ViewGene

Locus Name:
GeneID:
Location:

GeneID:1813
TrivialName: PA14_45910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45910
PAO1 Ortholog Locus:PA1435
Sequence Length:1158
Protein Length:385
Start: 4081416
Stop: 4080259
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04824.1|AE004573_3 (AE004573) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 382/385 (99%), Positives = 382/385 (99%)
Sequence:
ATGCAGGCGTTGCGCAGTGGTGGGGGACGGGTCCTGGTGGGCGTGCTGGCGGCGGGCCTGGTCGCCTTCGGC
GGTTGGGCATGGCTCGGCGGCGACGCCGGGGCGAAGGCGGCGCCCGCGCCGGCCAGGGTCCCGGTGAACGTG
GCACGGGTGGAGCGGCGCGACGTCGAGCAACAGGTCAGCGGCATCGGCACGGTGACTTCGTTGCACAACGTG
GTGATCCGCACCCAGATCGACGGCCAGTTGACCCGCCTGCTGGTGAGCGAAGGGCAGATGGTCGAGGCGGGC
GAGTTGCTGGCGACCATCGATGACCGCGCCGTCGTCGCCGCGCTGGAGCAGGCGCAGGCCTCCAGGGCGAGC
AACCAGGCCCAGCTGAAATCCGCCGAGCAGGACCTGCAACGCTACCGCAGCCTGTATGCCGAGCGTGCGGTG
TCACGCCAACTGCTGGACCAGCAGCAGGCGACGGTCGACCAGTTGCGCGCGACCCTGAAGGCCAACGATGCC
ACCATCAACGCCGAGCGGGTGCGCCTGTCCTACACCCGGATCACCTCGCCGGTATCCGGCAAGGTCGGTATC
CGCAACGTCGATGTCGGCAACCTGGTGCGGGTCGGCGACAGTCTCGGCCTGTTCAGCGTGACCCAGATCGCA
CCGATCTCCGTAGTCTTCTCCCTGCAACAGGAACAGTTGCCCCAGTTGCAGGCGCTGCTCGGCGGCGAGGCG
GCGGTGCGCGCCTACAGCCGCGACGGCGGGAGCGCGCTGGGCGAGGGCCGGTTGCTGACCATCGACAACCAG
ATCGACAGTTCCACCGGCACCATCCGCGTGCGCGCCTCCTTCGATAACCGCCAGGCCCGGCTCTGGCCCGGG
CAGTTCGTCGCGGTGAGCCTGCACACCGGGGTCCGGCGCGACCAGTTGGTGCTGTCGAGCAAGGCGGTGCGC
CGCGGCCTGGAGGGCAATTTCGTCTACCGGGTCGCCGCCGACCGGGTCGAGGCGGTGCCGGTGCGGGTGCTC
CAGGACATCGACGGCCTCAGTGTGGTGGAAGGCCTGGCCAGCGGTGACCAGGTGGTGGTGGACGGCCACTCG
CGGCTGATGCCCGGCGCCCTGGTCGATATCCAGGAGCCGCGCCCGAGCCTGGCCCAGGCCACGGAGCGGCGG
CCGTGA
Translation:
MQALRSGGGRVLVGVLAAGLVAFGGWAWLGGDAGAKAAPAPARVPVNVARVERRDVEQQVSGIGTVTSLHNV
VIRTQIDGQLTRLLVSEGQMVEAGELLATIDDRAVVAALEQAQASRASNQAQLKSAEQDLQRYRSLYAERAV
SRQLLDQQQATVDQLRATLKANDATINAERVRLSYTRITSPVSGKVGIRNVDVGNLVRVGDSLGLFSVTQIA
PISVVFSLQQEQLPQLQALLGGEAAVRAYSRDGGSALGEGRLLTIDNQIDSSTGTIRVRASFDNRQARLWPG
QFVAVSLHTGVRRDQLVLSSKAVRRGLEGNFVYRVAADRVEAVPVRVLQDIDGLSVVEGLASGDQVVVDGHS
RLMPGALVDIQEPRPSLAQATERRP*
AnnotationID:1822GeneID:1813
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 08:08:47
Gene Name:
Confidence Code:3
GeneProduct:putative RND efflux membrane fusion protein precursor
Cell Localization:()
Synonyms:PA1435
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative HlyD family secretion protein
Functional Category Confidence Code:5
COGs:COG0845
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54833.1| (AE016860) HlyD family secretion protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 388

 Score =  328 bits (842), Expect = 3e-89
 Identities = 179/333 (53%), Positives = 236/333 (70%), Gaps = 6/333 (1%)

