGCTCGACGAAATCGACAAGCTCGGC
GCCAGCTACCAGGGCGACCCGGCCTCGGCGCTGCTGGAAACCCTCGACCCGGAGCAGAACGTCGAATTCCTC
GACCACTACCTGGACCTGCGCCTGGACCTGTCCAAGGTGCTGTTCGTCTGCACCGCCAACACCCTCGACTCG
ATCCCCGGACCGCTCCTCGACCGGATGGAAGTGATCCGCCTGTCCGGCTACATCTCCGAGGAAAAACTGGCC
ATCGCCAAGCGTCACCTGTGGCCCAAGCAGTTGGAAAAGGCCGGCGTGCCCAAGGGCCGCCTGAGCATCAGC
GATGCCGCGCTGCGTGCGGTGATCGAGGGCTATGCGCGGGAAGCCGGGGTGCGCCAGTTGGAGAAACAGCTC
GGCAAGCTGGTGCGCAAGTCGGTGGTCAAGCTGCTGGAGGATCCCGAGTCGAAGGTGAAGATCGGTCCCAGG
GACCTCGAGGACTACCTCGGCATGCCGGTGTTCCGCAGCGAGCAGGTGCTTTCCGGGATCGGTGTGATCACC
GGGCTGGCCTGGACCAGCATGGGCGGCGCCACCCTGCCGATCGAGGCGACCCGCATCCACACGCTGAACCGT
GGCTTCAAGCTCACCGGCCAGCTCGGCGACGTGATGAAGGAATCCGCCGAGATCGCCTATAGCTACATCGGC
TCGCACCTGAAGAAGTATGGCGGCGACCCGACCTTCTTCGACCAGGCCTTCGTCCACCTGCACGTGCCGGAA
GGCGCCACGCCCAAGGATGGCCCCAGCGCCGGCGTCACCATGGCCAGCGCCCTGCTCTCCCTGGCGCGCAAC
CAGGTGCCGAAGAAAGGCGTGGCGATGACCGGCGAACTGACCCTGACCGGCCAGGTCCTGCCCATCGGCGGG
GTCCGCGAGAAGGTGATCGCCGCGCGCCGGCAGAAGATCTTCGAGCTGATCCTGCCGGAAGCCAACCGCGGC
CACTTCGAAGAGTTGCCCGACTATCTCAAGGAAGGGCTGACCGTGCATTTCGCCAAGCGCTACGGCGACGTG
GCCAAGGTGCTGTTCCCGGCCTGA
Translation:
MSDQDVNPEHISDAQPAGTGLVLPGQTLPTTLYVIPIHNRPFFPAQVLPVIVNEEPWAETLELVAKTDHHSL
ALFFMDNPPEDPRHFDVNSLPEHGTLVRVHHASREGGKLQFVAQGLSRVRIRGWIKRHRPPFMVEVDYPKTP
IDPSDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTTAPGGELQEVLDTVPIL
KRMEKVLPLLRKEVEVARLQKELSAEVNRKIGEHQREFFLKEQLKIIQQELGITKDDKSADADEFRARLEGK
VLPEQARKRIDEELNKLSILESGSPEYAVTRNYLDWATALPWGVYGKDKLDLKHARKVLDKHHAGLDDIKDR
ILEFLAVGSFKGEIAGSIVLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGK
LVQALKEVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDLRLDLSKVLFVCTANTLDS
IPGPLLDRMEVIRLSGYISEEKLAIAKRHLWPKQLEKAGVPKGRLSISDAALRAVIEGYAREAGVRQLEKQL
GKLVRKSVVKLLEDPESKVKIGPRDLEDYLGMPVFRSEQVLSGIGVITGLAWTSMGGATLPIEATRIHTLNR
GFKLTGQLGDVMKESAEIAYSYIGSHLKKYGGDPTFFDQAFVHLHVPEGATPKDGPSAGVTMASALLSLARN
QVPKKGVAMTGELTLTGQVLPIGGVREKVIAARRQKIFELILPEANRGHFEELPDYLKEGLTVHFAKRYGDV
AKVLFPA*
AnnotationID:194GeneID:184
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:45
Gene Name:
Confidence Code:3
GeneProduct:probable ATP-dependent protease
Cell Localization:(1) Cytoplasmic
Synonyms:PA0779
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG2004, COG0466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG2004, Mitochondrial ATP-dependent protease PIM1/LON.  Score: 789, 0.0
COG0466, Lon, ATP-dependent Lon protease, bacterial type.  Score: 999, 0.0






