ViewGene
Locus Name:
GeneID:
Location:

GeneID:182
TrivialName: PA14_61540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61540
PAO1 Ortholog Locus:PA4652
Sequence Length:2373
Protein Length:790
Start: 5489509
Stop: 5491881
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08039.1|AE004879_5 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 786/790 (99%), Positives = 787/790 (99%)
Sequence:
GTGCCTCGCCCGTGTCAGCGGCGCTCCCGCCACCACCGCTCGCTACTGATCGGCCTGGCGCTGCTCTCCCCT
GTCCATGCGGCGGACTACCTGGCCGGACTGCCGCCGCCGCAACCCGCTCCGTCCGGCGGCGGCAACGTCCTC
TACTACCTGGAACTGGTGATCAACGGCCGCGACAGCGGCCAGGTGGTGCCGGTCAACGCCGCCGATGGCCAT
TACCTGCTCGACGCCGCGGCCCTGCGCGAAGCCGGCGTGCGCCTGCCTGGCAACCCCGCCGGACAGGTCGCG
GTGGACGCCCTGCCCGAGGTCCGGGCGGACTATGACAGCGCCAGCCAGCAACTGCACCTGCAAGTGCCGCCG
GACTGGCTGCCGGAGCAGCGCTTCGACGATCCCGGACTGGTCGCCCGCGCCCCGGCGCGCAGCAGCCTCGGC
GCGCTGTTCAACTACGACCTGTACTACTCGGCCCCCGCCGACGGCGCCACACCCTGGCTTTCCGCGCTGCTC
GAGCAACGTCTGTTCGACGGCTTCGGGGTGATCTCCAACACCGGCGTCTACACCCGCTATTTCGGCGACGCC
GACAACCTCGACAGCCGCTACCTGCGCTATGACACCTACTGGCTGTACAACGACGAACGCAACATGCACAGC
TACCAACTGGGCGACTACGTCAACGGCGCGCTGAACTGGACCACCCCGGTACGCATGGGCGGCTTTCGCTTC
GCCCGCAACTTCGGCGTACGTCCGGACCTGGTCACCTATCCGCTGCTGCGCTTCGACGGCCAGGCCGCCGTA
CCCAGCACCGTCGACCTGTTCATCAACGGCTACAAGGCCAGCAGCGCCGACCTGCAGCCCGGTCCCTTCGCC
ATCAGCAACGTGCCGTATATCAACGGAGCCGGCGAAGCCACGGTGGTGACCACCGACGCCCAGGGCCGACAA
GTGGTGACCAGCCTGCCGTTCTACGTATCCAACACCCTGCTGGCGCGCGGCCTGAGCGATTTCGACCTGTCC
GTCGGGCGTCTGCGCGACGACTACGGCCTGCGCAACTTCTCCTATGCCGACAATGCCGCCAGCGGCATCTAC
CGCTACGGCGTCAGCGACCGCCTGACCCTCTCCACCCACGCCGAGGCCGCCAGCGACCTGCGCCTGCTCGGC
ATCGGCGGCGACATCGCCGTGGCCACCTTCGGCACCCTCAGCCTGGCGGCCAGCGGCAGCGACGGCCAGGGC
GACAGCGGCCAGCAATACCTGCTCGGCTACTCCTACTATTCGCGACGGCTCGGCCTCAGCCTGCAACACATC
GAGCGCAGCGCCGGTTATGGCGACCTCGGCACCCTGGACGGCGAGTACCAGTTGAGCCGGCGCACCGACCAG
GCTACCGCCAGCCTGACCTTCGACGAGCAGGGCACCATCGGTGCCGGCTACTTCGACATCCGCGCCCGCGAC
GGCAGCCGCACGCGCCTGGCCAACCTCTCTTACAGCCGCCCGATCGGCAGCCGTAGCAGCTTCTACCTGGCG
CTGAACAAGGATCTCGACGGCGACGGCTACAGCGCGCTGATGCAACTGGTGATTCCCTTCGACATCAACGGC
