|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG04824.1|AE004573_3 (AE004573) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 382/385 (99%), Positives = 382/385 (99%)
|
Sequence:
ATGCAGGCGTTGCGCAGTGGTGGGGGACGGGTCCTGGTGGGCGTGCTGGCGGCGGGCCTGGTCGCCTTCGGC
GGTTGGGCATGGCTCGGCGGCGACGCCGGGGCGAAGGCGGCGCCCGCGCCGGCCAGGGTCCCGGTGAACGTG
GCACGGGTGGAGCGGCGCGACGTCGAGCAACAGGTCAGCGGCATCGGCACGGTGACTTCGTTGCACAACGTG
GTGATCCGCACCCAGATCGACGGCCAGTTGACCCGCCTGCTGGTGAGCGAAGGGCAGATGGTCGAGGCGGGC
GAGTTGCTGGCGACCATCGATGACCGCGCCGTCGTCGCCGCGCTGGAGCAGGCGCAGGCCTCCAGGGCGAGC
AACCAGGCCCAGCTGAAATCCGCCGAGCAGGACCTGCAACGCTACCGCAGCCTGTATGCCGAGCGTGCGGTG
TCACGCCAACTGCTGGACCAGCAGCAGGCGACGGTCGACCAGTTGCGCGCGACCCTGAAGGCCAACGATGCC
ACCATCAACGCCGAGCGGGTGCGCCTGTCCTACACCCGGATCACCTCGCCGGTATCCGGCAAGGTCGGTATC
CGCAACGTCGATGTCGGCAACCTGGTGCGGGTCGGCGACAGTCTCGGCCTGTTCAGCGTGACCCAGATCGCA
CCGATCTCCGTAGTCTTCTCCCTGCAACAGGAACAGTTGCCCCAGTTGCAGGCGCTGCTCGGCGGCGAGGCG
GCGGTGCGCGCCTACAGCCGCGACGGCGGGAGCGCGCTGGGCGAGGGCCGGTTGCTGACCATCGACAACCAG
ATCGACAGTTCCACCGGCACCATCCGCGTGCGCGCCTCCTTCGATAACCGCCAGGCCCGGCTCTGGCCCGGG
CAGTTCGTCGCGGTGAGCCTGCACACCGGGGTCCGGCGCGACCAGTTGGTGCTGTCGAGCAAGGCGGTGCGC
CGCGGCCTGGAGGGCAATTTCGTCTACCGGGTCGCCGCCGACCGGGTCGAGGCGGTGCCGGTGCGGGTGCTC
CAGGACATCGACGGCCTCAGTGTGGTGGAAGGCCTGGCCAGCGGTGACCAGGTGGTGGTGGACGGCCACTCG
CGGCTGATGCCCGGCGCCCTGGTCGATATCCAGGAGCCGCGCCCGAGCCTGGCCCAGGCCACGGAGCGGCGG
CCGTGA |
Translation:
MQALRSGGGRVLVGVLAAGLVAFGGWAWLGGDAGAKAAPAPARVPVNVARVERRDVEQQVSGIGTVTSLHNV
VIRTQIDGQLTRLLVSEGQMVEAGELLATIDDRAVVAALEQAQASRASNQAQLKSAEQDLQRYRSLYAERAV
SRQLLDQQQATVDQLRATLKANDATINAERVRLSYTRITSPVSGKVGIRNVDVGNLVRVGDSLGLFSVTQIA
PISVVFSLQQEQLPQLQALLGGEAAVRAYSRDGGSALGEGRLLTIDNQIDSSTGTIRVRASFDNRQARLWPG
QFVAVSLHTGVRRDQLVLSSKAVRRGLEGNFVYRVAADRVEAVPVRVLQDIDGLSVVEGLASGDQVVVDGHS
RLMPGALVDIQEPRPSLAQATERRP* |
AnnotationID:1822 | GeneID:1813 |
|
Modification Date/Time: |
2005-02-24 08:08:47 |
|
|
|
GeneProduct: | putative RND efflux membrane fusion protein precursor |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (19) Protein secretion/export apparatus |
|
Alternate Gene Product Name: | putative HlyD family secretion protein |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | transport of small molecules |
|
|
|
|
Homology: | >gb|AAO54833.1| (AE016860) HlyD family secretion protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 388
Score = 328 bits (842), Expect = 3e-89
Identities = 179/333 (53%), Positives = 236/333 (70%), Gaps = 6/333 (1%)
>emb|CAD18348.1| (AL646083) PUTATIVE RESISTANCE TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 449
Score = 270 bits (690), Expect = 1e-71
Identities = 152/375 (40%), Positives = 231/375 (61%), Gaps = 5/375 (1%)
>emb|CAE34795.1| (BX640450) HlyD family secretion protein [Bordetella
bronchiseptica]
Length = 416
Score = 266 bits (681), Expect = 1e-70
Identities = 150/384 (39%), Positives = 231/384 (60%), Gaps = 18/384 (4%) |
|
Structural Features: | COG0845, AcrA, Membrane-fusion protein
[Cell envelope biogenesis, outer membrane]
CD-Length = 372 residues, 97.6% aligned
Score = 115 bits (288), Expect = 9e-27
Identities = 123/366 (33%), Positives = 179/366 (48%), Gaps = 8/366 (2%) |
|
|
|
|
|