ViewGene
Locus Name:
GeneID:
Location:

GeneID:1817
TrivialName: PA14_17550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17550
PAO1 Ortholog Locus:PA3615
Sequence Length:1071
Protein Length:356
Start: 1508004
Stop: 1506934
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07003.1|AE004782_1 (AE004782) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 356/356 (100%), Positives = 356/356 (100%)
Sequence:
ATGCCCTACGAAGCCGATGACTATCTTTCCCGGCACTTCCAGACCAGCGGCACCGACCTGGCGCGGAAGGTC
GACGAACTGGCGGCCCTTGCGGCTCCCGGCGACAGCCCCAATCTCGCGCTCTACCGCGAGATGCTCTTCACC
GTGACGCGCATGGCCCAGGCCGACCGCAACCGCTGGGACGCCAAGATCATGCTGCAGACCCTGCGCGAGATG
GAGCATGCCTTCAGCGTCCTCGAGCAGTTCAAGCGGCGACGCAAGGTCACCGTGTTCGGCTCGGCGCGCACG
CCGGTCGAACATCCGGTCTATGCCCTGGCGCGCAAGCTGGGCGAGGAACTGGCCCGCTACGATCTGATGGTG
ATCACCGGCGCCGGCGGCGGCATCATGGCCGCCGCCCACGAAGGCGCCGGGCTGGAGAACAGCCTGGGCTTC
AACATCACCCTGCCCTTCGAGCAGCACGCCAACCATACGGTGGACGGCAGCGGCAACCTGCTGTCGTTCCAC
TTCTTCTTCCTGCGTAAGCTGTTCTTCGTCAAGGAAGCCGACGCCCTGGTGCTCTGCCCCGGCGGCTTCGGC
ACCCTCGACGAGGCGCTGGAAGTGCTGACCCTGGTGCAGACCGGCAAGAGCCCGCTGGTGCCGATCGTGCTG
CTCGACCAGCCGGGCGGCCGCTACTGGGAACACGCCCTGGAGTTCATGCAGGAACAGTTGCTGGAGAACCAC
TATATCCTGCCGGCCGACATGCGCCTGATGCGCCTGGTGCATTCGGCCGAAGACGCGGTGAAGGAAATCGCC
CAGTTCTACCGCAACTTCCACTCCAGCCGCTGGCTGAAAGGCACGTTCGTGATTCGCCTGAACCACGCCCTG
AACGAAGCCGCGCTGGCGCACCTGCACGAACACTTCGCCAGCCTCTGCCTGAGCGGCGGCTTCCAGCAGCAG
GCCTACAGCGAGCAGGAACAGGACGAACCGGAGTTCCGCAACCTGACCCGCCTCGCCTTCGTGTTCAACGGG
CGCGACCAGGGGCGTCTGCGGGAATTGCTGGACTACATCAACCTGCCGGAAAACTGGGACTGA
Translation:
MPYEADDYLSRHFQTSGTDLARKVDELAALAAPGDSPNLALYREMLFTVTRMAQADRNRWDAKIMLQTLREM
EHAFSVLEQFKRRRKVTVFGSARTPVEHPVYALARKLGEELARYDLMVITGAGGGIMAAAHEGAGLENSLGF
NITLPFEQHANHTVDGSGNLLSFHFFFLRKLFFVKEADALVLCPGGFGTLDEALEVLTLVQTGKSPLVPIVL
LDQPGGRYWEHALEFMQEQLLENHYILPADMRLMRLVHSAEDAVKEIAQFYRNFHSSRWLKGTFVIRLNHAL
NEAALAHLHEHFASLCLSGGFQQQAYSEQEQDEPEFRNLTRLAFVFNGRDQGRLRELLDYINLPENWD*
AnnotationID:1826GeneID:1817
AnnotatorUID: diggins
Modification Date/Time: 2005-07-01 20:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative lysine decarboxylase
Cell Localization:()
Synonyms:PA3615
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1611,pfam03641
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57488.1| (AE016870) decarboxylase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 373

 Score =  511 bits (1317), Expect = e-144
 Identities = 250/355 (70%), Positives = 297/355 (83%), Gaps = 1/355 (0%)







