ViewGene
Locus Name:
GeneID:
Location:

GeneID:1822
TrivialName: PA14_26470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26470
PAO1 Ortholog Locus:PA2908
Sequence Length:1101
Protein Length:366
Start: 2306595
Stop: 2305495
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06296.1|AE004717_2 (AE004717) cobalamin biosynthetic protein CbiD [Pseudomonas aeruginosa PAO1]
Identities = 363/366 (99%), Positives = 364/366 (99%)
Sequence:
ATGCGTGAGGAAACCCCCGAGCAGCCCGCGCCGTTGCGCAGCGGCTACACCACCGGCAGTTGCGCCACCGCC
ACCAGCCTGGCGGCGGCGCGCCTGCTGCTGGGTGGCACGATCAGCGACGCGGTGCAGATCGTCCTGCCCAAG
GGCCAGCAGGTGCTGATGCGCCTGGAATTCTGCCGCGCCTGGGAAAACGGCGCGGAAGCCGGCACCCTCAAG
GATGCCGGCGACGATCCCGACGTCACCCACGGCGCCCTGGTGTTCGCCCGGGTGCGCCTGGGCGCCGAGCCT
GGCGTGCGCTTCCATGCCGGCCCCGGGGTCGGTACGGTGACCCGCCCGGGGCTGACCCTGGCGGTCGGCGAG
CCGGCGATCAATCCGGTGCCGCGACAGATGATCGAACGCCACCTCGCCCAGCTCGCCGCCGAACGGGGCTAC
GCCGGCGGCTTCGAGGTCGCCATCGGCGTGGAGGGCGGCGCCGAGCTGGCGCTGAAGACCATGAACCCGCGC
CTGGGCATCCTCGGCGGGCTGTCGATCCTCGGCACCAGCGGCATCGTCCGGCCGTTCTCCTGCTCGGCCTAT
ATCGCCTCGATCCATCAGGGCATCGATGTCGCTCGCGCCAACGGCGTCCGCCACATCGCCGCCTGTACCGGC
AACGCCAGCGAGGACGCCATGCGCCGGCGCTATGGGCTGCCGGAGATCGCCCTGATCGAGATGGGCGACTTC
GCCGGCGCGGTGCTCAAGCACCTGCGCAAGGCACCGGTGGAAAAGCTCAGCCTGTGCGGCGGCTTCGGCAAG
ATCAGCAAGCTCGCCGGCGGCCACCTCGACCTGCACAGCCGCCATTCCAGCATCGACCTGCCGCAATTGGCC
GGCTGGGCCGCCGCGCTCGGTGCCAGCACCGCGCTACAGGACAGCATGCGCGCCGCCAACACCAGCCAGCAG
GCGCTGGCCCAGGCACACGCCGAAGGCGTGGCCCTGGGCGATGCGGTCTGCGCCCACGCCCTGCGCTTCGCC
CGCGGCATCGTGCCCACCGAGGTGGCGCTGGAAGTCTTCGCCATCGACCGCCAGGGCAACCTGGTCGGCCAG
GCCTGCGAGGAGCGCCGATGA
Translation:
MREETPEQPAPLRSGYTTGSCATATSLAAARLLLGGTISDAVQIVLPKGQQVLMRLEFCRAWENGAEAGTLK
DAGDDPDVTHGALVFARVRLGAEPGVRFHAGPGVGTVTRPGLTLAVGEPAINPVPRQMIERHLAQLAAERGY
AGGFEVAIGVEGGAELALKTMNPRLGILGGLSILGTSGIVRPFSCSAYIASIHQGIDVARANGVRHIAACTG
NASEDAMRRRYGLPEIALIEMGDFAGAVLKHLRKAPVEKLSLCGGFGKISKLAGGHLDLHSRHSSIDLPQLA
GWAAALGASTALQDSMRAANTSQQALAQAHAEGVALGDAVCAHALRFARGIVPTEVALEVFAIDRQGNLVGQ
ACEERR*
AnnotationID:1831GeneID:1822
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:52
Gene Name:cbiD
Confidence Code:2
GeneProduct:cobalamin biosynthetic protein CbiD
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01888
Secondary Functional Category(ies):
EC Number:2.1.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58308.1| (AE016873) cobalamin biosynthesis protein CbiD [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 370

 Score =  567 bits (1462), Expect = e-161
 Identities = 291/361 (80%), Positives = 309/361 (85%)

