ViewGene
Locus Name:
GeneID:
Location:

GeneID:1814
TrivialName: PA14_11420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11420
PAO1 Ortholog Locus:PA4054
Sequence Length:1098
Protein Length:365
Start: 990670
Stop: 991767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07441.1|AE004822_1 (AE004822) GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase [Pseudomonas aeruginosa PAO1]
Identities = 365/365 (100%), Positives = 365/365 (100%)
Sequence:
ATGGCACTCAACACGATCGACGAACTGATCGAAGACATCCGCCAAGGCAAGATGGTCATCCTGATGGATGAC
GAGGACCGCGAGAACGAAGGCGACCTGATCATGGCCGCCGAATGCGTCCGCACCGAAGACATCAACTTCATG
GTCAAGCATGCCCGCGGCCTGGTCTGCATGCCGATGACCCGCGAGCGTTGCGAGCGCCTCGGCCTGCCGCTG
ATGGTGCAGCGCAACGGCTCCGGCTTCGGCACCAAGTTCACTGTCTCCATCGAGGCCGCCGAGGGCGTCACC
ACCGGCATCTCCGCCGCGGACCGCGCCCGCACCGTGCAGGCTGCGGCGGCGAAGAACGCCGTGGCCGCCGAC
ATCGTCAGCCCCGGCCACATCTTCCCGCTGATGGCCCAGCCAGGCGGTACCCTGGCTCGCGCCGGGCACACC
GAGGCGGCCTGCGACCTGGCGCGGATGGCCGGGTTCGAACCGTCCGGGGTGATCTGCGAGGTGATGAACGAC
GACGGCAGCATGGCTCGCCGGCCCGAACTGGAGGCGTTCGCCGCCGAGCACGGGATCAAGATCGGCACCATC
GCCGACCTGATCCACTACCGGCTGATCCACGAGCGCACCGTCGAGCGCATCGCCGAGCAGCCGCTGGACAGC
GAACTGGGCCACTTCAACCTGATCACCTACCGCGACTCGGTGGAGGGCGACGTGCACCTGGCGCTGACCCTC
GGCAAGGTCTGCGCGGAAGAGCCGACCCTGGTCCGCGTGCACAACATGGACCCGCTGCGCGACCTGCTGCAG
GTCAACCAGCCGGGCCGCTGGAGCCTGCGCGCGGCGATGACCAAGGTCGCCGAGGCGGGCAGCGGCGTGGTG
CTGCTGCTCGGCCACCAGATCGGCGGCGACGACCTGCTCGCCCATGTCCGCGAGATCGCTTCGGCGCCGGCC
CCGGCGCCCAAGGCCACCACCACCTACAGCACCGTCGGTGCCGGCTCGCAGATCCTGCGCGACCTCGGCGTG
CGCAAGATGCGCCTGCTGAGTGCGCCGATGCGCTTCAATGCGATATCCGGTTTCGACCTGGAAGTTGTAGAA
TACCTGCCCGCCGAATAA
Translation:
MALNTIDELIEDIRQGKMVILMDDEDRENEGDLIMAAECVRTEDINFMVKHARGLVCMPMTRERCERLGLPL
MVQRNGSGFGTKFTVSIEAAEGVTTGISAADRARTVQAAAAKNAVAADIVSPGHIFPLMAQPGGTLARAGHT
EAACDLARMAGFEPSGVICEVMNDDGSMARRPELEAFAAEHGIKIGTIADLIHYRLIHERTVERIAEQPLDS
ELGHFNLITYRDSVEGDVHLALTLGKVCAEEPTLVRVHNMDPLRDLLQVNQPGRWSLRAAMTKVAEAGSGVV
LLLGHQIGGDDLLAHVREIASAPAPAPKATTTYSTVGAGSQILRDLGVRKMRLLSAPMRFNAISGFDLEVVE
YLPAE*
AnnotationID:1823GeneID:1814
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 18:06:38
Gene Name:ribB
Confidence Code:2
GeneProduct:GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
Cell Localization:()
Synonyms:ribA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0108,pfam00926,KOG1284
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
dbj|BAC44851.1| (AB065118) GTP cyclohydrolase
II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Photobacterium phosphoreum]
Length: 370
PctIdentity: 57.29
PctSimilarity: 74.86
Gaps: 8
BitScore: 1056.0






 
Structural Features:
gnl|CDD|9983 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism]
Length = 203
Score =  302 bits (774), Expect = 1e-82
Identities = 124/204 (60%), Positives = 148/204 (72%), Gaps = 1/204 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20778




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34660




  
Author/Investigator(s):
        Kasai S, Sumimoto T.





