ViewGene
Locus Name:
GeneID:
Location:

GeneID:1835
TrivialName: PA14_64030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64030
PAO1 Ortholog Locus:PA4842
Sequence Length:1071
Protein Length:356
Start: 5706378
Stop: 5705308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08227.1|AE004897_5 (AE004897) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 355/356 (99%), Positives = 356/356 (100%)
Sequence:
ATGCTGGACTGGAAGAAGCGTCGTGGGACCATGCGCGATCGCGTGGACAATTCCGTGGATGATGTGCGTACC
TACTTCGGCGGCCCCTGGCTGGTGCGCGTGGTGGGAGGCCTGCTGGGCGTCTACCTGCTGGTGGCGATGCTG
GTCGGCTGGTACTGGAGCCAGGAACCCGACCTGTTCCCCGTGCAGCAGGACGCCCAGGCCGCCGCCGAGCGC
GCCGGGCGGCAGATGGTCACCGGCTACACCACGGTGGAGACCCTCAAGGAAGTGGTCGACACCCTGCTGACC
AAGCCGGGCGGCTACATCTCCAACGACATCTTCCCGCCGGGCATCTGGATGGACAACATGCCCAGCTGGGAG
TATGGCGTGCTGGTCCAGGTGCGTGACATCAGCCGGGCGCTGCGCAAGGATTTCGCCCGTTCGCAGTCGCAG
TCCACCGAGGACGCCGACCTGGCTCGCGCCGAGCCGCGCTTCAACTTCGACAACAAGAGCTGGGCGCTGCCG
GCGTCCGAGTCGGAGTACCAGGAAGGCATCAAGTCGCTGGACCGCTACCTGGCCCGCCTGTCCGACCCGAAC
CAGCCCAACGCGCAGTTCTATGCCCGCGCCGACAACCTGAACAACTGGCTGGGCGACGTCGCCACCCGCCTG
GGCTCGCTGTCCCAGCGCCTGTCGGCGAGTGTCGGCCGGGTCAAGCTGAACACCAACATCAAGAACCCCGAA
GAAGTACAGCCGGGCGAGGCGCCCAAGGTCGAGGAAGTGGTCCAGGAAACCCCCTGGCTGCAGATCGACAAC
GTCTTCTACGAGGCCCGTGGCCAGGCCTGGGCGCTGTCGCACCTGCTGCGCGCCATCGAGGTCGACTTCGCC
GACGTGCTGGCGAAGAAGAACGCCACGGTCAGCGTGCGGCAGATCATCCGCGAGCTGGAGGCCGCGCAGGAG
CCGCTGTGGAGCCCGATGGTGCTGAACGGCAGCGGCTACGGCATCCTGGCCAACCACTCGCTGGTGATGGCC
AACTACATTTCCCGCGCCAACGCCGCGGTGATCGACCTGCGCCAGCTGCTTTCCCAGGGCTGA
Translation:
MLDWKKRRGTMRDRVDNSVDDVRTYFGGPWLVRVVGGLLGVYLLVAMLVGWYWSQEPDLFPVQQDAQAAAER
AGRQMVTGYTTVETLKEVVDTLLTKPGGYISNDIFPPGIWMDNMPSWEYGVLVQVRDISRALRKDFARSQSQ
STEDADLARAEPRFNFDNKSWALPASESEYQEGIKSLDRYLARLSDPNQPNAQFYARADNLNNWLGDVATRL
GSLSQRLSASVGRVKLNTNIKNPEEVQPGEAPKVEEVVQETPWLQIDNVFYEARGQAWALSHLLRAIEVDFA
DVLAKKNATVSVRQIIRELEAAQEPLWSPMVLNGSGYGILANHSLVMANYISRANAAVIDLRQLLSQG*
AnnotationID:1844GeneID:1835
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4842
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20820




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35206




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1835_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1835
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3219
                           PA4842_tr
                           translation of PA4842
                           356
                           99.71
                           99.99
                           0
                           1843.0
     

     
     
99830
                           gb|AAG08227.1|AE004897_5
                           (AE004897) hypothetical protein PA4842 [Pseudomonas aeruginosa PAO1]
                           356
                           99.71
                           99.99
                           0
                           1843.0
     

     
     
99831
                           gb|AAN66191.1|AE016247_1
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           365
                           77.53
                           84.38
                           12
                           1426.0
     

     
     
99832
                           gb|AAO58268.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           359
                           75.48
                           85.23
                           3
                           1402.0
     

     
     
99833
                           gb|AAN56881.1|AE015823_3
                           (AE015823) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           357
                           51.26
                           66.94
                           36
                           907.0
     

     






      

          
GC ORFID: 44837How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4842Glimmer Score: 

          
Start: 4970058Stop: 4968988

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4842 translation of PA4842Homolog Bit Score 714.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5749 (ORF: BLASTX 545.0), t_PA4842 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGACTGGAAGAAGCGTCGTGGGACCATGCGCGATCGCGTGGACAATTCCGTGGATGATGTGCGTACC 
TACTTCGGCGGCCCCTGGCTGGTGCGCGTGGTGGGAGGCCTGCTGGGCGTCTACCTGCTGGTGGCGATGCTG 
GTCGGCTGGTACTGGAGCCAGGAACCCGACCTGTTCCCCGTGCAGCAGGACGCCCAGGCCGCCGCCGAGCGC 
GCCGGGCGGCAGATGGTCACCGGCTACACCACGGTGGAGACCCTCAAGGAAGTGGTCGACACCCTGCTGACC 
AAGCCGGGCGGCTACATCTCCAACGACATCTTCCCGCCGGGCATCTGGATGGACAACATGCCCAGCTGGGAG 
TATGGCGTGCTGGTCCAGGTGCGTGACATCAGCCGGGCGCTGCGCAAGGATTTCGCCCGTTCGCAGTCGCAG 
TCCACCGAGGACGCCGACCTGGCTCGCGCCGAGCCGCGCTTCAACTTCGACAACAAGAGCTGGGCGCTGCCG 
GCGTCCGAGTCGGAGTACCAGGAAGGCATCAAGTCGCTGGACCGCTACCTGGCCCGCCTGTCCGACCCGAAC 
CAGCCCAACGCGCAGTTCTATGCCCGCGCCGACAACCTGAACAACTGGCTGGGCGACGTCGCCACCCGCCTG 
GGCTCGCTGTCCCAGCGCCTGTCGGCGAGTGTCGGCCGGGTCAAGCTGAACACCAACATCAAGAACCCCGAA 
GAAGTACAGCCGGGCGAGGCGCCCAAGGTCGAGGAAGTGGTCCAGGAAACCCCCTGGCTGCAGATCGACAAC 
GTCTTCTACGAGGCCCGTGGCCAGGCCTGGGCGCTGTCGCACCTGCTGCGCGCCATCGAGGTCGACTTCGCC 
GACGTGCTGGCGAAGAAGAACGCCACGGTCAGCGTGCGGCAGATCATCCGCGAGCTGGAGGCCGCGCAGGAG 
CCGCTGTGGAGCCCGATGGTGCTGAACGGCAGCGGCTACGGCATCCTGGCCAACCACTCGCTGGTGATGGCC 
AACTACATTTCCCGCGCCAACGCCGCGGTGATCGACCTGCGCCAGCTGCTTTCCCAGGGCTGA