ViewGene
Locus Name:
GeneID:
Location:

GeneID:183
TrivialName: PA14_27140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27140
PAO1 Ortholog Locus:PA2858
Sequence Length:2493
Protein Length:830
Start: 2359402
Stop: 2356910
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06246.1|AE004712_6 (AE004712) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 828/830 (99%), Positives = 828/830 (99%)
Sequence:
GTGCCCCTCTCCCGCCTGCTGAGCCTCGCCGGTCGCCAATTGTTCCGCGAGTCGCGCAGCGGCGAGCTGCGC
GTGCTGTTCTTCGCCCTGCTGATCGCGGTCGCCTCGAGCACCGCCATCGGCTATTTCAGCGCCCGCCTGAAC
GGCGCCATGCTCACCCGCGCCGCCGAGTTCCTCGGCGCCGACCTGGTGCTCAACGGTACCCAGCCGGCAAGC
GCCGAACAGATCGAACGCGGCACCCGTCTGGGCCTGCGCCACGCCGACAGCGTCGAGTTTTCCAGCGTGATC
GCCACCGACCAGGGCATCCAGCTCAGCAGCATCAAGGCGGTCGGCGACCGCTACCCCCTGCGCGGGCAGCTC
AAGAGCGCTGCCGCGCCGTTCGCCGCCGAGCAGGCCGGCGGTCGTCCGCAGGCGGGCGAGGTATGGGTCGAA
TCGCGCCTGCTGGTCAGCCTCGACCTGAAGGTCGGCGACAGCATCGAGATCGGCCGCAAGCCGCTGCGCATC
GCGCGCATCCTTACCTACGAGCCGGACCGCGCCGGCGACTTCTACAGCCTGACGCCCCGCGCCATGATGAGC
CTGGCCGACCTCGATGCCACCGGGGTGGTCCAGCCGGGCAGCCGGGTGCGCTACCGCGATCTGTGGGAAGGC
CCGCCGGAAGCCCTCCAGGCCTATCGCCAGCAGGTCAAGGGCAGCCTCGCCGCCAACCAGCGCCTGCAGGAT
GCCCGCGACGGCAACCGCCAGGTGGGCGATGCCCTCGGCCGCGCCGAGCGCTACCTGAACCTGGCCAGCCTG
GCCGCGGTGCTGCTCGCCGGCGTCGCCGTGGCGCTGTCCGCCGCCCGTTTCGCTGCACGGCGCTACGACGCC
AGCGCACTGCTGCGCTGCCTCGGTCTGTCGCGCAGCGAAACCCTGCTCCTCTACGCGCTGCAACTGTTGCTG
CTGGGCCTGCTCGCCAGCGCCATCGGCGCCCTGCTCGGCTGGTTGGCGCAGCTCGGCCTGTTCCGCCTGCTC
GCCACGCTGCTGCCGCCGGACGTACCGGCCGGCGGCCTGTTCCCCGCCTTCGCCGGGATCGCCACCGGCCTG
GTAGCGCTGGCCGGCTTCGCCCTGCCGCCGCTGGCAGCCCTGGGCCGGGTACCGCCGTTGCGGGTCCTGCGC
AGCGACCTGCTGCCGGTGCCGATGCGCACCTGGATGGCCTACGCCTGCGCCCTGCTCGCCCTGGGCCTGATC
ATGTGGCGGTTGAGTCTCGACCTGAAGCTGACCCTCGCCCTGCTCGGCGGCGGCCTGGTCGCCACGCTGGTG
CTCGGCGCCCTCCTGCTGCTCGGCCTGAACGGCCTGCGCCGGGCACTGGCGCGTGCCAGCCTGTCATGGCGG
CTGGGACTCGGCCAGTTGTTGCGGCACCCGCTGGCCGCCGCCGGACAGAGCCTGGCCTTCGGCCTGATCCTG
CTGGCCATGGCCCTGATCGCCCTGCTTCGCGGCGAACTGCTGGATACCTGGCAGGCCCAGTTGCCGCCGGAC
GCCCCCAACCATTTCGCCCTGAACATCCTGCCGACGGAAAAGGACGCCTTCGAACGTCGCGTGCAAAAGCTC
TCCCCCGGCGCCGAGCCGCTGTTCCCCATGGTTCCCGGGCGCCTGGTAGCGGTGAACGGCAAGCCGGTCCAG
