ViewGene
Locus Name:
GeneID:
Location:

GeneID:1832
TrivialName: PA14_26810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26810
PAO1 Ortholog Locus:PA2882
Sequence Length:1116
Protein Length:371
Start: 2333988
Stop: 2335103
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06270.1|AE004714_7 (AE004714) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 370/371 (99%), Positives = 371/371 (100%)
Sequence:
ATGCAGCGTTTCGGCCGCGACCTCTGGGGCCGCCATCCGGTGCGCGACGTCATGAACCGGGCGCCCCTCAGC
GTCTCCCTCGGCGCCAGCCTGGAAGAGGCGGCGCAGCAGGTCACCGGTCGCCTGCAGTATCCGATCACCGAG
GACTTCGCCCTGGTCGACGAAGAGGGCCGCTACCGTGGCCTGGGCACCGTGCTCGACCTGCTGAAGGCCATG
GAGGCGCGCATCGCCCAGCGCAACCGGGTGCTGCGCAAGGCGCTGGTGGACCTCAAGGAGTCCCAGGCGCAA
CTGGTGCAGTCGGAAAAGATGGCTTCGCTCGGGCAGATGGTGGCCGGGGTCGCACACGAGCTGAACACGCCG
CTCGGCTACGTCGGCAACAACCTGGCGCTGCTGGAGGAGCTGAGCGATCCCTTGTTGCGCCTGGCCGATGCC
CAGGCGGCGCTGGTCGACTGCCTGGGCGACCCGCAGTGCGACGAAGCGCGCCTGGCGCAGGCGCTGCAGGCG
GCCGACGCGGTACGCCGCGAGGCCGCCGTCGAACAGTTGCGCGAGGACCTGCGGCAGTTGTTCGTCGATACC
CGCTACGGCCTCGGCCAGATCGGCGAGCTGGTTTCCGGGCTCAAGGACTTCGCCCGCCTGGACCGCGCCTTC
AGCGAGGAGGTCGACCTCAACGACTGCGTGCGCAACGCCTTGCTGATCGCCCGCACCGCCATCAAGGACAAG
GCCGAGATCAGCAGCCAGCTCGGCGAGCTGCCGCTTATCGCCTGCGCGCCGTCGCAGATCAACCAGGTGCTG
CTGAACCTGCTGACCAACGCCGCGCAGGCCATGGAGCGTTTCGGCCGCATCCTGCTGAAGAGCTGGGCCGAC
GAGCGCCAGGTGTTCCTCTCCGTGCAGGACAACGGCAAGGGCATGCCCGCCGAGGTCCTCGGGCGGATCTTC
GACCCGTTCTTCACCACCAAGCCGGTGGGGCAGGGCACCGGGCTCGGCCTGTCGATCAGCTACAAGATCATC
CAGCAACATGGCGGGACCATCCGCGTGGCCTCCGAACCGGGCCGCGGAACCCGCTTCCTCATCAGCCTGCCG
CGAGAGCAGGCCCGCGAACTGAAACGGAGCGCCTGA
Translation:
MQRFGRDLWGRHPVRDVMNRAPLSVSLGASLEEAAQQVTGRLQYPITEDFALVDEEGRYRGLGTVLDLLKAM
EARIAQRNRVLRKALVDLKESQAQLVQSEKMASLGQMVAGVAHELNTPLGYVGNNLALLEELSDPLLRLADA
QAALVDCLGDPQCDEARLAQALQAADAVRREAAVEQLREDLRQLFVDTRYGLGQIGELVSGLKDFARLDRAF
SEEVDLNDCVRNALLIARTAIKDKAEISSQLGELPLIACAPSQINQVLLNLLTNAAQAMERFGRILLKSWAD
ERQVFLSVQDNGKGMPAEVLGRIFDPFFTTKPVGQGTGLGLSISYKIIQQHGGTIRVASEPGRGTRFLISLP
REQARELKRSA*
AnnotationID:1841GeneID:1832
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 08:08:27
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor histidine kinase
Cell Localization:()
Synonyms:PA2882
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,cd00075,pfam02518
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]

smart00387, HATPase_c, Histidine kinase-like ATPases

cd00075, HATPase_c, Histidine kinase-like ATPases

pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.






