ViewGene
Locus Name:
GeneID:
Location:

GeneID:1836
TrivialName: PA14_01360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01360
PAO1 Ortholog Locus:PA0112
Sequence Length:1074
Protein Length:357
Start: 131135
Stop: 132208
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03502.1|AE004449_11 (AE004449) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 356/357 (99%), Positives = 356/357 (99%)
Sequence:
ATGTCAGGCGCAACCCGCAAACCCGGTTTCACCGTCGCCGTGCTGGCGACCCTGCTGGCCGCCGTGGTGGTC
CTGCTCGGCGCCTATACCCGGCTGACCCACGCCGGCCTCGGCTGTCCGGACTGGCCAGGCTGCTACGGCTTC
GTCCACGTGCCGCTGAGCGAGGCGCAACTGGCCCACGCCGAACTGCACTTCCCCGACGCCCCGGTGGAGGCG
CAGAAGGGCTGGAACGAGATGATCCACCGCTATTTCGCCGGCGCCCTCGGCCTGCTCATCCTTGGCCTGGCG
TTGCATGCGCTGGTCCGCCGCGGGCGCGACGGCCAACCGCTGAAGCTGCCGCTGCTGCTGCTCGCGGTGGTG
ATCGCGCAGGCCGCCTTCGGCATGTGGACGGTGACCCTCAAGCTCTGGCCGCAGGTGGTCACCGCCCATCTG
CTCGGCGGCTTCACCACCCTGGCGCTGCTCTTTCTCCTCGCCCTGCGCCTCTCCGGACGCTTCGCGGCGCGG
CGCTACCCGGCGGCGACCCGCGGCCTGGCGGGGCTGGCCCTGTTCCTGGTGATCGGCCAGATCGCCCTCGGC
GGCTGGGTCAGCAGCAACTATGCGGCGGTGGCCTGCATCGACCTGCCCACCTGCCATGGCGAGTGGTGGCCG
CGGATGGACTTCGCCAACGGCTTCCACCTGACCCAGCACATCGGCCCCAACTACCTCGGCGGCCAGCTCGAC
AGCGACGCGCGCACGGCGATCCACATGACCCACCGGATCGGCGCGCTGTGCGTGACCCTGGTCCTCCTGCTG
CTCGCCTGGCGCCTGCAGCGCAGCGGCCTGGTCTGGCCGACCGCGCTGATGCTGCTCGGCCTGTCGCTGCAG
ATCGGCCTGGGCATCAGCAACGTGCTGCTGCACCTGCCGCTGCCGGTGGCGGTGGCGCACAACGGCGGTGGC
GCCCTGCTGCTGCTCAGCCTGGTGCTGGTCAACTATCGCCTGCGCGCGCCGGCCAGCGTCCGCGCGCCGGCA
CCGTCGCCGCAGCGCGTGCGCCGCACGCTGCCGCCGGCGCAAGGTTCGCGGCTGAAGGCCGCCTGA
Translation:
MSGATRKPGFTVAVLATLLAAVVVLLGAYTRLTHAGLGCPDWPGCYGFVHVPLSEAQLAHAELHFPDAPVEA
QKGWNEMIHRYFAGALGLLILGLALHALVRRGRDGQPLKLPLLLLAVVIAQAAFGMWTVTLKLWPQVVTAHL
LGGFTTLALLFLLALRLSGRFAARRYPAATRGLAGLALFLVIGQIALGGWVSSNYAAVACIDLPTCHGEWWP
RMDFANGFHLTQHIGPNYLGGQLDSDARTAIHMTHRIGALCVTLVLLLLAWRLQRSGLVWPTALMLLGLSLQ
IGLGISNVLLHLPLPVAVAHNGGGALLLLSLVLVNYRLRAPASVRAPAPSPQRVRRTLPPAQGSRLKAA*
AnnotationID:1845GeneID:1836
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome oxidase assembly protein
Cell Localization:()
Synonyms:ctaA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative cytochrome aa3 oxidase assembly protein
Functional Category Confidence Code:5
COGs:COG1612
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65743.1|AE016200_7 (AE016774) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 359

 Score =  500 bits (1288), Expect = e-141
 Identities = 243/338 (71%), Positives = 283/338 (83%), Gaps = 1/338 (0%)

>gb|AAN57573.1|AE015893_2 (AE015893) cytochrome oxidase assembly protein, putative
           [Shewanella oneidensis MR-1]
          Length = 330

 Score =  298 bits (762), Expect = 4e-80
 Identities = 160/315 (50%), Positives = 211/315 (66%), Gaps = 6/315 (1%)