GCGCTCGACGAAGACGTGCGCAGCGAGCGTGCCCTGCAGCGCGACCTCGGCCTGACCTGGTCGGAGCGACTG
CCCTCCGGCAACCAGCTCACCGCCGGACGCTGGTGGAGCGCGCCGCAGCCGGGGGCCCTGCCGGGCGTGTCG
GTGGAAGAGAAGCTGGCCGCCAACCTGCGTATCCAGGTCGGCGACCGGCTCACCTTCAGCGTCGCCGGGCAG
AATCGCGAGGTCCAGGTCCAGAGCCTGCGCAAGGTGAAGTGGGACAATTTCCAGCCGAACTTCTTCATGGTC
TTCCAGCCCGGCACCCTGACCGACCTGCCGGTGACCTACCTGACCAGCTTCTACCTGCCGGCCAGCCAGGAA
CGCGACCTGATCGAACTGGCCCGCGCCTTCCCCACCGTCACCCTGCTGCCGGTAGACGCCCTGCTGAGCCAG
CTGCGGAGCATCCTCGACCAGGTCACCCTGGCCGTGGAGTACGTGCTGGTGTTCGTTCTCGCGGCGGGCTTC
GTGGTGCTCTTCGCCGGTCTCCAGGCGACCCTCGACGAGCGCGTGCGCCAGGGTGCCCTGCTGCGCGCGCTG
GGTGCCGAGCGCGAGTTGCTGCAACGTACCCGGCGGGTCGAGTTCGCCCTGCTCGGCGCAGTCAGCGGCCTG
CTCGCGGCGCTCGGCTGCGAGGCGGTCAGCCTGCTGCTCTACCGACTGGTCTTCGACCTGCCGTGGCAAGCG
CACCCCTGGTTGCTCGCGCTGCCTCTGGTAGGCGCCGTGCTGGTAGGCGGCGCCGGCCTGCTGGGTACCCGT
CGCGCCCTCAACAGCAGCCCGCTGCGGGTCCTGCGCGAGGGCTGA
Translation:
MPLSRLLSLAGRQLFRESRSGELRVLFFALLIAVASSTAIGYFSARLNGAMLTRAAEFLGADLVLNGTQPAS
AEQIERGTRLGLRHADSVEFSSVIATDQGIQLSSIKAVGDRYPLRGQLKSAAAPFAAEQAGGRPQAGEVWVE
SRLLVSLDLKVGDSIEIGRKPLRIARILTYEPDRAGDFYSLTPRAMMSLADLDATGVVQPGSRVRYRDLWEG
PPEALQAYRQQVKGSLAANQRLQDARDGNRQVGDALGRAERYLNLASLAAVLLAGVAVALSAARFAARRYDA
SALLRCLGLSRSETLLLYALQLLLLGLLASAIGALLGWLAQLGLFRLLATLLPPDVPAGGLFPAFAGIATGL
VALAGFALPPLAALGRVPPLRVLRSDLLPVPMRTWMAYACALLALGLIMWRLSLDLKLTLALLGGGLVATLV
LGALLLLGLNGLRRALARASLSWRLGLGQLLRHPLAAAGQSLAFGLILLAMALIALLRGELLDTWQAQLPPD
APNHFALNILPTEKDAFERRVQKLSPGAEPLFPMVPGRLVAVNGKPVQALDEDVRSERALQRDLGLTWSERL
PSGNQLTAGRWWSAPQPGALPGVSVEEKLAANLRIQVGDRLTFSVAGQNREVQVQSLRKVKWDNFQPNFFMV
FQPGTLTDLPVTYLTSFYLPASQERDLIELARAFPTVTLLPVDALLSQLRSILDQVTLAVEYVLVFVLAAGF
VVLFAGLQATLDERVRQGALLRALGAERELLQRTRRVEFALLGAVSGLLAALGCEAVSLLLYRLVFDLPWQA
HPWLLALPLVGAVLVGGAGLLGTRRALNSSPLRVLREG*
AnnotationID:193GeneID:183
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:07
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, permease protein
Cell Localization:()
Synonyms:PA2858
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3127
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55780.1| (AE016863) permease, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 838