   
Genomic Context:






   
Comment:


















    ReferenceID:3667




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20814




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36193




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1832_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1832
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3214
                           PA2882_tr
                           translation of PA2882
                           371
                           99.73
                           99.99
                           0
                           1843.0
     

     
     
99693
                           gb|AAG06270.1|AE004714_7
                           (AE004714) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           371
                           99.73
                           99.99
                           0
                           1843.0
     

     
     
3215
                           PA2571_tr
                           translation of PA2571
                           510
                           29.01
                           42.94
                           179
                           583.0
     

     
     
99694
                           gb|AAG05959.1|AE004685_5
                           (AE004685) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           510
                           29.01
                           42.94
                           179
                           583.0
     

     
     
99695
                           gb|AAN68553.1|AE016487_7
                           (AE016785) sensor histidine kinase/response regulator [Pseudomonas putida KT2440]
                           561
                           24.06
                           35.82
                           246
                           543.0
     

     






      

          
GC ORFID: 44834How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2882Glimmer Score: 

          
Start: 2619938Stop: 2618823

          
Length: 1116


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2882 translation of PA2882Homolog Bit Score 714.0

          
Other Homologs:  t_PA2882 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCGTTTCGGCCGCGACCTCTGGGGCCGCCATCCGGTGCGCGACGTCATGAACCGGGCGCCCCTCAGC 
GTCTCCCTCGGCGCCAGCCTGGAAGAGGCGGCGCAGCAGGTCACCGGTCGCCTGCAGTATCCGATCACCGAG 
GACTTCGCCCTGGTCGACGAAGAGGGCCGCTACCGTGGCCTGGGCACCGTGCTCGACCTGCTGAAGGCCATG 
GAGGCGCGCATCGCCCAGCGCAACCGGGTGCTGCGCAAGGCGCTGGTGGACCTCAAGGAGTCCCAGGCGCAA 
CTGGTGCAGTCGGAAAAGATGGCTTCGCTCGGGCAGATGGTGGCCGGGGTCGCACACGAGCTGAACACGCCG 
CTCGGCTACGTCGGCAACAACCTGGCGCTGCTGGAGGAGCTGAGCGATCCCTTGTTGCGCCTGGCCGATGCC 
CAGGCGGCGCTGGTCGACTGCCTGGGCGACCCGCAGTGCGACGAAGCGCGCCTGGCGCAGGCGCTGCAGGCG 
GCCGACGCGGTACGCCGCGAGGCCGCCGTCGAACAGTTGCGCGAGGACCTGCGGCAGTTGTTCGTCGATACC 
CGCTACGGCCTCGGCCAGATCGGCGAGCTGGTTTCCGGGCTCAAGGACTTCGCCCGCCTGGACCGCGCCTTC 
AGCGAGGAGGTCGACCTCAACGACTGCGTGCGCAACGCCTTGCTGATCGCCCGCACCGCCATCAAGGACAAG 
GCCGAGATCAGCAGCCAGCTCGGCGAGCTGCCGCTTATCGCCTGCGCGCCGTCGCAGATCAACCAGGTGCTG 
CTGAACCTGCTGACCAACGCCGCGCAGGCCATGGAGCGTTTCGGCCGCATCCTGCTGAAGAGCTGGGCCGAC 
GAGCGCCAGGTGTTCCTCTCCGTGCAGGACAACGGCAAGGGCATGCCCGCCGAGGTCCTCGGGCGGATCTTC 
GACCCGTTCTTCACCACCAAGCCGGTGGGGCAGGGCACCGGGCTCGGCCTGTCGATCAGCTACAAGATCATC 
CAGCAACATGGCGGGACCATCCGCGTGGCCTCCGAACCGGGCCGCGGAACCCGCTTCCTCATCAGCCTGCCG 
CGAGAGCAGGCCCGCGAACTGAAACGGAGCGCCTGA