ViewGene
Locus Name:
GeneID:
Location:

GeneID:1830
TrivialName: PA14_71600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71600
PAO1 Ortholog Locus:PA5425
Sequence Length:1083
Protein Length:360
Start: 6379164
Stop: 6378082
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08810.1|AE004955_4 (AE004955) phosphoribosylaminoimidazole carboxylase [Pseudomonas aeruginosa PAO1]
Identities = 359/360 (99%), Positives = 359/360 (99%)
Sequence:
ATGAAAATCGGTGTCATCGGTGGCGGCCAGCTGGGCCGCATGCTGGCCCTGGCGGGAACCCCGCTGGGCATG
AACTTCGCTTTCCTCGACCCGGCGCCGGACGCCTGCGCGGCCTCCCTGGGCGAGCACATCCGCGCCGACTAC
GGCGACCAGGAGCACCTGCGGCAACTGGCCGACGAGGTCGACCTGGTGACCTTCGAGTTCGAGAGCGTGCCG
GCGGAAACCGTGGCCTTCCTCTCCCAGTTCGTGCCGGTCTACCCGAACGCCGAGTCGCTGCGCATCGCCCGC
GACCGCTGGTTCGAGAAGTCGATGTTCAAGGACCTCGGCATTCCCACCCCGGACTTCGCTGACGTCCAGTCC
CAGGCTGACCTCGATGCCGCCGCGGCCGCCATCGGCCTGCCGGCGGTGCTCAAGACCCGCACCCTGGGCTAC
GACGGCAAGGGCCAGAAGGTCCTGCGCCAGCCGGCCGACGTGCAGGGCGCGTTCGCCGAACTGGGCAGCGTG
CCGTGCATCCTCGAGGGCTTCGTGCCGTTCACCGGGGAAGTCTCACTGGTGGCGGTGCGTGCCCGCGATGGC
GAGACGCGTTTCTACCCGCTGGTGCACAACACCCACGACAGCGGCATCCTCAAGCTCTCCGTGGCCAGCAGC
GGGCATCCGTTGCAGGCGCTGGCCGAGGACTACGTCGGCCGCGTGCTGGCCCGGCTCGACTACGTCGGCGTG
CTGGCCTTCGAGTTCTTCGAGGTGGACGGCGGCCTGAAGGCCAACGAGATCGCCCCGCGCGTGCACAACTCC
GGGCACTGGACCATCGAAGGCGCCGAGTGCAGCCAGTTCGAGAACCACCTGCGCGCCGTCGCCGGCCTGCCG
CTGGGCTCGACCGCCAAGGTCGGCGAGAGCGCGATGCTCAATTTCATCGGCGCGGTGCCCCCGGTGGATCAG
GTGGTCGCCGTCGCCGATTGCCACCTGCATCACTACGGCAAGGCCTTCAAGAACGGCCGCAAGGTCGGCCAC
GCCACCCTGCGCTGTGCCGACCGGGCGACGCTGCAGGCGCGCATCGCCGAGGTCGAGGCGCTGATCGAGGCG
TGA
Translation:
MKIGVIGGGQLGRMLALAGTPLGMNFAFLDPAPDACAASLGEHIRADYGDQEHLRQLADEVDLVTFEFESVP
AETVAFLSQFVPVYPNAESLRIARDRWFEKSMFKDLGIPTPDFADVQSQADLDAAAAAIGLPAVLKTRTLGY
DGKGQKVLRQPADVQGAFAELGSVPCILEGFVPFTGEVSLVAVRARDGETRFYPLVHNTHDSGILKLSVASS
GHPLQALAEDYVGRVLARLDYVGVLAFEFFEVDGGLKANEIAPRVHNSGHWTIEGAECSQFENHLRAVAGLP
LGSTAKVGESAMLNFIGAVPPVDQVVAVADCHLHHYGKAFKNGRKVGHATLRCADRATLQARIAEVEALIEA
*
AnnotationID:1839GeneID:1830
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 14:02:19
Gene Name:purK
Confidence Code:1
GeneProduct:phosphoribosylaminoimidazole carboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0026
Secondary Functional Category(ies):
EC Number:4.1.1.21
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70900.1|AE016734_4 (AE016794) phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Pseudomonas putida KT2440]
          Length = 360

 Score =  652 bits (1682), Expect = 0.0
 Identities = 323/358 (90%), Positives = 338/358 (94%)

>gb|AAO58912.1| (AE016876) phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 360

 Score =  647 bits (1668), Expect = 0.0
 Identities = 319/359 (88%), Positives = 338/359 (94%)

>gb|AAM37525.1| (AE011907) phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 381

 Score =  353 bits (907), Expect = 7e-97
 Identities = 188/363 (51%), Positives = 239/363 (65%), Gaps = 6/363 (1%)








 
Structural Features:
COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 
[Nucleotide transport and metabolism]
CD-Length = 375 residues,  98.4% aligned
Score =  444 bits (1144), Expect = 6e-126
Identities = 181/369 (49%), Positives = 233/369 (63%), Gaps = 9/369 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20810




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34684




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1830_cdd.html


    		




 
URL:

















    ReferenceID:35638




  
Author/Investigator(s):
        Wang J, Mushegian A, Lory S, Jin S.





