ViewGene

Locus Name:
GeneID:
Location:

GeneID:1824
TrivialName: PA14_43510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43510
PAO1 Ortholog Locus:PA1625
Sequence Length:1068
Protein Length:355
Start: 3875571
Stop: 3874504
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05014.1|AE004590_5 (AE004590) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 353/355 (99%), Positives = 354/355 (99%)
Sequence:
ATGTTCGATAACGATCGGCTGTTGCTTCGCGTGCTGTTGTTCGGCCTGCTCGGTGCCAGTCTCTGGGTGCTG
GCGCCATTCTGGTCGGCGCTGTTCTGGGCCGCGGTGCTGGCTTTCGCCAGTTGGCCGCTGATGCGTATGCTC
ACGCGCCTGCTCGGTGGCCGCGAGTCGCTGGCGGCGGGCCTGCTGACCCTGGGCTGGATCGTCCTGGTGGCG
TTGCCGCTGATCTGGCTCGGCTTCGGCCTGGCGGACAACGTTCGTTCGCTGATGGAGCTATTGAAGAATCTC
CAGGTCGAGGGCCTGCCGCCGCCGCCTTCGTGGATGGCCGGCGTTCCGCTGATCGGCGACCGCCTGATCGGC
TGGTGGAACTCCATCGACCAACAGGGCGTGGCGTTCTTCTACGTGCTCAAGCCCTATGTCGGCGAGGTCGGC
AACTGGCTGCTGGCGCGCAGCGCGAAGATCGGTGGAGGGATCCTGGAACTGGTCCTCAGTCTGATCCTGATC
TTCTTCTTCTACCGCGACGGGCCGCGCCTGGAGTCCATCGTCCACCGTGCCCTGGAACGCCTGATCGGCAAC
CGCGCGGAGCACTATCGCGACCTTGTCGCCGGCACCGTACAGCGGGTGGTCAACGGGGTGATCGGCACCGCC
GCGGCGCAAGCCCTGCTGGCCTGGATCGGCTTCACGATCGCCGGCGTACCGGGAGCCATGCTGCTCGGCCTG
CTGACCTTCGCCTGCAGCCTGCTGATGGTCCCGCCGCTGGTCTGGGGCCCGGCCACCGCCTGGCTGTTCTTC
AAGGGCGACTATGGCCACGGGGTGTTCCTCGGCCTGTGGGGCTTCTTCATCATCAGCGGGGTGGACAACATC
CTCAAACCCTACCTGATCAGCCGTGGCGGCAACCTGCCGCTGGTGGTGGTGCTGCTCGGGGTGTTCGGCGGC
CTGCTGGCGTTCGGCTTCATGGGCCTGTTCCTCGGCCCGATCCTGCTGGCAGTGGCCTACAACCTGCTCAGC
GACTGGATCGCCAGCACGCCGCGGACGCCGCCCGGCGAAGGGCGCGGCCCGGATGCCTGA
Translation:
MFDNDRLLLRVLLFGLLGASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVA
LPLIWLGFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWNSIDQQGVAFFYVLKPYVGEVG
NWLLARSAKIGGGILELVLSLILIFFFYRDGPRLESIVHRALERLIGNRAEHYRDLVAGTVQRVVNGVIGTA
AAQALLAWIGFTIAGVPGAMLLGLLTFACSLLMVPPLVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNI
LKPYLISRGGNLPLVVVLLGVFGGLLAFGFMGLFLGPILLAVAYNLLSDWIASTPRTPPGEGRGPDA*
AnnotationID:1833GeneID:1824
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 12:12:37
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA1625
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0628
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55737.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 349

 Score =  514 bits (1325), Expect = e-145
 Identities = 245/342 (71%), Positives = 294/342 (85%), Gaps = 1/342 (0%)

>gb|AAN69743.1|AE016611_1 (AE016789) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 350

