ViewGene
Locus Name:
GeneID:
Location:

GeneID:1816
TrivialName: PA14_35240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35240
PAO1 Ortholog Locus:PA2268
Sequence Length:1071
Protein Length:356
Start: 3134849
Stop: 3133779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05656.1|AE004652_9 (AE004652) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/356 (98%), Positives = 354/356 (99%)
Sequence:
ATGTCCACCCCTCCCGCGGCGCCGCTGCGCATTGCCTTGGTCGGCGACCACGACCCGCACATCACCGCCCAC
CGGGCGATTCCCCTGGCCCTGCGCCTGGCCGGCGAGGCACTCGGCCTGGAGATCGCATTCGACTGGCTGGCC
AGCGACCGCCTGCCCGCCGAGCCGGCGCTGGAGCGCTATGACGGGTTCTGGTGCGTGCCGGGCAGCCCCTAT
CGCGACGCCGACGCGGTGCTGCGCCTGATCGCCCATGCCCGGGGCCGGCGCCGGCCGTTCCTCGGTACCTGC
GCCGGCTTCCAGCACACGATCCTCGAGTTCGCCCGCAACGCCCTCGGCTGGCAGGCGGCGACCCATGGCGAG
GAGCATCCGCACAGCGACCAGGCGGTGATCGCCGCCCTGCCCTGCGCTCTGCTCGAAGCCCGCGAGGAAGTC
CGCCTGCTGCGCGGCTCGCGCCTGGCCCTGGCGTATGCTGCCGACTGGATCGAGGCGGACTACCACTGCCGC
TACGCAATCGCCCCGCGCTTCGCCGCGGAACTTACCGGCGGCGCACTGCGGGCCAGCGCCTGGAGCGCCGAC
GGAGCGATCCGCGCGGTGGAGCTGGAACAGCATCCGTTCTTCGTCGCCACCCTGTTCCAACCCGAGCGGGCA
GCCCTGGCCGGCGTCCTGCCGCCACTGCCGAAGGCATTCGTCGAGGCGTGCCGGACGCAGCGCCGCGACCGC
CCCCGGCGCGGCCCGACACCTTATTACGCAGTGATCTTCAGCTCCCATCGCAGCGCCGTCGACGACGGCTAC
GCCGAAGCGGCCGAGCGCATGCTGGAACTGGCCAGCCGCCAGCCGGGCTATCTCGGCGTGGAGTCGGTCCGC
GGCGCCGACGGTTTCGGCATCACCGTCTCCTACTGGGACAGCGAGGCGGCGATCCGTGCCTGGAGCCGCCAC
GCGGAGCACCGCGACGCCCAGGCGCGCGGCCGGCGCGACTGGTACGCCGGTTTCAGCGCGCGGATCGCCCGG
GTCGAACGCGAATACGCCTTCCCGGCTCAGCCGGACACCGCGCAGTCTCCGGCCTCGTCCTGA
Translation:
MSTPPAAPLRIALVGDHDPHITAHRAIPLALRLAGEALGLEIAFDWLASDRLPAEPALERYDGFWCVPGSPY
RDADAVLRLIAHARGRRRPFLGTCAGFQHTILEFARNALGWQAATHGEEHPHSDQAVIAALPCALLEAREEV
RLLRGSRLALAYAADWIEADYHCRYAIAPRFAAELTGGALRASAWSADGAIRAVELEQHPFFVATLFQPERA
ALAGVLPPLPKAFVEACRTQRRDRPRRGPTPYYAVIFSSHRSAVDDGYAEAAERMLELASRQPGYLGVESVR
GADGFGITVSYWDSEAAIRAWSRHAEHRDAQARGRRDWYAGFSARIARVEREYAFPAQPDTAQSPASS*
AnnotationID:1825GeneID:1816
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2268
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20782




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32511




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1816_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1816
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3190
                           PA2268_tr
                           translation of PA2268
                           356
                           98.87
                           99.43
                           0
                           1854.0
     

     
     
99052
                           gb|AAG05656.1|AE004652_9
                           (AE004652) hypothetical protein PA2268 [Pseudomonas aeruginosa PAO1]
                           356
                           98.87
                           99.43
                           0
                           1854.0
     

     
     
99053
                           gb|AAO56934.1|
                           (AE016868) CTP synthase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           359
                           30.08
                           40.38
                           118
                           537.0
     

     
     
99057
                           emb|CAD13810.1|
                           (AL646058) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           362
                           17.67
                           20.99
                           241
                           277.0
     

     
     
99055
                           emb|CAB14300.1|
                           (Z99116) yqjZ [Bacillus subtilis subsp. subtilis str. 168]
                           357
                           17.36
                           21.56
                           244
                           297.0
     

     






      

          
GC ORFID: 44818How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2268Glimmer Score: 

          
Start: 1819067Stop: 1820137

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2268 translation of PA2268Homolog Bit Score 718.0

          
Other Homologs:  t_PA2268 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACCCCTCCCGCGGCGCCGCTGCGCATTGCCTTGGTCGGCGACCACGACCCGCACATCACCGCCCAC 
CGGGCGATTCCCCTGGCCCTGCGCCTGGCCGGCGAGGCACTCGGCCTGGAGATCGCATTCGACTGGCTGGCC 
AGCGACCGCCTGCCCGCCGAGCCGGCGCTGGAGCGCTATGACGGGTTCTGGTGCGTGCCGGGCAGCCCCTAT 
CGCGACGCCGACGCGGTGCTGCGCCTGATCGCCCATGCCCGGGGCCGGCGCCGGCCGTTCCTCGGTACCTGC 
GCCGGCTTCCAGCACACGATCCTCGAGTTCGCCCGCAACGCCCTCGGCTGGCAGGCGGCGACCCATGGCGAG 
GAGCATCCGCACAGCGACCAGGCGGTGATCGCCGCCCTGCCCTGCGCTCTGCTCGAAGCCCGCGAGGAAGTC 
CGCCTGCTGCGCGGCTCGCGCCTGGCCCTGGCGTATGCTGCCGACTGGATCGAGGCGGACTACCACTGCCGC 
TACGCAATCGCCCCGCGCTTCGCCGCGGAACTTACCGGCGGCGCACTGCGGGCCAGCGCCTGGAGCGCCGAC 
GGAGCGATCCGCGCGGTGGAGCTGGAACAGCATCCGTTCTTCGTCGCCACCCTGTTCCAACCCGAGCGGGCA 
GCCCTGGCCGGCGTCCTGCCGCCACTGCCGAAGGCATTCGTCGAGGCGTGCCGGACGCAGCGCCGCGACCGC 
CCCCGGCGCGGCCCGACACCTTATTACGCAGTGATCTTCAGCTCCCATCGCAGCGCCGTCGACGACGGCTAC 
GCCGAAGCGGCCGAGCGCATGCTGGAACTGGCCAGCCGCCAGCCGGGCTATCTCGGCGTGGAGTCGGTCCGC 
GGCGCCGACGGTTTCGGCATCACCGTCTCCTACTGGGACAGCGAGGCGGCGATCCGTGCCTGGAGCCGCCAC 
GCGGAGCACCGCGACGCCCAGGCGCGCGGCCGGCGCGACTGGTACGCCGGTTTCAGCGCGCGGATCGCCCGG 
GTCGAACGCGAATACGCCTTCCCGGCTCAGCCGGACACCGCGCAGTCTCCGGCCTCGTCCTGA