  
Title:
        Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10434-9.




  
PubMed:
        8816818


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10434-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8816818









           
Homologs By Global Alignment 

           

       



     
Gene ID:1830
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3212
                           PA5425_tr
                           translation of PA5425
                           360
                           99.72
                           99.72
                           0
                           1845.0
     

     
     
99669
                           gb|AAG08810.1|AE004955_4
                           (AE004955) phosphoribosylaminoimidazole carboxylase [Pseudomonas aeruginosa PAO1]
                           360
                           99.72
                           99.72
                           0
                           1845.0
     

     
     
99670
                           gb|AAB17258.1|
                           (U58364) PurK [Pseudomonas aeruginosa]
                           360
                           98.33
                           99.16
                           0
                           1824.0
     

     
     
99671
                           gb|AAN70900.1|AE016734_4
                           (AE016794) phosphoribosylaminoimidazole carboxylase, ATPase subunit [Pseudomonas putida KT2440]
                           360
                           89.72
                           93.88
                           0
                           1680.0
     

     
     
99672
                           gb|AAO58912.1|
                           (AE016876) phosphoribosylaminoimidazole carboxylase, ATPase subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           360
                           88.61
                           93.88
                           0
                           1667.0
     

     






      

          
GC ORFID: 44832How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5425Glimmer Score: 

          
Start: 5642853Stop: 5641771

          
Length: 1083


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5425 translation of PA5425Homolog Bit Score 715.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4188 (ORF: BLASTX 639.0), t_PA5425 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGGTGTCATCGGTGGCGGCCAGCTGGGCCGCATGCTGGCCCTGGCGGGAACCCCGCTGGGCATG 
AACTTCGCTTTCCTCGACCCGGCGCCGGACGCCTGCGCGGCCTCCCTGGGCGAGCACATCCGCGCCGACTAC 
GGCGACCAGGAGCACCTGCGGCAACTGGCCGACGAGGTCGACCTGGTGACCTTCGAGTTCGAGAGCGTGCCG 
GCGGAAACCGTGGCCTTCCTCTCCCAGTTCGTGCCGGTCTACCCGAACGCCGAGTCGCTGCGCATCGCCCGC 
GACCGCTGGTTCGAGAAGTCGATGTTCAAGGACCTCGGCATTCCCACCCCGGACTTCGCTGACGTCCAGTCC 
CAGGCTGACCTCGATGCCGCCGCGGCCGCCATCGGCCTGCCGGCGGTGCTCAAGACCCGCACCCTGGGCTAC 
GACGGCAAGGGCCAGAAGGTCCTGCGCCAGCCGGCCGACGTGCAGGGCGCGTTCGCCGAACTGGGCAGCGTG 
CCGTGCATCCTCGAGGGCTTCGTGCCGTTCACCGGGGAAGTCTCACTGGTGGCGGTGCGTGCCCGCGATGGC 
GAGACGCGTTTCTACCCGCTGGTGCACAACACCCACGACAGCGGCATCCTCAAGCTCTCCGTGGCCAGCAGC 
GGGCATCCGTTGCAGGCGCTGGCCGAGGACTACGTCGGCCGCGTGCTGGCCCGGCTCGACTACGTCGGCGTG 
CTGGCCTTCGAGTTCTTCGAGGTGGACGGCGGCCTGAAGGCCAACGAGATCGCCCCGCGCGTGCACAACTCC 
GGGCACTGGACCATCGAAGGCGCCGAGTGCAGCCAGTTCGAGAACCACCTGCGCGCCGTCGCCGGCCTGCCG 
CTGGGCTCGACCGCCAAGGTCGGCGAGAGCGCGATGCTCAATTTCATCGGCGCGGTGCCCCCGGTGGATCAG 
GTGGTCGCCGTCGCCGATTGCCACCTGCATCACTACGGCAAGGCCTTCAAGAACGGCCGCAAGGTCGGCCAC 
GCCACCCTGCGCTGTGCCGACCGGGCGACGCTGCAGGCGCGCATCGCCGAGGTCGAGGCGCTGATCGAGGCG 
TGA