   
Genomic Context:






   
Comment:


















    ReferenceID:371




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:184
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
321
                           PA0779_tr
                           translation of PA0779
                           799
                           99.87
                           99.99
                           0
                           4095.0
     

     
     
20996
                           gb|AAG04168.1|AE004512_11
                           (AE004512) probable ATP-dependent protease [Pseudomonas aeruginosa PAO1]
                           799
                           99.87
                           99.99
                           0
                           4095.0
     

     
     
20997
                           gb|AAO57666.1|
                           (AE016871) ATP-dependent protease La [Pseudomonas syringae pv. tomato str. DC3000]
                           807
                           83.89
                           91.20
                           10
                           3523.0
     

     
     
20998
                           gb|AAN67065.1|AE016335_5
                           (AE016779) ATP-dependent protease La [Pseudomonas putida KT2440]
                           813
                           83.51
                           91.38
                           22
                           3512.0
     

     
     
21002
                           dbj|BAA98239.1|
                           (AP002545) Lon ATP-dependent protease [Chlamydophila pneumoniae J138]
                           827
                           48.48
                           66.74
                           36
                           1982.0
     

     






      

          
GC ORFID: 43186How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0779Glimmer Score: 

          
Start: 144149Stop: 141750

          
Length: 2400


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0779 translation of PA0779Homolog Bit Score 1582.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6154 (ORF: BLASTX 1357.0), t_PA0779 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACCAGGACGTTAATCCCGAACACATCAGCGACGCGCAGCCCGCCGGCACCGGCCTGGTGCTGCCC 
GGCCAGACCCTGCCGACCACCCTCTACGTGATCCCGATCCACAACCGCCCCTTCTTCCCGGCGCAGGTGCTG 