CTGCTGAACATCGGCGTCACCCGCGACAGCGACCGGCGCTACAGCGAGCGGGTGATCTGGAGCCGCTCCACG
CCGAGCCAGGGCGGTCTCGGCTGGAACCTCGGCTATGGCGGCGGCGCCAGCCGCTACCAGCAGGCCGACCTG
ACCTGGCGCATGCAGAACGTGCAACTGCAGGGCGGCCTCTATGGCGAGACCGGCAACTACACGCGCTGGGCC
GATCTCAGCGGCTCGCTGGTATGGATGGACAACGCCGTGTTCGCCAGCAACCGGATCAACGACGCCTTCGTC
CTGGTCAGCACCAAGGGTTATCCACAGGTGCCGATCCGCTACGAGAACCAACTGATGGGCAGCACCGACGAC
AACGGCCACCTGCTGGTGCCCTGGGTCGCGGCCTACTACCCGGCGAAGTTCCAGATCGAGCCGCTGGACCTT
CCGGCCAACGTCAGCGCGCCCGAAGTCGAGCAGCGCGTGGCGGTACGCCAGGGCAGCGGCCTGCTGCTGGAT
TTCCCGATCCGTGCCGTGGTCGCCGCCAGCATCAGCCTGGTGGACGAGCGCGGCGAACCGCTGCCGCTGGGT
AGCCGGGCCGAAGAAACCGGCAGCGGCCAGCGCGCCAGCGTCGGCTGGGACGGCCAGGTCTATTTCGAAGGA
TTGCAAAGCGACAACCAGCTACGCGTGGTCCGCCCCGACGGCCGGGCCTGCCAGGCACGCTTCCGCCTGGAC
ACGCGCAAACCCACCGTCAGCCAGGTCGGCCCGCTGACCTGCTCGGCCCCCATCGGAGATACGCCATGA
Translation:
MPRPCQRRSRHHRSLLIGLALLSPVHAADYLAGLPPPQPAPSGGGNVLYYLELVINGRDSGQVVPVNAADGH
YLLDAAALREAGVRLPGNPAGQVAVDALPEVRADYDSASQQLHLQVPPDWLPEQRFDDPGLVARAPARSSLG
ALFNYDLYYSAPADGATPWLSALLEQRLFDGFGVISNTGVYTRYFGDADNLDSRYLRYDTYWLYNDERNMHS
YQLGDYVNGALNWTTPVRMGGFRFARNFGVRPDLVTYPLLRFDGQAAVPSTVDLFINGYKASSADLQPGPFA
ISNVPYINGAGEATVVTTDAQGRQVVTSLPFYVSNTLLARGLSDFDLSVGRLRDDYGLRNFSYADNAASGIY
RYGVSDRLTLSTHAEAASDLRLLGIGGDIAVATFGTLSLAASGSDGQGDSGQQYLLGYSYYSRRLGLSLQHI
ERSAGYGDLGTLDGEYQLSRRTDQATASLTFDEQGTIGAGYFDIRARDGSRTRLANLSYSRPIGSRSSFYLA
LNKDLDGDGYSALMQLVIPFDINGLLNIGVTRDSDRRYSERVIWSRSTPSQGGLGWNLGYGGGASRYQQADL
TWRMQNVQLQGGLYGETGNYTRWADLSGSLVWMDNAVFASNRINDAFVLVSTKGYPQVPIRYENQLMGSTDD
NGHLLVPWVAAYYPAKFQIEPLDLPANVSAPEVEQRVAVRQGSGLLLDFPIRAVVAASISLVDERGEPLPLG
SRAEETGSGQRASVGWDGQVYFEGLQSDNQLRVVRPDGRACQARFRLDTRKPTVSQVGPLTCSAPIGDTP*
AnnotationID:192GeneID:182
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative type 1 pili usher protein CsuD
Cell Localization:()
Synonyms:csuD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3188
Secondary Functional Category(ies):chaperones & heat shock proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67975.1|AE016429_11 (AE016782) type 1 pili usher protein CsuD [Pseudomonas putida
           KT2440]
          Length = 797

