ViewGene
Locus Name:
GeneID:
Location:

GeneID:1820
TrivialName: PA14_18600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18600
PAO1 Ortholog Locus:PA3538
Sequence Length:1083
Protein Length:360
Start: 1598179
Stop: 1597097
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06926.1|AE004774_4 (AE004774) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 360/360 (100%), Positives = 360/360 (100%)
Sequence:
ATGAGCCACGACCTGCTGCTGAACCTGAAAGATCTCGCCTGCGGCTACGCCTCGCAGAAAGTGGTGCAGGAC
CTCGACCTGCACCTCAATGCCGGAGACATCGGCTGCCTGCTGGGTCCTTCGGGATGCGGCAAGACCACCACC
CTGCGCGCCATCGCCGGCTTCGAGCCGGTGCTGGCCGGGCAGATCGAGCTGGGCGGCGAAGTCATCTCGCGT
CCCGGCTTCACCCTGGCGCCGGAGAAACGCCGGATCGGCATGGTGTTCCAGGACTACGCGCTGTTCCCGCAT
CTCAGCGTGGCCGACAATGTCGGCTTCGGCATCCGCAAGCATCCACAACGCGAGCGCCTGGTGCGCGAGCTT
CTGGAGCTGGTCAAGCTCGACCACCTCGCCGCGCGCCACCCCCACGAACTCTCCGGCGGCCAGCAACAACGG
GTGGCCCTGGCCCGCGCGCTGGCGCCCGAACCGCTGTTGCTGCTGCTCGACGAACCCTTCTCCAACCTCGAC
GTGGAACTGCGCCGCAGCCTCAGCCAGGAGGTTCGCGAGATCCTCAAGGCACGCGGCACCAGCGCGATCCTG
GTGACCCACGACCAGGAAGAAGCCTTCGCCGTCTGCGACCACATCGGCGTGTTCAAGGAAGGTCACCTGGAA
CAGTGGGACACCCCCTACAACCTCTACCACGAGCCGCTGACGCCCTTCGTCGCCAGCTTCGTCGGCCAGGGC
TACTTCATTCGCGGCCAGTTGCTCAGCCCCGATACGGTGCAGACCGAACTCGGCGTGATCCGCGGCAATCGC
GCCTACAGCCTGCCTTCCGGCAGCGCGGTAGACGTCCTGCTGCGCCCGGACGACCTGGTGCACGCGCCGCAG
GGCGAGCTGAAGGCGCGGATCGTCGGCAAGACCTTCCTCGGCGCCGCCACCCTGTACCGCCTGCAATTACCC
ACCGGTACCCAGCTGGAATCGATCTTCCCCAGCCATGCCGACCACCAGCCGGGCGATGACGTCGGTATCCGC
GTCGCCGCCGACCACCTGGTGGTGTTCGCCGCCCGGGGCAGCGTCGCCGCGCACCTCGCTCCCGTCCAGGCC
TGA
Translation:
MSHDLLLNLKDLACGYASQKVVQDLDLHLNAGDIGCLLGPSGCGKTTTLRAIAGFEPVLAGQIELGGEVISR
PGFTLAPEKRRIGMVFQDYALFPHLSVADNVGFGIRKHPQRERLVRELLELVKLDHLAARHPHELSGGQQQR
VALARALAPEPLLLLLDEPFSNLDVELRRSLSQEVREILKARGTSAILVTHDQEEAFAVCDHIGVFKEGHLE
QWDTPYNLYHEPLTPFVASFVGQGYFIRGQLLSPDTVQTELGVIRGNRAYSLPSGSAVDVLLRPDDLVHAPQ
GELKARIVGKTFLGAATLYRLQLPTGTQLESIFPSHADHQPGDDVGIRVAADHLVVFAARGSVAAHLAPVQA
*
AnnotationID:1829GeneID:1820
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 18:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA3538
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00267,COG3842,COG3839
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57621.1| (AE016871) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 353

 Score =  575 bits (1482), Expect = e-163
 Identities = 280/352 (79%), Positives = 321/352 (91%)

>emb|CAD84942.1| (BX321859) putative iron transport system ATP-binding protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 356

 Score =  365 bits (936), Expect = e-100
 Identities = 189/347 (54%), Positives = 237/347 (68%), Gaps = 7/347 (2%)

>emb|CAE33440.1| (BX640446) probable ATP-binding component of ABC transporter
           [Bordetella bronchiseptica]
          Length = 258

 Score =  292 bits (747), Expect = 2e-78
 Identities = 153/252 (60%), Positives = 182/252 (72%), Gaps = 6/252 (2%)