>emb|CAD18348.1| (AL646083) PUTATIVE RESISTANCE TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 449

 Score =  270 bits (690), Expect = 1e-71
 Identities = 152/375 (40%), Positives = 231/375 (61%), Gaps = 5/375 (1%)

>emb|CAE34795.1| (BX640450) HlyD family secretion protein [Bordetella
           bronchiseptica]
          Length = 416

 Score =  266 bits (681), Expect = 1e-70
 Identities = 150/384 (39%), Positives = 231/384 (60%), Gaps = 18/384 (4%)
Structural Features:
COG0845, AcrA, Membrane-fusion protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 372 residues,  97.6% aligned
Score =  115 bits (288), Expect = 9e-27
Identities = 123/366 (33%), Positives = 179/366 (48%), Gaps = 8/366 (2%)
Genomic Context:
Comment:
ReferenceID:3629
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20776
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37416
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1813_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1813

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3186 PA1435_tr translation of PA1435 385 99.22 99.22 0 1857.0
98931 gb|AAG04824.1|AE004573_3 (AE004573) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1] 385 99.22 99.22 0 1857.0
98932 gb|AAO54833.1| (AE016860) HlyD family secretion protein [Pseudomonas syringae pv. tomato str. DC3000] 393 48.34 63.35 13 849.0
98936 dbj|BAC45541.1| (AP005935) blr0276 [Bradyrhizobium japonicum USDA 110] 405 38.76 56.04 35 658.0
98935 gb|AAQ60402.1| (AE016919) probable membrane protein [Chromobacterium violaceum ATCC 12472] 426 37.32 56.33 55 689.0
GC ORFID: 44815How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1435Glimmer Score:
Start: 872493Stop: 873650
Length: 1158
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1435 translation of PA1435Homolog Bit Score 719.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4944 (ORF: BLASTX 338.0), t_PA1435 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGGCGTTGCGCAGTGGTGGGGGACGGGTCCTGGTGGGCGTGCTGGCGGCGGGCCTGGTCGCCTTCGGC
GGTTGGGCATGGCTCGGCGGCGACGCCGGGGCGAAGGCGGCGCCCGCGCCGGCCAGGGTCCCGGTGAACGTG
GCACGGGTGGAGCGGCGCGACGTCGAGCAACAGGTCAGCGGCATCGGCACGGTGACTTCGTTGCACAACGTG
GTGATCCGCACCCAGATCGACGGCCAGTTGACCCGCCTGCTGGTGAGCGAAGGGCAGATGGTCGAGGCGGGC
GAGTTGCTGGCGACCATCGATGACCGCGCCGTCGTCGCCGCGCTGGAGCAGGCGCAGGCCTCCAGGGCGAGC
AACCAGGCCCAGCTGAAATCCGCCGAGCAGGACCTGCAACGCTACCGCAGCCTGTATGCCGAGCGTGCGGTG
TCACGCCAACTGCTGGACCAGCAGCAGGCGACGGTCGACCAGTTGCGCGCGACCCTGAAGGCCAACGATGCC
ACCATCAACGCCGAGCGGGTGCGCCTGTCCTACACCCGGATCACCTCGCCGGTATCCGGCAAGGTCGGTATC
CGCAACGTCGATGTCGGCAACCTGGTGCGGGTCGGCGACAGTCTCGGCCTGTTCAGCGTGACCCAGATCGCA
CCGATCTCCGTAGTCTTCTCCCTGCAACAGGAACAGTTGCCCCAGTTGCAGGCGCTGCTCGGCGGCGAGGCG
GCGGTGCGCGCCTACAGCCGCGACGGCGGGAGCGCGCTGGGCGAGGGCCGGTTGCTGACCATCGACAACCAG
ATCGACAGTTCCACCGGCACCATCCGCGTGCGCGCCTCCTTCGATAACCGCCAGGCCCGGCTCTGGCCCGGG
CAGTTCGTCGCGGTGAGCCTGCACACCGGGGTCCGGCGCGACCAGTTGGTGCTGTCGAGCAAGGCGGTGCGC
CGCGGCCTGGAGGGCAATTTCGTCTACCGGGTCGCCGCCGACCGGGTCGAGGCGGTGCCGGTGCGGGTGCTC
CAGGACATCGACGGCCTCAGTGTGGTGGAAGGCCTGGCCAGCGGTGACCAGGTGGTGGTGGACGGCCACTCG
CGGCTGATGCCCGGCGCCCTGGTCGATATCCAGGAGCCGCGCCCGAGCCTGGCCCAGGCCACGGAGCGGCGG
CCGTGA