 Score =  778 bits (2008), Expect = 0.0
 Identities = 394/771 (51%), Positives = 531/771 (68%), Gaps = 8/771 (1%)

>emb|CAC90516.1| (AJ414150) probable outer membrane usher protein [Yersinia pestis
           CO92]
          Length = 815

 Score =  634 bits (1636), Expect = 0.0
 Identities = 341/804 (42%), Positives = 484/804 (60%), Gaps = 38/804 (4%)








 
Structural Features:
COG3188, FimD, P pilus assembly protein, porin PapC 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 835 residues,  99.8% aligned
Score =  470 bits (1210), Expect = 3e-133
Identities = 220/850 (25%), Positives = 324/850 (38%), Gaps = 85/850 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17509




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37588




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:182_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:182
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
319
                           PA4652_tr
                           translation of PA4652
                           790
                           99.49
                           99.62
                           0
                           4105.0
     

     
     
20986
                           gb|AAG08039.1|AE004879_5
                           (AE004879) hypothetical protein PA4652 [Pseudomonas aeruginosa PAO1]
                           790
                           99.36
                           99.62
                           0
                           4102.0
     

     
     
20987
                           gb|AAN67975.1|AE016429_11
                           (AE016782) type 1 pili usher protein CsuD [Pseudomonas putida KT2440]
                           820
                           48.53
                           65.24
                           53
                           2013.0
     

     
     
20988
                           gb|AAM85425.1|AE013789_2
                           (AE013789) hypothetical [Yersinia pestis KIM]
                           838
                           41.64
                           58.71
                           71
                           1664.0
     

     
     
20989
                           emb|CAC90516.1|
                           (AJ414150) probable outer membrane usher protein [Yersinia pestis CO92]
                           838
                           41.64
                           58.71
                           71
                           1664.0
     

     






      

          
GC ORFID: 43184How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4652Glimmer Score: 

          
Start: 4753189Stop: 4755561

          
Length: 2373


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4652 translation of PA4652Homolog Bit Score 1585.0

