ViewGene
Locus Name:
GeneID:
Location:

GeneID:1819
TrivialName: PA14_53070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53070
PAO1 Ortholog Locus:PA0865
Sequence Length:1074
Protein Length:357
Start: 4705771
Stop: 4704698
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04254.1|AE004521_5 (AE004521) 4-hydroxyphenylpyruvate dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 356/357 (99%), Positives = 356/357 (99%)
Sequence:
ATGAACGCCGTGGCCAAGATCGAACAGCACAATCCCATCGGTACCGACGGATTCGAATTCGTCGAGTTCACC
GCCCCCGACGCCAAGGGCATCGAGCAGCTGCGCCAGCTGTTCAACATGATGGGCTTCACCGAAACCGCCAAG
CATCGTTCCAAGGAAGTCTTCCTGTTCCAGCAGAACGATATCAACATCGTGCTCAACGGCAGCCCGACCGGG
CATGTCCATGAATTCGCCCTCAAGCACGGCCCGAGCGCCTGCGCCATGGCCTTCCGGGTGAAGAACGCTTCC
CAGGCCGCCGCCTACGCCGAATCCCAGGGCGCCAAGCTGGTGGGCAGCCACGCCAACTTCGGCGAGCTGAAC
ATCCCTTCCCTGGAAGGCATCGGCGGTTCGCTGCTGTATCTTGTCGACCGCTACGGCGACCGCAGCATCTAT
GACGTCGACTTCGAGTTCATCGAAGGCCGCAGCGCCAACGACAACTCGGTCGGCCTGACCTACATCGACCAC
CTGACCCACAACGTCAAGCGCGGCCAGATGGACGTCTGGTCCGGCTTCTACGAGCGCATCGCCAACTTCCGC
GAGATTCGCTACTTCGACATCGAAGGCAAGCTCACCGGCCTGTTCTCCCGCGCCATGACCGCGCCTTGCGGG
AAGATCCGCATCCCGATCAACGAGTCGGCCGACGATACCTCGCAGATCGAGGAATTCATCCGCGAATACCAT
GGCGAAGGCATCCAGCACATCGCCCTGACCACCGACGACATCTATGCCACGGTGCGCAAGCTGCGCGCCAAC
GGCGTGAAGTTCATGTCGACCCCGGACACCTACTACGAGAAGGTCGACACCCGCGTCGCCGGGCATGGCGAG
CCGCTCGAGCAACTGCGCGAACTGAACCTGCTGATCGACGGCGCCCCGGGCGACGACGGCATCCTGCTGCAG
ATCTTCACCGACACGGTGATCGGCCCGATCTTCTTCGAGATCATCCAGCGCAAGGGCAACCAGGGTTTCGGC
GAGGGCAATTTCAAGGCCCTGTTCGAGTCCATCGAGGAAGATCAGATTCGCCGCGGCGTGATCTGA
Translation:
MNAVAKIEQHNPIGTDGFEFVEFTAPDAKGIEQLRQLFNMMGFTETAKHRSKEVFLFQQNDINIVLNGSPTG
HVHEFALKHGPSACAMAFRVKNASQAAAYAESQGAKLVGSHANFGELNIPSLEGIGGSLLYLVDRYGDRSIY
DVDFEFIEGRSANDNSVGLTYIDHLTHNVKRGQMDVWSGFYERIANFREIRYFDIEGKLTGLFSRAMTAPCG
KIRIPINESADDTSQIEEFIREYHGEGIQHIALTTDDIYATVRKLRANGVKFMSTPDTYYEKVDTRVAGHGE
PLEQLRELNLLIDGAPGDDGILLQIFTDTVIGPIFFEIIQRKGNQGFGEGNFKALFESIEEDQIRRGVI*
AnnotationID:1828GeneID:1819
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 10:10:51
Gene Name:hpd
Confidence Code:2
GeneProduct:4-hydroxyphenylpyruvate dioxygenase
Cell Localization:(1) Cytoplasmic
Synonyms:PA0865
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3185
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
[Amino acid transport and metabolism / General function prediction only]
         CD-Length = 363 residues,  97.5% aligned
         Score =  508 bits (1309), Expect = 1e-144