 Score = 1151 bits (2978), Expect = 0.0
 Identities = 582/835 (69%), Positives = 689/835 (82%), Gaps = 5/835 (0%)

>gb|AAN67929.1|AE016425_6 (AE016782) ABC transporter, permease protein, putative [Pseudomonas
           putida KT2440]
          Length = 832

 Score = 1138 bits (2943), Expect = 0.0
 Identities = 582/831 (70%), Positives = 677/831 (81%), Gaps = 2/831 (0%)








 
Structural Features:
COG3127, Predicted ABC-type transport system involved in lysophospholipase 
L1 biosynthesis, permease component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 829 residues,  99.8% aligned
Score =  804 bits (2077), Expect = 0.0
Identities = 377/829 (45%), Positives = 489/829 (58%), Gaps = 6/829 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17511




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36212




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:183_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:183
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
320
                           PA2858_tr
                           translation of PA2858
                           830
                           99.75
                           99.75
                           0
                           4100.0
     

     
     
20990
                           gb|AAG06246.1|AE004712_6
                           (AE004712) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           830
                           99.63
                           99.75
                           0
                           4097.0
     

     
     
20992
                           gb|AAN67929.1|AE016425_6
                           (AE016782) ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           832
                           69.83
                           81.37
                           2
                           2943.0
     

     
     
20991
                           gb|AAO55780.1|
                           (AE016863) permease, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           838
                           69.57
                           82.21
                           8
                           2983.0
     

     
     
20993
                           emb|CAE33912.1|
                           (BX640447) putative inner membrane transport permease [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           855
                           40.93
                           58.59
                           37
                           1532.0
     

     






      

          
GC ORFID: 43185How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2858Glimmer Score: 