 
Structural Features:
COG1611, Predicted Rossmann fold nucleotide-binding protein 
CD-Length = 205 residues,  96.6% aligned
Score =  182 bits (462), Expect = 1e-46
Identities = 75/201 (37%), Positives = 100/201 (49%), Gaps = 5/201 (2%)

pfam03641, Lysine_decarbox, Possible lysine decarboxylase.
CD-Length = 136 residues,  99.3% aligned
Score =  124 bits (313), Expect = 3e-29
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 10/143 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20784




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31926




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1817_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1817
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3191
                           PA3615_tr
                           translation of PA3615
                           356
                           99.99
                           99.99
                           0
                           1854.0
     

     
     
99060
                           gb|AAG07003.1|AE004782_1
                           (AE004782) hypothetical protein PA3615 [Pseudomonas aeruginosa PAO1]
                           356
                           99.99
                           99.99
                           0
                           1854.0
     

     
     
99061
                           gb|AAO57488.1|
                           (AE016870) decarboxylase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           374
                           66.84
                           79.41
                           19
                           1317.0
     

     
     
99062
                           gb|AAN67252.1|AE016352_5
                           (AE016780) conserved hypothetical protein TIGR00730 [Pseudomonas putida KT2440]
                           374
                           63.63
                           77.00
                           20
                           1244.0
     

     
     
99063
                           emb|CAD78743.1|
                           (BX294151) conserved hypothetical protein [Pirellula sp.] [Pirellula sp. 1]
                           389
                           38.56
                           55.78
                           47
                           717.0
     

     






      

          
GC ORFID: 44819How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3615Glimmer Score: 

          
Start: 3445933Stop: 3447003

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3615 translation of PA3615Homolog Bit Score 718.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4776 (ORF: BLASTX 516.0), t_PA3615 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTACGAAGCCGATGACTATCTTTCCCGGCACTTCCAGACCAGCGGCACCGACCTGGCGCGGAAGGTC 
GACGAACTGGCGGCCCTTGCGGCTCCCGGCGACAGCCCCAATCTCGCGCTCTACCGCGAGATGCTCTTCACC 
GTGACGCGCATGGCCCAGGCCGACCGCAACCGCTGGGACGCCAAGATCATGCTGCAGACCCTGCGCGAGATG 
GAGCATGCCTTCAGCGTCCTCGAGCAGTTCAAGCGGCGACGCAAGGTCACCGTGTTCGGCTCGGCGCGCACG 
CCGGTCGAACATCCGGTCTATGCCCTGGCGCGCAAGCTGGGCGAGGAACTGGCCCGCTACGATCTGATGGTG 
ATCACCGGCGCCGGCGGCGGCATCATGGCCGCCGCCCACGAAGGCGCCGGGCTGGAGAACAGCCTGGGCTTC 
AACATCACCCTGCCCTTCGAGCAGCACGCCAACCATACGGTGGACGGCAGCGGCAACCTGCTGTCGTTCCAC 
TTCTTCTTCCTGCGTAAGCTGTTCTTCGTCAAGGAAGCCGACGCCCTGGTGCTCTGCCCCGGCGGCTTCGGC 
ACCCTCGACGAGGCGCTGGAAGTGCTGACCCTGGTGCAGACCGGCAAGAGCCCGCTGGTGCCGATCGTGCTG 
CTCGACCAGCCGGGCGGCCGCTACTGGGAACACGCCCTGGAGTTCATGCAGGAACAGTTGCTGGAGAACCAC 
TATATCCTGCCGGCCGACATGCGCCTGATGCGCCTGGTGCATTCGGCCGAAGACGCGGTGAAGGAAATCGCC 
CAGTTCTACCGCAACTTCCACTCCAGCCGCTGGCTGAAAGGCACGTTCGTGATTCGCCTGAACCACGCCCTG 
AACGAAGCCGCGCTGGCGCACCTGCACGAACACTTCGCCAGCCTCTGCCTGAGCGGCGGCTTCCAGCAGCAG 
GCCTACAGCGAGCAGGAACAGGACGAACCGGAGTTCCGCAACCTGACCCGCCTCGCCTTCGTGTTCAACGGG 
CGCGACCAGGGGCGTCTGCGGGAATTGCTGGACTACATCAACCTGCCGGAAAACTGGGACTGA