  
Title:
        Stimulated biosynthesis of flavins in Photobacterium phosphoreum IFO 13896 and the presence of complete rib operons in two species of luminous bacteria.




  
PubMed:
        12444973


MedLine:
        




    
Source:
Eur J Biochem. 2002 Dec;269(23):5851-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=22335717&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:1814
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3188
                           PA4054_tr
                           translation of PA4054
                           365
                           99.99
                           99.99
                           0
                           1855.0
     

     
     
98937
                           gb|AAG07441.1|AE004822_1
                           (AE004822) GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase [Pseudomonas aeruginosa PAO1]
                           365
                           99.99
                           99.99
                           0
                           1855.0
     

     
     
98939
                           gb|AAO54234.1|
                           (AE016858) 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II [Pseudomonas syringae pv. tomato str. DC3000]
                           366
                           83.87
                           90.16
                           4
                           1570.0
     

     
     
98938
                           gb|AAN66143.1|AE016242_11
                           (AE016775) 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II [Pseudomonas putida KT2440]
                           372
                           83.33
                           90.86
                           10
                           1598.0
     

     
     
98943
                           gb|AAF95413.1|
                           (AE004298) 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II [Vibrio cholerae O1 biovar eltor str. N16961]
                           373
                           58.44
                           71.58
                           12
                           1053.0
     

     






      

          
GC ORFID: 44816How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4054Glimmer Score: 

          
Start: 3963267Stop: 3962170

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4054 translation of PA4054Homolog Bit Score 719.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5264 (ORF: BLASTX 608.0), psyr_15may02_Scaffold1_revised_gene160 (ORF: BLASTX 410.0), t_PA4054 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACTCAACACGATCGACGAACTGATCGAAGACATCCGCCAAGGCAAGATGGTCATCCTGATGGATGAC 
GAGGACCGCGAGAACGAAGGCGACCTGATCATGGCCGCCGAATGCGTCCGCACCGAAGACATCAACTTCATG 
GTCAAGCATGCCCGCGGCCTGGTCTGCATGCCGATGACCCGCGAGCGTTGCGAGCGCCTCGGCCTGCCGCTG 
ATGGTGCAGCGCAACGGCTCCGGCTTCGGCACCAAGTTCACTGTCTCCATCGAGGCCGCCGAGGGCGTCACC 
ACCGGCATCTCCGCCGCGGACCGCGCCCGCACCGTGCAGGCTGCGGCGGCGAAGAACGCCGTGGCCGCCGAC 
ATCGTCAGCCCCGGCCACATCTTCCCGCTGATGGCCCAGCCAGGCGGTACCCTGGCTCGCGCCGGGCACACC 
GAGGCGGCCTGCGACCTGGCGCGGATGGCCGGGTTCGAACCGTCCGGGGTGATCTGCGAGGTGATGAACGAC 
GACGGCAGCATGGCTCGCCGGCCCGAACTGGAGGCGTTCGCCGCCGAGCACGGGATCAAGATCGGCACCATC 
GCCGACCTGATCCACTACCGGCTGATCCACGAGCGCACCGTCGAGCGCATCGCCGAGCAGCCGCTGGACAGC 
GAACTGGGCCACTTCAACCTGATCACCTACCGCGACTCGGTGGAGGGCGACGTGCACCTGGCGCTGACCCTC 
GGCAAGGTCTGCGCGGAAGAGCCGACCCTGGTCCGCGTGCACAACATGGACCCGCTGCGCGACCTGCTGCAG 
GTCAACCAGCCGGGCCGCTGGAGCCTGCGCGCGGCGATGACCAAGGTCGCCGAGGCGGGCAGCGGCGTGGTG 
CTGCTGCTCGGCCACCAGATCGGCGGCGACGACCTGCTCGCCCATGTCCGCGAGATCGCTTCGGCGCCGGCC 
CCGGCGCCCAAGGCCACCACCACCTACAGCACCGTCGGTGCCGGCTCGCAGATCCTGCGCGACCTCGGCGTG 
CGCAAGATGCGCCTGCTGAGTGCGCCGATGCGCTTCAATGCGATATCCGGTTTCGACCTGGAAGTTGTAGAA 
TACCTGCCCGCCGAATAA