   
Genomic Context:






   
Comment:


















    ReferenceID:3641




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20788




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1819
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3193
                           PA0865_tr
                           translation of PA0865
                           357
                           99.71
                           99.71
                           0
                           1851.0
     

     
     
99106
                           gb|AAG04254.1|AE004521_5
                           (AE004521) 4-hydroxyphenylpyruvate dioxygenase [Pseudomonas aeruginosa PAO1]
                           357
                           99.71
                           99.71
                           0
                           1851.0
     

     
     
99107
                           gb|AAO11111.1|AE016806_101
                           (AE016806) 4-hydroxyphenylpyruvate dioxygenase [Vibrio vulnificus CMCP6]
                           362
                           67.40
                           78.17
                           10
                           1268.0
     

     
     
99108
                           dbj|BAC94259.1|
                           (AP005336) putitive hemolysin [Vibrio vulnificus YJ016]
                           362
                           67.40
                           78.17
                           10
                           1268.0
     

     
     
99109
                           dbj|BAC59612.1|
                           (AP005077) 4-hydroxyphenylpyruvate dioxygenase [Vibrio parahaemolyticus]
                           364
                           67.30
                           77.74
                           14
                           1265.0
     

     






      

          
GC ORFID: 44821How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0865Glimmer Score: 

          
Start: 248136Stop: 249209

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0865 translation of PA0865Homolog Bit Score 717.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8016 (ORF: BLASTX 376.0), t_PA0865 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCGTGGCCAAGATCGAACAGCACAATCCCATCGGTACCGACGGATTCGAATTCGTCGAGTTCACC 
GCCCCCGACGCCAAGGGCATCGAGCAGCTGCGCCAGCTGTTCAACATGATGGGCTTCACCGAAACCGCCAAG 
CATCGTTCCAAGGAAGTCTTCCTGTTCCAGCAGAACGATATCAACATCGTGCTCAACGGCAGCCCGACCGGG 
CATGTCCATGAATTCGCCCTCAAGCACGGCCCGAGCGCCTGCGCCATGGCCTTCCGGGTGAAGAACGCTTCC 
CAGGCCGCCGCCTACGCCGAATCCCAGGGCGCCAAGCTGGTGGGCAGCCACGCCAACTTCGGCGAGCTGAAC 
ATCCCTTCCCTGGAAGGCATCGGCGGTTCGCTGCTGTATCTTGTCGACCGCTACGGCGACCGCAGCATCTAT 
GACGTCGACTTCGAGTTCATCGAAGGCCGCAGCGCCAACGACAACTCGGTCGGCCTGACCTACATCGACCAC 
CTGACCCACAACGTCAAGCGCGGCCAGATGGACGTCTGGTCCGGCTTCTACGAGCGCATCGCCAACTTCCGC 
GAGATTCGCTACTTCGACATCGAAGGCAAGCTCACCGGCCTGTTCTCCCGCGCCATGACCGCGCCTTGCGGG 
AAGATCCGCATCCCGATCAACGAGTCGGCCGACGATACCTCGCAGATCGAGGAATTCATCCGCGAATACCAT 
GGCGAAGGCATCCAGCACATCGCCCTGACCACCGACGACATCTATGCCACGGTGCGCAAGCTGCGCGCCAAC 
GGCGTGAAGTTCATGTCGACCCCGGACACCTACTACGAGAAGGTCGACACCCGCGTCGCCGGGCATGGCGAG 
CCGCTCGAGCAACTGCGCGAACTGAACCTGCTGATCGACGGCGCCCCGGGCGACGACGGCATCCTGCTGCAG 
ATCTTCACCGACACGGTGATCGGCCCGATCTTCTTCGAGATCATCCAGCGCAAGGGCAACCAGGGTTTCGGC 
GAGGGCAATTTCAAGGCCCTGTTCGAGTCCATCGAGGAAGATCAGATTCGCCGCGGCGTGATCTGA