CCGGTGATCGTCAACGAAGAACCCTGGGCGGAAACCCTCGAACTGGTGGCCAAGACCGACCACCATTCGCTG 
GCCCTGTTCTTCATGGACAATCCTCCGGAAGACCCGCGCCACTTCGACGTCAACAGCCTGCCCGAGCACGGC 
ACGCTGGTCCGGGTGCACCATGCCTCGCGCGAGGGCGGCAAGCTGCAGTTCGTCGCCCAGGGCCTGTCGCGG 
GTGCGTATCCGGGGCTGGATCAAGCGCCATCGTCCGCCGTTCATGGTGGAGGTGGACTATCCGAAGACCCCG 
ATCGATCCCAGTGACGAAGTGAAGGCCTACGGCATGGCTCTGATCAATGCGATCAAGGAGCTGCTGCCGCTC 
AACCCGCTGTACAGCGAGGAACTGAAGAACTACCTGAACCGCTTCAGTCCCAACGACCCGTCGCCGCTCACC 
GACTTCGCCGCGGCCCTGACCACCGCGCCCGGCGGCGAACTGCAGGAAGTGCTGGACACCGTGCCGATCCTC 
AAGCGGATGGAGAAGGTCTTGCCGCTGCTGCGCAAGGAGGTGGAAGTCGCGCGCCTGCAGAAGGAGCTGTCC 
GCCGAGGTCAACCGCAAGATCGGCGAACACCAGCGCGAATTCTTCCTCAAGGAACAGTTGAAGATCATCCAG 
CAGGAGCTGGGCATCACCAAGGACGACAAGAGCGCCGACGCCGACGAATTCCGCGCCCGCCTGGAAGGCAAG 
GTGCTGCCCGAGCAGGCGCGCAAGCGTATCGACGAAGAGCTGAACAAGCTGTCGATCCTCGAGAGCGGCTCG 
CCCGAGTACGCAGTCACCCGCAACTACCTGGACTGGGCCACAGCCCTGCCCTGGGGCGTGTACGGCAAGGAC 
AAGCTCGACCTCAAGCATGCGCGCAAGGTCCTCGACAAGCATCACGCGGGCCTCGACGACATCAAGGATCGC 
ATCCTCGAATTCCTCGCCGTGGGTAGTTTCAAGGGCGAGATCGCCGGTTCCATCGTGCTCCTGGTCGGCCCG 
CCGGGGGTGGGCAAGACCAGCATCGGCAAATCCATCGCCGAGAGCCTCGGCCGGCCGTTCTACCGCTTCAGC 
GTCGGCGGCATGCGCGACGAGGCGGAGATCAAGGGCCACCGCCGCACCTACATCGGCGCCCTGCCCGGCAAG 
CTGGTGCAGGCGTTGAAGGAAGTCGAGGTGATGAACCCGGTGATCATGCTCGACGAAATCGACAAGCTCGGC 
GCCAGCTACCAGGGCGACCCGGCCTCGGCGCTGCTGGAAACCCTCGACCCGGAGCAGAACGTCGAATTCCTC 
GACCACTACCTGGACCTGCGCCTGGACCTGTCCAAGGTGCTGTTCGTCTGCACCGCCAACACCCTCGACTCG 
ATCCCCGGACCGCTCCTCGACCGGATGGAAGTGATCCGCCTGTCCGGCTACATCTCCGAGGAAAAACTGGCC 
ATCGCCAAGCGTCACCTGTGGCCCAAGCAGTTGGAAAAGGCCGGCGTGCCCAAGGGCCGCCTGAGCATCAGC 
GATGCCGCGCTGCGTGCGGTGATCGAGGGCTATGCGCGGGAAGCCGGGGTGCGCCAGTTGGAGAAACAGCTC 
GGCAAGCTGGTGCGCAAGTCGGTGGTCAAGCTGCTGGAGGATCCCGAGTCGAAGGTGAAGATCGGTCCCAGG 
GACCTCGAGGACTACCTCGGCATGCCGGTGTTCCGCAGCGAGCAGGTGCTTTCCGGGATCGGTGTGATCACC 
GGGCTGGCCTGGACCAGCATGGGCGGCGCCACCCTGCCGATCGAGGCGACCCGCATCCACACGCTGAACCGT 
GGCTTCAAGCTCACCGGCCAGCTCGGCGACGTGATGAAGGAATCCGCCGAGATCGCCTATAGCTACATCGGC 
TCGCACCTGAAGAAGTATGGCGGCGACCCGACCTTCTTCGACCAGGCCTTCGTCCACCTGCACGTGCCGGAA 
GGCGCCACGCCCAAGGATGGCCCCAGCGCCGGCGTCACCATGGCCAGCGCCCTGCTCTCCCTGGCGCGCAAC 
CAGGTGCCGAAGAAAGGCGTGGCGATGACCGGCGAACTGACCCTGACCGGCCAGGTCCTGCCCATCGGCGGG 
GTCCGCGAGAAGGTGATCGCCGCGCGCCGGCAGAAGATCTTCGAGCTGATCCTGCCGGAAGCCAACCGCGGC 
CACTTCGAAGAGTTGCCCGACTATCTCAAGGAAGGGCTGACCGTGCATTTCGCCAAGCGCTACGGCGACGTG 
GCCAAGGTGCTGTTCCCGGCCTGA