>gb|AAN70400.1|AE016682_2 (AE016792) cobalamin biosynthesis protein CbiD [Pseudomonas putida
           KT2440]
          Length = 364

 Score =  558 bits (1438), Expect = e-158
 Identities = 284/361 (78%), Positives = 307/361 (85%)








 
Structural Features:
pfam01888, CbiD, CbiD.
CD-Length = 292 residues, 100.0% aligned
Score =  211 bits (539), Expect = 9e-56
Identities = 122/295 (41%), Positives = 160/295 (54%), Gaps = 6/295 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20794




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36149




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1822_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1822
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3203
                           PA2908_tr
                           translation of PA2908
                           366
                           99.18
                           99.45
                           0
                           1848.0
     

     
     
99519
                           gb|AAG06296.1|AE004717_2
                           (AE004717) cobalamin biosynthetic protein CbiD [Pseudomonas aeruginosa PAO1]
                           366
                           99.18
                           99.45
                           0
                           1848.0
     

     
     
99520
                           gb|AAO58308.1|
                           (AE016873) cobalamin biosynthesis protein CbiD [Pseudomonas syringae pv. tomato str. DC3000]
                           370
                           78.91
                           84.05
                           4
                           1454.0
     

     
     
99521
                           gb|AAN70400.1|AE016682_2
                           (AE016792) cobalamin biosynthesis protein CbiD [Pseudomonas putida KT2440]
                           366
                           77.59
                           84.15
                           2
                           1435.0
     

     
     
99522
                           emb|CAB40740.1|
                           (AJ011317) Orf361 [Methylobacterium chloromethanicum]
                           376
                           48.13
                           62.50
                           25
                           827.0
     

     






      

          
GC ORFID: 44824How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2908Glimmer Score: 

          
Start: 2647330Stop: 2648430

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2908 translation of PA2908Homolog Bit Score 716.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5783 (ORF: BLASTX 565.0), t_PA2908 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGAGGAAACCCCCGAGCAGCCCGCGCCGTTGCGCAGCGGCTACACCACCGGCAGTTGCGCCACCGCC 
ACCAGCCTGGCGGCGGCGCGCCTGCTGCTGGGTGGCACGATCAGCGACGCGGTGCAGATCGTCCTGCCCAAG 
GGCCAGCAGGTGCTGATGCGCCTGGAATTCTGCCGCGCCTGGGAAAACGGCGCGGAAGCCGGCACCCTCAAG 
GATGCCGGCGACGATCCCGACGTCACCCACGGCGCCCTGGTGTTCGCCCGGGTGCGCCTGGGCGCCGAGCCT 
GGCGTGCGCTTCCATGCCGGCCCCGGGGTCGGTACGGTGACCCGCCCGGGGCTGACCCTGGCGGTCGGCGAG 
CCGGCGATCAATCCGGTGCCGCGACAGATGATCGAACGCCACCTCGCCCAGCTCGCCGCCGAACGGGGCTAC 
GCCGGCGGCTTCGAGGTCGCCATCGGCGTGGAGGGCGGCGCCGAGCTGGCGCTGAAGACCATGAACCCGCGC 
CTGGGCATCCTCGGCGGGCTGTCGATCCTCGGCACCAGCGGCATCGTCCGGCCGTTCTCCTGCTCGGCCTAT 
ATCGCCTCGATCCATCAGGGCATCGATGTCGCTCGCGCCAACGGCGTCCGCCACATCGCCGCCTGTACCGGC 
AACGCCAGCGAGGACGCCATGCGCCGGCGCTATGGGCTGCCGGAGATCGCCCTGATCGAGATGGGCGACTTC 
GCCGGCGCGGTGCTCAAGCACCTGCGCAAGGCACCGGTGGAAAAGCTCAGCCTGTGCGGCGGCTTCGGCAAG 
ATCAGCAAGCTCGCCGGCGGCCACCTCGACCTGCACAGCCGCCATTCCAGCATCGACCTGCCGCAATTGGCC 
GGCTGGGCCGCCGCGCTCGGTGCCAGCACCGCGCTACAGGACAGCATGCGCGCCGCCAACACCAGCCAGCAG 
GCGCTGGCCCAGGCACACGCCGAAGGCGTGGCCCTGGGCGATGCGGTCTGCGCCCACGCCCTGCGCTTCGCC 
CGCGGCATCGTGCCCACCGAGGTGGCGCTGGAAGTCTTCGCCATCGACCGCCAGGGCAACCTGGTCGGCCAG 
GCCTGCGAGGAGCGCCGATGA