ViewGene
Locus Name:
GeneID:
Location:

GeneID:1815
TrivialName: PA14_36550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36550
PAO1 Ortholog Locus:PA2167
Sequence Length:1098
Protein Length:365
Start: 3252445
Stop: 3251348
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05555.1|AE004644_2 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 358/365 (98%), Positives = 361/365 (98%)
Sequence:
ATGAGCGCAGACCCTCGGCAGAGACTGGTGGTGGCCCATAGCGTCGATCCCGCGGCCGCCGAACATGAAGTG
CAGGGCAACCTGGCCCTGGCGCGCTGGCTGGCGGAAGTCCAGAAGCTGGAGTTCGGCGGCCGCTACGAACCC
GAATTGCACCAGCGAGGCCCCCTCTACCTGGTCCCGACCCGCACCCTGGTCGGCAGGGAGACCGCCGTGCGC
CTGGGCGTGAACAGTGACGAAGATCTGCTCGGCGGTTTCGTCGAGCACGCGTTCATCGCCGGCAAGGCCATC
GTCCATCCGCTGCCGCGCGGCGGCGTGGCGCCGGAAGGCTGGAACCCGCTGTTCGCGGAGAAGGTCCGCGAC
GTCGTGCTCAACGGCGTCAGCGTCTTCAGCCTGGCCGACGCACACCGCGCCGGCGCCCGCCTGCTCGCCGAA
GGACCGGTGCGGGCCAAGCTGGCGGAGGCCTGTGGCGGCCTCGGCCAGTACGTGGCGCACGACCTCGACGAA
CTGGACGGCTGGCTCGGCGGGCTGGAGGAGCGCCAGTTGGCGCAGGGCCTGGTACTGGAAGCCAACCTGGAC
GGGGTCGTTACCCATAGCGTCGGCCAGCTCCGGGTCAACGGCTTcctGCTGAGCTACCACGGTCAGCAGCAC
CAGACCCGCAACGCGCGCGGCGAACTGGTCTACGCCGGCTCCGACTTGCTGGTGGCGCGCGGTGGCTATGCC
GAGCTGCTGACCCTGGACCTGGCCCGCGAGGTGCGCCAGGCCATCGAGTACGCGCGGATCTTCGACACCGCC
GCGGCGATCTTCTTCCCCGGCTGCTTCGCCTCGCGGCGCAACTACGACATTGCCCAGGGCCGGGACGGCAAC
GGTCGGGAGCGCTTCGGCGTGCTCGAGCAGTCCTGGCGGGTCGGCGGCGCGAGCAGCGCCGAGATCGCCGCG
CTGGAGGCCTTCCGCGCCGACCCGGGACTGCCCGCGGTGCGCGCCGCGTCGTTCGAGATCCACGAAGACAAG
CGCCTGCCGGACAACAGCCGGGTGATCTATCGCGGCCCCGACGAACACGGCGACTTCCTGCTCAAATATGCG
ATGACGGGGGAGGCATGA
Translation:
MSADPRQRLVVAHSVDPAAAEHEVQGNLALARWLAEVQKLEFGGRYEPELHQRGPLYLVPTRTLVGRETAVR
LGVNSDEDLLGGFVEHAFIAGKAIVHPLPRGGVAPEGWNPLFAEKVRDVVLNGVSVFSLADAHRAGARLLAE
GPVRAKLAEACGGLGQYVAHDLDELDGWLGGLEERQLAQGLVLEANLDGVVTHSVGQLRVNGFLLSYHGQQH
QTRNARGELVYAGSDLLVARGGYAELLTLDLAREVRQAIEYARIFDTAAAIFFPGCFASRRNYDIAQGRDGN
GRERFGVLEQSWRVGGASSAEIAALEAFRADPGLPAVRAASFEIHEDKRLPDNSRVIYRGPDEHGDFLLKYA
MTGEA*
AnnotationID:1824GeneID:1815
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2167
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20780




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1815
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3189
                           PA2167_tr
                           translation of PA2167
                           365
                           98.08
                           98.90
                           0
                           1853.0
     

     
     
99047
                           gb|AAG05555.1|AE004644_2
                           (AE004644) hypothetical protein PA2167 [Pseudomonas aeruginosa PAO1]
                           365
                           98.08
                           98.90
                           0
                           1853.0
     

     
     
99048
                           gb|AAN67850.1|AE016416_3
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           379
                           42.21
                           55.40
                           21
                           667.0
     

     
     
99049
                           emb|CAE33329.1|
                           (BX640445) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           387
                           39.79
                           51.93
                           28
                           581.0
     

     
     
99050
                           emb|CAE37964.1|
                           (BX640431) conserved hypothetical protein [Bordetella parapertussis]
                           387
                           39.79
                           51.93
                           28
                           581.0
     

     






      

          
GC ORFID: 44817How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2167Glimmer Score: 

          
Start: 1701470Stop: 1702567

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2167 translation of PA2167Homolog Bit Score 718.0

          
Other Homologs:  t_PA2167 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCAGACCCTCGGCAGAGACTGGTGGTGGCCCATAGCGTCGATCCCGCGGCCGCCGAACATGAAGTG 
CAGGGCAACCTGGCCCTGGCGCGCTGGCTGGCGGAAGTCCAGAAGCTGGAGTTCGGCGGCCGCTACGAACCC 
GAATTGCACCAGCGAGGCCCCCTCTACCTGGTCCCGACCCGCACCCTGGTCGGCAGGGAGACCGCCGTGCGC 
CTGGGCGTGAACAGTGACGAAGATCTGCTCGGCGGTTTCGTCGAGCACGCGTTCATCGCCGGCAAGGCCATC 
GTCCATCCGCTGCCGCGCGGCGGCGTGGCGCCGGAAGGCTGGAACCCGCTGTTCGCGGAGAAGGTCCGCGAC 
GTCGTGCTCAACGGCGTCAGCGTCTTCAGCCTGGCCGACGCACACCGCGCCGGCGCCCGCCTGCTCGCCGAA 
GGACCGGTGCGGGCCAAGCTGGCGGAGGCCTGTGGCGGCCTCGGCCAGTACGTGGCGCACGACCTCGACGAA 
CTGGACGGCTGGCTCGGCGGGCTGGAGGAGCGCCAGTTGGCGCAGGGCCTGGTACTGGAAGCCAACCTGGAC 
GGGGTCGTTACCCATAGCGTCGGCCAGCTCCGGGTCAACGGCTTcctGCTGAGCTACCACGGTCAGCAGCAC 
CAGACCCGCAACGCGCGCGGCGAACTGGTCTACGCCGGCTCCGACTTGCTGGTGGCGCGCGGTGGCTATGCC 
GAGCTGCTGACCCTGGACCTGGCCCGCGAGGTGCGCCAGGCCATCGAGTACGCGCGGATCTTCGACACCGCC 
GCGGCGATCTTCTTCCCCGGCTGCTTCGCCTCGCGGCGCAACTACGACATTGCCCAGGGCCGGGACGGCAAC 
GGTCGGGAGCGCTTCGGCGTGCTCGAGCAGTCCTGGCGGGTCGGCGGCGCGAGCAGCGCCGAGATCGCCGCG 
CTGGAGGCCTTCCGCGCCGACCCGGGACTGCCCGCGGTGCGCGCCGCGTCGTTCGAGATCCACGAAGACAAG 
CGCCTGCCGGACAACAGCCGGGTGATCTATCGCGGCCCCGACGAACACGGCGACTTCCTGCTCAAATATGCG 
ATGACGGGGGAGGCATGA