ViewGene
Locus Name:
GeneID:
Location:

GeneID:1826
TrivialName: PA14_29550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29550
PAO1 Ortholog Locus:PA2671
Sequence Length:1080
Protein Length:359
Start: 2561978
Stop: 2563057
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06059.1|AE004695_12 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 356/359 (99%), Positives = 357/359 (99%)
Sequence:
ATGATTTCTGATGGCGCATGCCGACATGCGGCGTCTGCCCGCTCGTCTGGCTTCGTTCTGGTCGGAGTGGTC
TGGTTCCTGGCCATCATGACCCTGCTGGCCAGTGCCGCTGTACTCTGGGTCGGGCGCTCGCTGGATGCCACG
GAAAACCGGCGCAAGGCGCTGCTTCGTGAGCTGGAGGAGCATGCCTTGCTGGCGCGGGTCCAATGGCTGGTG
GCTACCCAGCGCTATACCGTCGCGGGCCTGAGCGTACCGGGAAATGCTGGCGCCGCGCCGAGCAAGGTGGAC
ATGGACACTTCGATCCTGCCCATTGGCGGGGAGCTGCCTCTGGATGGCCGGGAGTTCTGCATGGCCAATGGC
TGGTGCATTGCGCTGCTCGATCGCTCCGCGCGCCTCAGTCTTTCCGGCATCGATCCGCGGGTACTGTCCAGG
CTGCTGGCGGGGTTGGGGGTTCCCGCCGAGCAGGTGCAGGTCATGGTCGCCCAATGGTTCAGCTATCTCTAT
CCCGGCGCCGCTCCACGACTGGGTAGCGCCGCGCAAGCCAGCGACAGGTCCTCTCCGGGCCAGGCCCGGCGC
CGTCCGTTGCGCTCGGTGATGGAAGTCTTCCGGCTGGAGGCCTGGCGCCCCTGGGAAGCGCATTTGCTCGAC
GCCGGTTGGCGCGATCTGGTTGCGGCGGACGAGGCGGCGCTGAACATCAACACCGCGGATGCCCGAATCCTG
TCTCTTGCCTGGGGATTACCGGAGGACGCTGTCGGCCGACTGCTGCAAGCCCGCTGGCAGCGTCCGTTCACC
CGGATGTCGGACCTGCATGACGTCCTCGGGGGTCATGCGAGGCTGGTTCCCGAGGATGGATGGGCGCGCCTG
GCCAGTCCGGTCCTGTCGATTCGGCTCTACCCGCCAGGAGCCGAGCAGGGGACGGAATACGAGGTCCGCTTC
AACTCAGAGCACCGCCTGCTGCCACCCTGGCAGCTTCTCTCGAAGAGGTCCGTGAAGATAAATGATCGCTAC
TCGAATCCTCCGCTGCATCCCGATATCGCCCCCGGGGTTCTTGCCGCCCCGCTTGTGGCAAGGCCGTGGTAA
Translation:
MISDGACRHAASARSSGFVLVGVVWFLAIMTLLASAAVLWVGRSLDATENRRKALLRELEEHALLARVQWLV
ATQRYTVAGLSVPGNAGAAPSKVDMDTSILPIGGELPLDGREFCMANGWCIALLDRSARLSLSGIDPRVLSR
LLAGLGVPAEQVQVMVAQWFSYLYPGAAPRLGSAAQASDRSSPGQARRRPLRSVMEVFRLEAWRPWEAHLLD
AGWRDLVAADEAALNINTADARILSLAWGLPEDAVGRLLQARWQRPFTRMSDLHDVLGGHARLVPEDGWARL
ASPVLSIRLYPPGAEQGTEYEVRFNSEHRLLPPWQLLSKRSVKINDRYSNPPLHPDIAPGVLAAPLVARPW*
AnnotationID:1835GeneID:1826
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2671
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3655




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20802




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36342




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1826_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1826
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3207
                           PA2671_tr
                           translation of PA2671
                           359
                           99.16
                           99.44
                           0
                           1846.0
     

     
     
99550
                           gb|AAG06059.1|AE004695_12
                           (AE004695) hypothetical protein PA2671 [Pseudomonas aeruginosa PAO1]
                           359
                           99.16
                           99.44
                           0
                           1846.0
     

     






      

          
GC ORFID: 44828How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2671Glimmer Score: 

          
Start: 2391948Stop: 2390869

          
Length: 1080


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2671 translation of PA2671Homolog Bit Score 715.0

          
Other Homologs:  t_PA2671 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTTCTGATGGCGCATGCCGACATGCGGCGTCTGCCCGCTCGTCTGGCTTCGTTCTGGTCGGAGTGGTC 
TGGTTCCTGGCCATCATGACCCTGCTGGCCAGTGCCGCTGTACTCTGGGTCGGGCGCTCGCTGGATGCCACG 
GAAAACCGGCGCAAGGCGCTGCTTCGTGAGCTGGAGGAGCATGCCTTGCTGGCGCGGGTCCAATGGCTGGTG 
GCTACCCAGCGCTATACCGTCGCGGGCCTGAGCGTACCGGGAAATGCTGGCGCCGCGCCGAGCAAGGTGGAC 
ATGGACACTTCGATCCTGCCCATTGGCGGGGAGCTGCCTCTGGATGGCCGGGAGTTCTGCATGGCCAATGGC 
TGGTGCATTGCGCTGCTCGATCGCTCCGCGCGCCTCAGTCTTTCCGGCATCGATCCGCGGGTACTGTCCAGG 
CTGCTGGCGGGGTTGGGGGTTCCCGCCGAGCAGGTGCAGGTCATGGTCGCCCAATGGTTCAGCTATCTCTAT 
CCCGGCGCCGCTCCACGACTGGGTAGCGCCGCGCAAGCCAGCGACAGGTCCTCTCCGGGCCAGGCCCGGCGC 
CGTCCGTTGCGCTCGGTGATGGAAGTCTTCCGGCTGGAGGCCTGGCGCCCCTGGGAAGCGCATTTGCTCGAC 
GCCGGTTGGCGCGATCTGGTTGCGGCGGACGAGGCGGCGCTGAACATCAACACCGCGGATGCCCGAATCCTG 
TCTCTTGCCTGGGGATTACCGGAGGACGCTGTCGGCCGACTGCTGCAAGCCCGCTGGCAGCGTCCGTTCACC 
CGGATGTCGGACCTGCATGACGTCCTCGGGGGTCATGCGAGGCTGGTTCCCGAGGATGGATGGGCGCGCCTG 
GCCAGTCCGGTCCTGTCGATTCGGCTCTACCCGCCAGGAGCCGAGCAGGGGACGGAATACGAGGTCCGCTTC 
AACTCAGAGCACCGCCTGCTGCCACCCTGGCAGCTTCTCTCGAAGAGGTCCGTGAAGATAAATGATCGCTAC 
TCGAATCCTCCGCTGCATCCCGATATCGCCCCCGGGGTTCTTGCCGCCCCGCTTGTGGCAAGGCCGTGGTAA