ViewGene
Locus Name:
GeneID:
Location:

GeneID:1827
TrivialName: PA14_28040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28040
PAO1 Ortholog Locus:PA2789
Sequence Length:1080
Protein Length:359
Start: 2428012
Stop: 2426933
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06177.1|AE004706_7 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 351/359 (97%), Positives = 355/359 (98%)
Sequence:
GTGATCCCCGTCGCCCCTCTTCCCCTGATCGTCCCGCTTATCTACCTGTCGTCGTTCGTCGCCGGCATCTGG
CTGCTGGTCTGGCTATCGCTCCTGGCCTTCAGCCCGCGCGCGCGCCAGCGCTTGCGCCGCCGCTGGCCGAGC
CGCGGCCTGCTGATGCTGCTCCTGCTGATCCCGTTGGGACTGCGCGCCTGGCTGGAGATCGGTCTCTGGCAG
TACGAGCGCGAACGTGCACGCGAGGAAGCCGCGCACAGCGCCGTGCTCGAGCGCCCCACCCGCCTCGGAGGC
ATCGAGATGCCTGCCGGCACCCGGCTGAAGCTGGAACTCAAGCACCAGCCAGAAAGCTTCCGCGAAGCCGAA
TTCCCCACCCCGGTGACGATCCGCGGCGTCGCCACCCGCCACCTGCAACGCTGGCTGCAGAGCGAGCAGGAC
GACCCGCAGGACCCATGGAAAACCACCGGCGTCCATCCCACTTCGCTGCGCCTGCGTGGCGAGGGCGTCGCC
GAGATCGAAGGTTGGCGTTGCGACGCCAGCCAGGAAATCGCCTTCGCCAGCGAGCGCGACGGGCGTCCCGCC
GCCTTCGAAGGCTGTAGCCTGGCGACCGGCAACCGCGCCGACGAGATCGACTTCCCCGCCGGTGCGCGATTG
TTCGCCAGCGACGGCATGGTCTACACCGACGGCTACCGCGACGCCGAGCGCTGGCGGGTAATGCCGGAAACC
GGGCAACGGGTGTCGGTGCGCGGCATCGCGCTGAGCGGCGGCGCCCTGGCCTTCGACCGCGACCGCCGCCTG
TACGGCCTCGGCGGTACGGCCCTCGCCGAGGCCTTGCAACTGGGCGCCTGGCACTACCCGGCGGGCACCGAG
GTCAGCCTTTCGCCCCGCGCTGCCTGGCGTGCGCAACATCCGCACGCCTGGCTGTTCAGTCCTACCCGCGAA
GCCGCTTCGCATGCCTCCGGCGAGCGCCTGGAACACGGCGCCTCGCTGTTACAGACGCTGGACGGCGAGGAA
CTCGAGCGCCTCGACAACCACGCGGCAGGAGTCATCGACTTCATCGAACTGGAGATCGGCGACGACCGCTGA
Translation:
MIPVAPLPLIVPLIYLSSFVAGIWLLVWLSLLAFSPRARQRLRRRWPSRGLLMLLLLIPLGLRAWLEIGLWQ
YERERAREEAAHSAVLERPTRLGGIEMPAGTRLKLELKHQPESFREAEFPTPVTIRGVATRHLQRWLQSEQD
DPQDPWKTTGVHPTSLRLRGEGVAEIEGWRCDASQEIAFASERDGRPAAFEGCSLATGNRADEIDFPAGARL
FASDGMVYTDGYRDAERWRVMPETGQRVSVRGIALSGGALAFDRDRRLYGLGGTALAEALQLGAWHYPAGTE
VSLSPRAAWRAQHPHAWLFSPTREAASHASGERLEHGASLLQTLDGEELERLDNHAAGVIDFIELEIGDDR*
AnnotationID:1836GeneID:1827
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2789
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE35649.1| (BX640448) putative membrane protein [Bordetella bronchiseptica]
          Length = 383

 Score =  256 bits (653), Expect = 2e-67
 Identities = 147/358 (41%), Positives = 209/358 (58%), Gaps = 6/358 (1%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20804




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1827
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3208
                           PA2789_tr
                           translation of PA2789
                           359
                           97.77
                           98.88
                           0
                           1845.0
     

     
     
99551
                           gb|AAG06177.1|AE004706_7
                           (AE004706) hypothetical protein PA2789 [Pseudomonas aeruginosa PAO1]
                           359
                           97.49
                           98.88
                           0
                           1842.0
     

     
     
99552
                           emb|CAE35649.1|
                           (BX640448) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           387
                           37.98
                           54.00
                           32
                           657.0
     

     
     
99553
                           emb|CAE38509.1|
                           (BX640433) putative membrane protein [Bordetella parapertussis]
                           387
                           37.98
                           54.00
                           32
                           657.0
     

     






      

          
GC ORFID: 44829How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2789Glimmer Score: 

          
Start: 2525914Stop: 2526993

          
Length: 1080


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2789 translation of PA2789Homolog Bit Score 715.0

          
Other Homologs:  t_PA2789 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCCCCGTCGCCCCTCTTCCCCTGATCGTCCCGCTTATCTACCTGTCGTCGTTCGTCGCCGGCATCTGG 
CTGCTGGTCTGGCTATCGCTCCTGGCCTTCAGCCCGCGCGCGCGCCAGCGCTTGCGCCGCCGCTGGCCGAGC 
CGCGGCCTGCTGATGCTGCTCCTGCTGATCCCGTTGGGACTGCGCGCCTGGCTGGAGATCGGTCTCTGGCAG 
TACGAGCGCGAACGTGCACGCGAGGAAGCCGCGCACAGCGCCGTGCTCGAGCGCCCCACCCGCCTCGGAGGC 
ATCGAGATGCCTGCCGGCACCCGGCTGAAGCTGGAACTCAAGCACCAGCCAGAAAGCTTCCGCGAAGCCGAA 
TTCCCCACCCCGGTGACGATCCGCGGCGTCGCCACCCGCCACCTGCAACGCTGGCTGCAGAGCGAGCAGGAC 
GACCCGCAGGACCCATGGAAAACCACCGGCGTCCATCCCACTTCGCTGCGCCTGCGTGGCGAGGGCGTCGCC 
GAGATCGAAGGTTGGCGTTGCGACGCCAGCCAGGAAATCGCCTTCGCCAGCGAGCGCGACGGGCGTCCCGCC 
GCCTTCGAAGGCTGTAGCCTGGCGACCGGCAACCGCGCCGACGAGATCGACTTCCCCGCCGGTGCGCGATTG 
TTCGCCAGCGACGGCATGGTCTACACCGACGGCTACCGCGACGCCGAGCGCTGGCGGGTAATGCCGGAAACC 
GGGCAACGGGTGTCGGTGCGCGGCATCGCGCTGAGCGGCGGCGCCCTGGCCTTCGACCGCGACCGCCGCCTG 
TACGGCCTCGGCGGTACGGCCCTCGCCGAGGCCTTGCAACTGGGCGCCTGGCACTACCCGGCGGGCACCGAG 
GTCAGCCTTTCGCCCCGCGCTGCCTGGCGTGCGCAACATCCGCACGCCTGGCTGTTCAGTCCTACCCGCGAA 
GCCGCTTCGCATGCCTCCGGCGAGCGCCTGGAACACGGCGCCTCGCTGTTACAGACGCTGGACGGCGAGGAA 
CTCGAGCGCCTCGACAACCACGCGGCAGGAGTCATCGACTTCATCGAACTGGAGATCGGCGACGACCGCTGA