>dbj|BAC61886.1| (AP005085) putative cytochrome c oxidase assembly protein [Vibrio
           parahaemolyticus]
          Length = 339

 Score =  248 bits (633), Expect = 4e-65
 Identities = 141/314 (44%), Positives = 190/314 (60%), Gaps = 9/314 (2%)






 
Structural Features:
COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 323 residues,  96.3% aligned
Score =  169 bits (429), Expect = 5e-43
Identities = 102/346 (29%), Positives = 143/346 (41%), Gaps = 44/346 (12%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20822




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33488




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1836_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1836
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3220
                           PA0112_tr
                           translation of PA0112
                           357
                           99.71
                           99.71
                           0
                           1844.0
     

     
     
99834
                           gb|AAG03502.1|AE004449_11
                           (AE004449) hypothetical protein PA0112 [Pseudomonas aeruginosa PAO1]
                           357
                           99.71
                           99.71
                           0
                           1844.0
     

     
     
99835
                           gb|AAN65743.1|AE016200_7
                           (AE016774) membrane protein, putative [Pseudomonas putida KT2440]
                           367
                           66.75
                           77.92
                           18
                           1281.0
     

     
     
99836
                           gb|AAN57573.1|AE015893_2
                           (AE015893) cytochrome oxidase assembly protein, putative [Shewanella oneidensis MR-1]
                           366
                           46.17
                           60.65
                           45
                           769.0
     

     
     
99839
                           gb|AAQ58282.1|
                           (AE016912) cytochrome aa3 oxidase assembly protein [Chromobacterium violaceum ATCC 12472]
                           369
                           44.17
                           54.47
                           38
                           658.0
     

     






      

          
GC ORFID: 44838How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0112Glimmer Score: 

          
Start: 5932474Stop: 5933547

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0112 translation of PA0112Homolog Bit Score 714.0

          
Other Homologs:  t_PA0112 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGGCGCAACCCGCAAACCCGGTTTCACCGTCGCCGTGCTGGCGACCCTGCTGGCCGCCGTGGTGGTC 
CTGCTCGGCGCCTATACCCGGCTGACCCACGCCGGCCTCGGCTGTCCGGACTGGCCAGGCTGCTACGGCTTC 
GTCCACGTGCCGCTGAGCGAGGCGCAACTGGCCCACGCCGAACTGCACTTCCCCGACGCCCCGGTGGAGGCG 
CAGAAGGGCTGGAACGAGATGATCCACCGCTATTTCGCCGGCGCCCTCGGCCTGCTCATCCTTGGCCTGGCG 
TTGCATGCGCTGGTCCGCCGCGGGCGCGACGGCCAACCGCTGAAGCTGCCGCTGCTGCTGCTCGCGGTGGTG 
ATCGCGCAGGCCGCCTTCGGCATGTGGACGGTGACCCTCAAGCTCTGGCCGCAGGTGGTCACCGCCCATCTG 
CTCGGCGGCTTCACCACCCTGGCGCTGCTCTTTCTCCTCGCCCTGCGCCTCTCCGGACGCTTCGCGGCGCGG 
CGCTACCCGGCGGCGACCCGCGGCCTGGCGGGGCTGGCCCTGTTCCTGGTGATCGGCCAGATCGCCCTCGGC 
GGCTGGGTCAGCAGCAACTATGCGGCGGTGGCCTGCATCGACCTGCCCACCTGCCATGGCGAGTGGTGGCCG 
CGGATGGACTTCGCCAACGGCTTCCACCTGACCCAGCACATCGGCCCCAACTACCTCGGCGGCCAGCTCGAC 
AGCGACGCGCGCACGGCGATCCACATGACCCACCGGATCGGCGCGCTGTGCGTGACCCTGGTCCTCCTGCTG 
CTCGCCTGGCGCCTGCAGCGCAGCGGCCTGGTCTGGCCGACCGCGCTGATGCTGCTCGGCCTGTCGCTGCAG 
ATCGGCCTGGGCATCAGCAACGTGCTGCTGCACCTGCCGCTGCCGGTGGCGGTGGCGCACAACGGCGGTGGC 
GCCCTGCTGCTGCTCAGCCTGGTGCTGGTCAACTATCGCCTGCGCGCGCCGGCCAGCGTCCGCGCGCCGGCA 
CCGTCGCCGCAGCGCGTGCGCCGCACGCTGCCGCCGGCGCAAGGTTCGCGGCTGAAGGCCGCCTGA