 Score =  502 bits (1293), Expect = e-141
 Identities = 239/348 (68%), Positives = 289/348 (83%), Gaps = 1/348 (0%)

Structural Features:
COG0628, PerM, Predicted permease
CD-Length = 355 residues,  92.1% aligned
Score =  137 bits (346), Expect = 2e-33
Identities = 104/337 (30%), Positives = 157/337 (46%), Gaps = 13/337 (3%)
Genomic Context:
Comment:
ReferenceID:3651
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20798
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37249
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1824_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1824

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3205 PA1625_tr translation of PA1625 355 99.43 99.71 0 1845.0
99544 gb|AAG05014.1|AE004590_5 (AE004590) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 355 99.43 99.71 0 1845.0
99545 gb|AAO55737.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 360 68.61 82.22 16 1327.0
99546 gb|AAN69743.1|AE016611_1 (AE016789) membrane protein, putative [Pseudomonas putida KT2440] 356 67.13 81.46 7 1295.0
99547 gb|AAK64892.1| (AE007216) conserved hypothetical protein [Sinorhizobium meliloti] 373 40.75 57.64 18 748.0
GC ORFID: 44826How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1625Glimmer Score:
Start: 1078338Stop: 1079405
Length: 1068
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1625 translation of PA1625Homolog Bit Score 715.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1015 (ORF: BLASTX 506.0), t_PA1625 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGATAACGATCGGCTGTTGCTTCGCGTGCTGTTGTTCGGCCTGCTCGGTGCCAGTCTCTGGGTGCTG
GCGCCATTCTGGTCGGCGCTGTTCTGGGCCGCGGTGCTGGCTTTCGCCAGTTGGCCGCTGATGCGTATGCTC
ACGCGCCTGCTCGGTGGCCGCGAGTCGCTGGCGGCGGGCCTGCTGACCCTGGGCTGGATCGTCCTGGTGGCG
TTGCCGCTGATCTGGCTCGGCTTCGGCCTGGCGGACAACGTTCGTTCGCTGATGGAGCTATTGAAGAATCTC
CAGGTCGAGGGCCTGCCGCCGCCGCCTTCGTGGATGGCCGGCGTTCCGCTGATCGGCGACCGCCTGATCGGC
TGGTGGAACTCCATCGACCAACAGGGCGTGGCGTTCTTCTACGTGCTCAAGCCCTATGTCGGCGAGGTCGGC
AACTGGCTGCTGGCGCGCAGCGCGAAGATCGGTGGAGGGATCCTGGAACTGGTCCTCAGTCTGATCCTGATC
TTCTTCTTCTACCGCGACGGGCCGCGCCTGGAGTCCATCGTCCACCGTGCCCTGGAACGCCTGATCGGCAAC
CGCGCGGAGCACTATCGCGACCTTGTCGCCGGCACCGTACAGCGGGTGGTCAACGGGGTGATCGGCACCGCC
GCGGCGCAAGCCCTGCTGGCCTGGATCGGCTTCACGATCGCCGGCGTACCGGGAGCCATGCTGCTCGGCCTG
CTGACCTTCGCCTGCAGCCTGCTGATGGTCCCGCCGCTGGTCTGGGGCCCGGCCACCGCCTGGCTGTTCTTC
AAGGGCGACTATGGCCACGGGGTGTTCCTCGGCCTGTGGGGCTTCTTCATCATCAGCGGGGTGGACAACATC
CTCAAACCCTACCTGATCAGCCGTGGCGGCAACCTGCCGCTGGTGGTGGTGCTGCTCGGGGTGTTCGGCGGC
CTGCTGGCGTTCGGCTTCATGGGCCTGTTCCTCGGCCCGATCCTGCTGGCAGTGGCCTACAACCTGCTCAGC
GACTGGATCGCCAGCACGCCGCGGACGCCGCCCGGCGAAGGGCGCGGCCCGGATGCCTGA