ViewGene

Locus Name:
GeneID:
Location:

GeneID:1818
TrivialName: PA14_64290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64290
PAO1 Ortholog Locus:PA4860
Sequence Length:1080
Protein Length:359
Start: 5730114
Stop: 5731193
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08245.1|AE004899_6 (AE004899) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 358/359 (99%), Positives = 358/359 (99%)
Sequence:
TTGAACCAGCCACTCACCGTCACCCTCGCCCGCCGGGCCGGCGGCCGCGTCACCGCTATCGCGCTCGGCGCA
GCCTTCGCCACGCTGCTGGCCATGCCGCTGCTGCACCTGCTGCCGGCGGACAGCGCGCTGCACCTCTCGGCC
TACAGCCTGACCCTGACCGGCAAGATCCTCTGCTACGCCATCGTCGCCCTCGCTCTCGACCTGGTCTGGGGC
TACGCCGGCCTGCTGTCCCTCGGCCACGGGCTGTTCTTCGCCCTCGGCGGCTACGCCATGGGCATGTACCTG
ATGCGCCAGGCCTCCGGCGACAGCCTGCCGGCGTTCATGACCTTCCTTTCCTGGAACGAATTGCCCTGGTAC
TGGGCCGGCACCCAGCACTTCCTCTGGGCGCTGTGCCTGGTGGTGCTGGTGCCCGGCGCGCTGGCCTTCGCC
TTCGGCTACTTCGCCTTCCGCTCGCGGATCCGCGGCGTGTACTTCTCGATCATGACCCAGGCCCTGACCTTC
GCCGGCATGCTGCTGTTCTTCCGCAACGAGACCGGTTTCGGCGGCAACAACGGCTTCACCGACTTCCGCAGC
ATTCTCGGCTTCCCGATCACCGCGCCGGGCACCCGCGCCGCCCTGTTCCTCGCCACCGTCGCGCTGCTCGCG
GCCAGCCTGCTGCTCGGCTGGCGCCTGGCGCGGAGCAAGTTCGGCCGGGTCCTCACCGCGCTGCGCGACGCC
GAGAACCGCCTGATGTTCTGCGGCTACGACCCGCGCGGCTACAAGCTCTTCGTCTGGACCCTGAGCGCGGTG
CTCTGCGGCCTCGCCGGCGCGCTGTTCGTGCCGCAGGTGGGGATCATCAACCCCAGCGAGATGTCGCCGACC
AACTCCATCGAAGCCGCCGTCTGGGTCGCCCTCGGCGGACGCGGCACCCTGCTCGGCCCGCTGCTCGGCGCC
GGCGTGGTGAACGGCGCGAAGAGCTGGTTCACCGTGGCCTTCCCGGAATACTGGCTGTTCTTCCTCGGCGCG
CTGTTCATCGTCGTCACCCTGTACCTGCCGCGCGGCCTGCTCGGCCTGCTGCGCAAGGAGAAGGAGCAATGA
Translation:
MNQPLTVTLARRAGGRVTAIALGAAFATLLAMPLLHLLPADSALHLSAYSLTLTGKILCYAIVALALDLVWG
YAGLLSLGHGLFFALGGYAMGMYLMRQASGDSLPAFMTFLSWNELPWYWAGTQHFLWALCLVVLVPGALAFA
FGYFAFRSRIRGVYFSIMTQALTFAGMLLFFRNETGFGGNNGFTDFRSILGFPITAPGTRAALFLATVALLA
ASLLLGWRLARSKFGRVLTALRDAENRLMFCGYDPRGYKLFVWTLSAVLCGLAGALFVPQVGIINPSEMSPT
NSIEAAVWVALGGRGTLLGPLLGAGVVNGAKSWFTVAFPEYWLFFLGALFIVVTLYLPRGLLGLLRKEKEQ*
AnnotationID:1827GeneID:1818
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 09:09:57
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA4860
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4177
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58316.1| (AE016873) branched-chain amino acid ABC transporter, permease
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 359

 Score =  610 bits (1572), Expect = e-174
 Identities = 298/360 (82%), Positives = 328/360 (91%), Gaps = 2/360 (0%)

>gb|AAN70412.1|AE016683_3 (AE016792) branched-chain amino acid ABC transporter, permease
           protein, putative [Pseudomonas putida KT2440]
          Length = 359