          
Start: 2594524Stop: 2597016

          
Length: 2493


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2858 translation of PA2858Homolog Bit Score 1583.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene387 (ORF: BLASTX 1153.0), t_PA2858 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCCTCTCCCGCCTGCTGAGCCTCGCCGGTCGCCAATTGTTCCGCGAGTCGCGCAGCGGCGAGCTGCGC 
GTGCTGTTCTTCGCCCTGCTGATCGCGGTCGCCTCGAGCACCGCCATCGGCTATTTCAGCGCCCGCCTGAAC 
GGCGCCATGCTCACCCGCGCCGCCGAGTTCCTCGGCGCCGACCTGGTGCTCAACGGTACCCAGCCGGCAAGC 
GCCGAACAGATCGAACGCGGCACCCGTCTGGGCCTGCGCCACGCCGACAGCGTCGAGTTTTCCAGCGTGATC 
GCCACCGACCAGGGCATCCAGCTCAGCAGCATCAAGGCGGTCGGCGACCGCTACCCCCTGCGCGGGCAGCTC 
AAGAGCGCTGCCGCGCCGTTCGCCGCCGAGCAGGCCGGCGGTCGTCCGCAGGCGGGCGAGGTATGGGTCGAA 
TCGCGCCTGCTGGTCAGCCTCGACCTGAAGGTCGGCGACAGCATCGAGATCGGCCGCAAGCCGCTGCGCATC 
GCGCGCATCCTTACCTACGAGCCGGACCGCGCCGGCGACTTCTACAGCCTGACGCCCCGCGCCATGATGAGC 
CTGGCCGACCTCGATGCCACCGGGGTGGTCCAGCCGGGCAGCCGGGTGCGCTACCGCGATCTGTGGGAAGGC 
CCGCCGGAAGCCCTCCAGGCCTATCGCCAGCAGGTCAAGGGCAGCCTCGCCGCCAACCAGCGCCTGCAGGAT 
GCCCGCGACGGCAACCGCCAGGTGGGCGATGCCCTCGGCCGCGCCGAGCGCTACCTGAACCTGGCCAGCCTG 
GCCGCGGTGCTGCTCGCCGGCGTCGCCGTGGCGCTGTCCGCCGCCCGTTTCGCTGCACGGCGCTACGACGCC 
AGCGCACTGCTGCGCTGCCTCGGTCTGTCGCGCAGCGAAACCCTGCTCCTCTACGCGCTGCAACTGTTGCTG 
CTGGGCCTGCTCGCCAGCGCCATCGGCGCCCTGCTCGGCTGGTTGGCGCAGCTCGGCCTGTTCCGCCTGCTC 
GCCACGCTGCTGCCGCCGGACGTACCGGCCGGCGGCCTGTTCCCCGCCTTCGCCGGGATCGCCACCGGCCTG 
GTAGCGCTGGCCGGCTTCGCCCTGCCGCCGCTGGCAGCCCTGGGCCGGGTACCGCCGTTGCGGGTCCTGCGC 
AGCGACCTGCTGCCGGTGCCGATGCGCACCTGGATGGCCTACGCCTGCGCCCTGCTCGCCCTGGGCCTGATC 
ATGTGGCGGTTGAGTCTCGACCTGAAGCTGACCCTCGCCCTGCTCGGCGGCGGCCTGGTCGCCACGCTGGTG 
CTCGGCGCCCTCCTGCTGCTCGGCCTGAACGGCCTGCGCCGGGCACTGGCGCGTGCCAGCCTGTCATGGCGG 
CTGGGACTCGGCCAGTTGTTGCGGCACCCGCTGGCCGCCGCCGGACAGAGCCTGGCCTTCGGCCTGATCCTG 
CTGGCCATGGCCCTGATCGCCCTGCTTCGCGGCGAACTGCTGGATACCTGGCAGGCCCAGTTGCCGCCGGAC 
GCCCCCAACCATTTCGCCCTGAACATCCTGCCGACGGAAAAGGACGCCTTCGAACGTCGCGTGCAAAAGCTC 
TCCCCCGGCGCCGAGCCGCTGTTCCCCATGGTTCCCGGGCGCCTGGTAGCGGTGAACGGCAAGCCGGTCCAG 
GCGCTCGACGAAGACGTGCGCAGCGAGCGTGCCCTGCAGCGCGACCTCGGCCTGACCTGGTCGGAGCGACTG 
CCCTCCGGCAACCAGCTCACCGCCGGACGCTGGTGGAGCGCGCCGCAGCCGGGGGCCCTGCCGGGCGTGTCG 
GTGGAAGAGAAGCTGGCCGCCAACCTGCGTATCCAGGTCGGCGACCGGCTCACCTTCAGCGTCGCCGGGCAG 
AATCGCGAGGTCCAGGTCCAGAGCCTGCGCAAGGTGAAGTGGGACAATTTCCAGCCGAACTTCTTCATGGTC 
TTCCAGCCCGGCACCCTGACCGACCTGCCGGTGACCTACCTGACCAGCTTCTACCTGCCGGCCAGCCAGGAA 
CGCGACCTGATCGAACTGGCCCGCGCCTTCCCCACCGTCACCCTGCTGCCGGTAGACGCCCTGCTGAGCCAG 
CTGCGGAGCATCCTCGACCAGGTCACCCTGGCCGTGGAGTACGTGCTGGTGTTCGTTCTCGCGGCGGGCTTC 
GTGGTGCTCTTCGCCGGTCTCCAGGCGACCCTCGACGAGCGCGTGCGCCAGGGTGCCCTGCTGCGCGCGCTG 
GGTGCCGAGCGCGAGTTGCTGCAACGTACCCGGCGGGTCGAGTTCGCCCTGCTCGGCGCAGTCAGCGGCCTG 
CTCGCGGCGCTCGGCTGCGAGGCGGTCAGCCTGCTGCTCTACCGACTGGTCTTCGACCTGCCGTGGCAAGCG 
CACCCCTGGTTGCTCGCGCTGCCTCTGGTAGGCGCCGTGCTGGTAGGCGGCGCCGGCCTGCTGGGTACCCGT 
CGCGCCCTCAACAGCAGCCCGCTGCGGGTCCTGCGCGAGGGCTGA