ViewGene

Locus Name:
GeneID:
Location:

GeneID:1831
TrivialName: PA14_51120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51120
PAO1 Ortholog Locus:PA1020
Sequence Length:1113
Protein Length:370
Start: 4544043
Stop: 4542931
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04409.1|AE004534_7 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 367/370 (99%), Positives = 368/370 (99%)
Sequence:
GTGCAGATGACGGACGGGCGGACGGCGTATCGACAGGAGGGCGAACAGATGAGTGAGCAAGATGAGTGGGCC
GGCGAGCGCGAGCAGCGTCTGCGGATGATCCGCGACAGCGCGGCTTCGCTGGTGCCGCGCGACGGCGACCTG
AGCCGCGTGCGCCGCGGTCGTTTCACCGGTAGCGGGGTGGACCGCCAGGCCTGGCGCGAGGTCTGCGCCATG
GGCTGGCCGGCGCTGCGCCTGGATGAAGCGTTGGGCGGCAGCGGCCTGGGCATGAGCGAATACGCGGCGTTG
CTGGAGGCGCTGGGGCGCGGCCTGCTGCCCGAGCCGCTGATCGAGGCCGGGCTGGTGGCGCCGCTGCTGCCG
GAAGACGAGCGCGTTGCGTTGCTGGCCGCTGAGCGGCTGGTCCTGCCGGCGGGCATCGCCTACCGCGATGGG
CGGCGGCGCCCTCGTATGCAGGAAGGGCGGCTGCACGGCGAAGTCGCTCACGTACATCTGGCTGGCGCCGCC
GATGCCTGGCTGGTGGCCTGCGAGCAGGGCCTGGCGCTGGTCGAGCGCGATGCCGATGGCGTGGAACTGCTC
TGCGAGGCGACCCAGGATGGCGCTCACCTGGCGCGCCTGCGTTTCCGCGATGCGCCGGCACGGTGGTTGTCC
GGCGAGGTAACGGAACAGGTTCTGGACGAGGCAGGGCTGGCCTGCGCGGCCTATCTGGTCGGACTGATGGAT
GGCGCCTTCGAGCGAACCCTGGAGTACCTCAAGGTACGTCGCCAGTTCGGCCGCGAGATCGGCAGTTTCCAG
GCGCTGCAGCACCGCATGGTCGACCTGAGGATCCAGATCGAACTGTCGCGCGCCATGGTCGAGCAGGCTGCC
GCCGCGATCGATGCCGGGGCGTCGGAAAGCGAGCGCCAGCGGCAGGTCTCCAGCGCTCGGGTACGGGCCTCG
GAAGCGGCTCTGCTGGTGACCCGCCAGGCCATCCAGTTGCACGGCGGCATTGGCTACACCGACGAGGCGGAC
ATCGGCCTGTTCCTGCGCCGCGCCATGGTACTGCTCAATGCCCACGGCTCACTGGCGTTCCACAAGGCGCGC
TACGCCGCGCTGCTACAGCGGGAGGTGGCCTGA
Translation:
MQMTDGRTAYRQEGEQMSEQDEWAGEREQRLRMIRDSAASLVPRDGDLSRVRRGRFTGSGVDRQAWREVCAM
GWPALRLDEALGGSGLGMSEYAALLEALGRGLLPEPLIEAGLVAPLLPEDERVALLAAERLVLPAGIAYRDG
RRRPRMQEGRLHGEVAHVHLAGAADAWLVACEQGLALVERDADGVELLCEATQDGAHLARLRFRDAPARWLS
GEVTEQVLDEAGLACAAYLVGLMDGAFERTLEYLKVRRQFGREIGSFQALQHRMVDLRIQIELSRAMVEQAA
AAIDAGASESERQRQVSSARVRASEAALLVTRQAIQLHGGIGYTDEADIGLFLRRAMVLLNAHGSLAFHKAR
YAALLQREVA*
AnnotationID:1840GeneID:1831
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA1020
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00567, COG1960, cd01158
Secondary Functional Category(ies):Fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). Score: 121, 9e-29
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]. Score: 108, 9e-25
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD). Score: 103, 3e-23
Genomic Context:
Comment:
ReferenceID:14439
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17007
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1020_CDS.cgi
URL:
ReferenceID:20812
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1831

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3213 PA1020_tr translation of PA1020 370 99.18 99.45 0 1844.0
99692 gb|AAG04409.1|AE004534_7 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 370 98.91 99.45 0 1841.0
GC ORFID: 44833How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1020Glimmer Score:
Start: 409865Stop: 410977
Length: 1113
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1020 translation of PA1020Homolog Bit Score 714.0
Other Homologs: t_PA1020 (ORF: GLIMMER)
GC ORF Sequence
GTGCAGATGACGGACGGGCGGACGGCGTATCGACAGGAGGGCGAACAGATGAGTGAGCAAGATGAGTGGGCC
GGCGAGCGCGAGCAGCGTCTGCGGATGATCCGCGACAGCGCGGCTTCGCTGGTGCCGCGCGACGGCGACCTG
AGCCGCGTGCGCCGCGGTCGTTTCACCGGTAGCGGGGTGGACCGCCAGGCCTGGCGCGAGGTCTGCGCCATG
GGCTGGCCGGCGCTGCGCCTGGATGAAGCGTTGGGCGGCAGCGGCCTGGGCATGAGCGAATACGCGGCGTTG
CTGGAGGCGCTGGGGCGCGGCCTGCTGCCCGAGCCGCTGATCGAGGCCGGGCTGGTGGCGCCGCTGCTGCCG
GAAGACGAGCGCGTTGCGTTGCTGGCCGCTGAGCGGCTGGTCCTGCCGGCGGGCATCGCCTACCGCGATGGG
CGGCGGCGCCCTCGTATGCAGGAAGGGCGGCTGCACGGCGAAGTCGCTCACGTACATCTGGCTGGCGCCGCC
GATGCCTGGCTGGTGGCCTGCGAGCAGGGCCTGGCGCTGGTCGAGCGCGATGCCGATGGCGTGGAACTGCTC
TGCGAGGCGACCCAGGATGGCGCTCACCTGGCGCGCCTGCGTTTCCGCGATGCGCCGGCACGGTGGTTGTCC
GGCGAGGTAACGGAACAGGTTCTGGACGAGGCAGGGCTGGCCTGCGCGGCCTATCTGGTCGGACTGATGGAT
GGCGCCTTCGAGCGAACCCTGGAGTACCTCAAGGTACGTCGCCAGTTCGGCCGCGAGATCGGCAGTTTCCAG
GCGCTGCAGCACCGCATGGTCGACCTGAGGATCCAGATCGAACTGTCGCGCGCCATGGTCGAGCAGGCTGCC
GCCGCGATCGATGCCGGGGCGTCGGAAAGCGAGCGCCAGCGGCAGGTCTCCAGCGCTCGGGTACGGGCCTCG
GAAGCGGCTCTGCTGGTGACCCGCCAGGCCATCCAGTTGCACGGCGGCATTGGCTACACCGACGAGGCGGAC
ATCGGCCTGTTCCTGCGCCGCGCCATGGTACTGCTCAATGCCCACGGCTCACTGGCGTTCCACAAGGCGCGC
TACGCCGCGCTGCTACAGCGGGAGGTGGCCTGA