 Score =  603 bits (1556), Expect = e-172
 Identities = 296/359 (82%), Positives = 322/359 (89%), Gaps = 2/359 (0%)

>emb|CAC90030.1| (AJ414147) putative Branched-chain amino acid transport system,
           permease component [Yersinia pestis CO92]
          Length = 358

 Score =  580 bits (1496), Expect = e-165
 Identities = 278/360 (77%), Positives = 324/360 (90%), Gaps = 3/360 (0%)
Structural Features:
COG4177, LivM, ABC-type branched-chain amino acid transport system, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 314 residues,  99.4% aligned
Score =  192 bits (489), Expect = 6e-50
Identities = 124/340 (36%), Positives = 156/340 (45%), Gaps = 33/340 (9%)
Genomic Context:
Comment:
ReferenceID:14435
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20786
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35178
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1818_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1818

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3192 PA4860_tr translation of PA4860 359 99.72 99.72 0 1854.0
99083 gb|AAG08245.1|AE004899_6 (AE004899) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 359 99.44 99.72 0 1852.0
99084 gb|AAO58316.1| (AE016873) branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 360 82.50 91.11 2 1573.0
99085 gb|AAN70412.1|AE016683_3 (AE016792) branched-chain amino acid ABC transporter, permease protein, putative [Pseudomonas putida KT2440] 360 81.94 89.44 2 1556.0
99086 emb|CAC90030.1| (AJ414147) putative Branched-chain amino acid transport system, permease component [Yersinia pestis CO92] 360 76.94 90.00 3 1497.0
GC ORFID: 44820How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4860Glimmer Score:
Start: 4993794Stop: 4994873
Length: 1080
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4860 translation of PA4860Homolog Bit Score 718.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5799 (ORF: BLASTX 617.0), t_PA4860 (ORF: GLIMMER)
GC ORF Sequence
TTGAACCAGCCACTCACCGTCACCCTCGCCCGCCGGGCCGGCGGCCGCGTCACCGCTATCGCGCTCGGCGCA
GCCTTCGCCACGCTGCTGGCCATGCCGCTGCTGCACCTGCTGCCGGCGGACAGCGCGCTGCACCTCTCGGCC
TACAGCCTGACCCTGACCGGCAAGATCCTCTGCTACGCCATCGTCGCCCTCGCTCTCGACCTGGTCTGGGGC
TACGCCGGCCTGCTGTCCCTCGGCCACGGGCTGTTCTTCGCCCTCGGCGGCTACGCCATGGGCATGTACCTG
ATGCGCCAGGCCTCCGGCGACAGCCTGCCGGCGTTCATGACCTTCCTTTCCTGGAACGAATTGCCCTGGTAC
TGGGCCGGCACCCAGCACTTCCTCTGGGCGCTGTGCCTGGTGGTGCTGGTGCCCGGCGCGCTGGCCTTCGCC
TTCGGCTACTTCGCCTTCCGCTCGCGGATCCGCGGCGTGTACTTCTCGATCATGACCCAGGCCCTGACCTTC
GCCGGCATGCTGCTGTTCTTCCGCAACGAGACCGGTTTCGGCGGCAACAACGGCTTCACCGACTTCCGCAGC
ATTCTCGGCTTCCCGATCACCGCGCCGGGCACCCGCGCCGCCCTGTTCCTCGCCACCGTCGCGCTGCTCGCG
GCCAGCCTGCTGCTCGGCTGGCGCCTGGCGCGGAGCAAGTTCGGCCGGGTCCTCACCGCGCTGCGCGACGCC
GAGAACCGCCTGATGTTCTGCGGCTACGACCCGCGCGGCTACAAGCTCTTCGTCTGGACCCTGAGCGCGGTG
CTCTGCGGCCTCGCCGGCGCGCTGTTCGTGCCGCAGGTGGGGATCATCAACCCCAGCGAGATGTCGCCGACC
AACTCCATCGAAGCCGCCGTCTGGGTCGCCCTCGGCGGACGCGGCACCCTGCTCGGCCCGCTGCTCGGCGCC
GGCGTGGTGAACGGCGCGAAGAGCTGGTTCACCGTGGCCTTCCCGGAATACTGGCTGTTCTTCCTCGGCGCG
CTGTTCATCGTCGTCACCCTGTACCTGCCGCGCGGCCTGCTCGGCCTGCTGCGCAAGGAGAAGGAGCAATGA