          
Other Homologs:  t_PA4652 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTCGCCCGTGTCAGCGGCGCTCCCGCCACCACCGCTCGCTACTGATCGGCCTGGCGCTGCTCTCCCCT 
GTCCATGCGGCGGACTACCTGGCCGGACTGCCGCCGCCGCAACCCGCTCCGTCCGGCGGCGGCAACGTCCTC 
TACTACCTGGAACTGGTGATCAACGGCCGCGACAGCGGCCAGGTGGTGCCGGTCAACGCCGCCGATGGCCAT 
TACCTGCTCGACGCCGCGGCCCTGCGCGAAGCCGGCGTGCGCCTGCCTGGCAACCCCGCCGGACAGGTCGCG 
GTGGACGCCCTGCCCGAGGTCCGGGCGGACTATGACAGCGCCAGCCAGCAACTGCACCTGCAAGTGCCGCCG 
GACTGGCTGCCGGAGCAGCGCTTCGACGATCCCGGACTGGTCGCCCGCGCCCCGGCGCGCAGCAGCCTCGGC 
GCGCTGTTCAACTACGACCTGTACTACTCGGCCCCCGCCGACGGCGCCACACCCTGGCTTTCCGCGCTGCTC 
GAGCAACGTCTGTTCGACGGCTTCGGGGTGATCTCCAACACCGGCGTCTACACCCGCTATTTCGGCGACGCC 
GACAACCTCGACAGCCGCTACCTGCGCTATGACACCTACTGGCTGTACAACGACGAACGCAACATGCACAGC 
TACCAACTGGGCGACTACGTCAACGGCGCGCTGAACTGGACCACCCCGGTACGCATGGGCGGCTTTCGCTTC 
GCCCGCAACTTCGGCGTACGTCCGGACCTGGTCACCTATCCGCTGCTGCGCTTCGACGGCCAGGCCGCCGTA 
CCCAGCACCGTCGACCTGTTCATCAACGGCTACAAGGCCAGCAGCGCCGACCTGCAGCCCGGTCCCTTCGCC 
ATCAGCAACGTGCCGTATATCAACGGAGCCGGCGAAGCCACGGTGGTGACCACCGACGCCCAGGGCCGACAA 
GTGGTGACCAGCCTGCCGTTCTACGTATCCAACACCCTGCTGGCGCGCGGCCTGAGCGATTTCGACCTGTCC 
GTCGGGCGTCTGCGCGACGACTACGGCCTGCGCAACTTCTCCTATGCCGACAATGCCGCCAGCGGCATCTAC 
CGCTACGGCGTCAGCGACCGCCTGACCCTCTCCACCCACGCCGAGGCCGCCAGCGACCTGCGCCTGCTCGGC 
ATCGGCGGCGACATCGCCGTGGCCACCTTCGGCACCCTCAGCCTGGCGGCCAGCGGCAGCGACGGCCAGGGC 
GACAGCGGCCAGCAATACCTGCTCGGCTACTCCTACTATTCGCGACGGCTCGGCCTCAGCCTGCAACACATC 
GAGCGCAGCGCCGGTTATGGCGACCTCGGCACCCTGGACGGCGAGTACCAGTTGAGCCGGCGCACCGACCAG 
GCTACCGCCAGCCTGACCTTCGACGAGCAGGGCACCATCGGTGCCGGCTACTTCGACATCCGCGCCCGCGAC 
GGCAGCCGCACGCGCCTGGCCAACCTCTCTTACAGCCGCCCGATCGGCAGCCGTAGCAGCTTCTACCTGGCG 
CTGAACAAGGATCTCGACGGCGACGGCTACAGCGCGCTGATGCAACTGGTGATTCCCTTCGACATCAACGGC 
CTGCTGAACATCGGCGTCACCCGCGACAGCGACCGGCGCTACAGCGAGCGGGTGATCTGGAGCCGCTCCACG 
CCGAGCCAGGGCGGTCTCGGCTGGAACCTCGGCTATGGCGGCGGCGCCAGCCGCTACCAGCAGGCCGACCTG 
ACCTGGCGCATGCAGAACGTGCAACTGCAGGGCGGCCTCTATGGCGAGACCGGCAACTACACGCGCTGGGCC 
GATCTCAGCGGCTCGCTGGTATGGATGGACAACGCCGTGTTCGCCAGCAACCGGATCAACGACGCCTTCGTC 
CTGGTCAGCACCAAGGGTTATCCACAGGTGCCGATCCGCTACGAGAACCAACTGATGGGCAGCACCGACGAC 
AACGGCCACCTGCTGGTGCCCTGGGTCGCGGCCTACTACCCGGCGAAGTTCCAGATCGAGCCGCTGGACCTT 
CCGGCCAACGTCAGCGCGCCCGAAGTCGAGCAGCGCGTGGCGGTACGCCAGGGCAGCGGCCTGCTGCTGGAT 
TTCCCGATCCGTGCCGTGGTCGCCGCCAGCATCAGCCTGGTGGACGAGCGCGGCGAACCGCTGCCGCTGGGT 
AGCCGGGCCGAAGAAACCGGCAGCGGCCAGCGCGCCAGCGTCGGCTGGGACGGCCAGGTCTATTTCGAAGGA 
TTGCAAAGCGACAACCAGCTACGCGTGGTCCGCCCCGACGGCCGGGCCTGCCAGGCACGCTTCCGCCTGGAC 
ACGCGCAAACCCACCGTCAGCCAGGTCGGCCCGCTGACCTGCTCGGCCCCCATCGGAGATACGCCATGA