 
Structural Features:
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  190 bits (484), Expect = 2e-49
Identities = 87/221 (39%), Positives = 132/221 (59%), Gaps = 10/221 (4%)

COG3842, PotA, ABC-type spermidine/putrescine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues, 100.0% aligned
Score =  348 bits (893), Expect = 8e-97
Identities = 147/356 (41%), Positives = 204/356 (57%), Gaps = 14/356 (3%)

COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues,  98.8% aligned
Score =  281 bits (721), Expect = 7e-77
Identities = 126/345 (36%), Positives = 197/345 (57%), Gaps = 15/345 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3643




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20790




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32026




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1820_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1820
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3194
                           PA3538_tr
                           translation of PA3538
                           360
                           99.99
                           99.99
                           0
                           1850.0
     

     
     
99138
                           gb|AAG06926.1|AE004774_4
                           (AE004774) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           360
                           99.99
                           99.99
                           0
                           1850.0
     

     
     
99139
                           gb|AAO57621.1|
                           (AE016871) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           360
                           77.77
                           89.16
                           7
                           1480.0
     

     
     
99140
                           gb|AAN66703.1|AE016298_7
                           (AE016778) ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           370
                           74.05
                           83.24
                           11
                           1411.0
     

     
     
99141
                           emb|CAD84942.1|
                           (BX321859) putative iron transport system ATP-binding protein [Nitrosomonas europaea ATCC 19718]
                           367
                           52.31
                           65.39
                           18
                           936.0
     

     






      

          
GC ORFID: 44822How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3538Glimmer Score: 

          
Start: 3355755Stop: 3356837

          
Length: 1083


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3538 translation of PA3538Homolog Bit Score 717.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6124 (ORF: BLASTX 561.0), psyr_15may02_Scaffold7_revised_gene6993 (ORF: BLASTX 233.0), t_PA0603 (ORF: BLASTX 222.0), t_PA0326 (ORF: BLASTX 219.0), t_PA0206 (ORF: BLASTX 217.0), psyr_15may02_Scaffold16_revised_gene2680 (ORF: BLASTX 208.0), psyr_15may02_Scaffold7_revised_gene7035 (ORF: BLASTX 140.0), t_PA3538 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACGACCTGCTGCTGAACCTGAAAGATCTCGCCTGCGGCTACGCCTCGCAGAAAGTGGTGCAGGAC 
CTCGACCTGCACCTCAATGCCGGAGACATCGGCTGCCTGCTGGGTCCTTCGGGATGCGGCAAGACCACCACC 
CTGCGCGCCATCGCCGGCTTCGAGCCGGTGCTGGCCGGGCAGATCGAGCTGGGCGGCGAAGTCATCTCGCGT 
CCCGGCTTCACCCTGGCGCCGGAGAAACGCCGGATCGGCATGGTGTTCCAGGACTACGCGCTGTTCCCGCAT 
CTCAGCGTGGCCGACAATGTCGGCTTCGGCATCCGCAAGCATCCACAACGCGAGCGCCTGGTGCGCGAGCTT 
CTGGAGCTGGTCAAGCTCGACCACCTCGCCGCGCGCCACCCCCACGAACTCTCCGGCGGCCAGCAACAACGG 
GTGGCCCTGGCCCGCGCGCTGGCGCCCGAACCGCTGTTGCTGCTGCTCGACGAACCCTTCTCCAACCTCGAC 
GTGGAACTGCGCCGCAGCCTCAGCCAGGAGGTTCGCGAGATCCTCAAGGCACGCGGCACCAGCGCGATCCTG 
GTGACCCACGACCAGGAAGAAGCCTTCGCCGTCTGCGACCACATCGGCGTGTTCAAGGAAGGTCACCTGGAA 
CAGTGGGACACCCCCTACAACCTCTACCACGAGCCGCTGACGCCCTTCGTCGCCAGCTTCGTCGGCCAGGGC 
TACTTCATTCGCGGCCAGTTGCTCAGCCCCGATACGGTGCAGACCGAACTCGGCGTGATCCGCGGCAATCGC 
GCCTACAGCCTGCCTTCCGGCAGCGCGGTAGACGTCCTGCTGCGCCCGGACGACCTGGTGCACGCGCCGCAG 
GGCGAGCTGAAGGCGCGGATCGTCGGCAAGACCTTCCTCGGCGCCGCCACCCTGTACCGCCTGCAATTACCC 
ACCGGTACCCAGCTGGAATCGATCTTCCCCAGCCATGCCGACCACCAGCCGGGCGATGACGTCGGTATCCGC 
GTCGCCGCCGACCACCTGGTGGTGTTCGCCGCCCGGGGCAGCGTCGCCGCGCACCTCGCTCCCGTCCAGGCC 
TGA