ViewGene

Locus Name:
GeneID:
Location:

GeneID:1811
TrivialName: PA14_29120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29120
PAO1 Ortholog Locus:PA2708
Sequence Length:1086
Protein Length:361
Start: 2519151
Stop: 2520236
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06096.1|AE004699_1 (AE004699) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 361/361 (100%), Positives = 361/361 (100%)
Sequence:
ATGAAGAAACGCTATGCCATTCCCCTGGGCAGCCTGGCGGCGCTGCTTCTGTTGTTGCTGGCGCTGCACCTG
GCGCTGCCGTACCTGGTGCGCGACTACCTGAACGGCAAGCTGGCCGACATGGGCGACTACCGTGGGCACATC
GCCGACGTCGACCTGGCGCTCTGGCGCGGCGCGTATCGGATCGACGGGCTGAGCATCGTCAAGGACAACGGC
AAGGTGCCGGTGCCGTTCCTCGACGCGCCGAGCATCGACCTGTCGGTGAGCTGGCAGGCGCTCTGGGATGAT
CACGCAGTAGTGGCGCGGGTGGTCTTCGAGCGTCCGCAGCTCAACTTCGTCGATGCCGGCGGCGACCGCGAC
GCCTCGCAGACCGGTGCCGGCACCGACTGGCGCGAGCAACTGGACAAGCTGCTGCCGATCACCCTCAACGAG
GTGCGGGTGGTGGACGGCACCCTGCGTTTCCGCAACTTCACTTCGAAGCCGCCGGTGAACCTCCACGCCTCG
GCGCTCAACGCCAGCATCTATAACCTGACCAACGTGGCCGACGCCCGGGGCGAGCGGCCGGCGCGTCTCGAA
GGCACGGCGCGGATACTCGGCCAGGCGCCGCTGGAAGTGGCGGCGCATTTCGACCCGCTGAGCGACTTCGAG
GACTTCGACCTGCGCCTGCGGGTCACCCGGGTCGAGCTGAAGCGGCTCAACGACTTCGCCAGCGCCTATGGC
AAGTTCGACTTCAATGCCGGCACCGGCGACCTGGTGCTGGAGGCCCAGGCTAAACGCGGCCAGCTGGACGGC
TACATCAAGCCGCTGCTGCGCGACGTGGACGTGTTCAACTGGCGGCAGGACGTGGAGGATGGCGACAAGAAC
CTGTTCCGCTCGGTGTGGGAGGCGCTGGTCGGCGGGGGCGAGACGGTGCTGAAGAACCAGCGCAAAGACCAG
TTCGCAACCCGTGTGAGCCTGAGCGGTAATATCCACCAGCGGGACGTCAGCGCGTTCCAGGCGTTCCTCGGG
ATTCTCCGCAACGCGTTCGTCGAGGCGTTCAACGCCCGTTTCGAGCGTTCCCCGGCGACGCGCGACGACGAC
GGCTGA
Translation:
MKKRYAIPLGSLAALLLLLLALHLALPYLVRDYLNGKLADMGDYRGHIADVDLALWRGAYRIDGLSIVKDNG
KVPVPFLDAPSIDLSVSWQALWDDHAVVARVVFERPQLNFVDAGGDRDASQTGAGTDWREQLDKLLPITLNE
VRVVDGTLRFRNFTSKPPVNLHASALNASIYNLTNVADARGERPARLEGTARILGQAPLEVAAHFDPLSDFE
DFDLRLRVTRVELKRLNDFASAYGKFDFNAGTGDLVLEAQAKRGQLDGYIKPLLRDVDVFNWRQDVEDGDKN
LFRSVWEALVGGGETVLKNQRKDQFATRVSLSGNIHQRDVSAFQAFLGILRNAFVEAFNARFERSPATRDDD
G*
AnnotationID:1820GeneID:1811
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2708
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3625
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20772
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1811

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3182 PA2708_tr translation of PA2708 361 99.99 99.99 0 1859.0
98838 gb|AAG06096.1|AE004699_1 (AE004699) hypothetical protein PA2708 [Pseudomonas aeruginosa PAO1] 361 99.99 99.99 0 1859.0
98839 gb|AAN70145.1|AE016654_2 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 361 70.91 82.27 4 1317.0
98840 gb|AAO57369.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 361 65.92 80.88 5 1289.0
GC ORFID: 44813How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2708Glimmer Score:
Start: 2434775Stop: 2433690
Length: 1086
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2708 translation of PA2708Homolog Bit Score 720.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1528 (ORF: BLASTX 504.0), t_PA2708 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAAACGCTATGCCATTCCCCTGGGCAGCCTGGCGGCGCTGCTTCTGTTGTTGCTGGCGCTGCACCTG
GCGCTGCCGTACCTGGTGCGCGACTACCTGAACGGCAAGCTGGCCGACATGGGCGACTACCGTGGGCACATC
GCCGACGTCGACCTGGCGCTCTGGCGCGGCGCGTATCGGATCGACGGGCTGAGCATCGTCAAGGACAACGGC
AAGGTGCCGGTGCCGTTCCTCGACGCGCCGAGCATCGACCTGTCGGTGAGCTGGCAGGCGCTCTGGGATGAT
CACGCAGTAGTGGCGCGGGTGGTCTTCGAGCGTCCGCAGCTCAACTTCGTCGATGCCGGCGGCGACCGCGAC
GCCTCGCAGACCGGTGCCGGCACCGACTGGCGCGAGCAACTGGACAAGCTGCTGCCGATCACCCTCAACGAG
GTGCGGGTGGTGGACGGCACCCTGCGTTTCCGCAACTTCACTTCGAAGCCGCCGGTGAACCTCCACGCCTCG
GCGCTCAACGCCAGCATCTATAACCTGACCAACGTGGCCGACGCCCGGGGCGAGCGGCCGGCGCGTCTCGAA
GGCACGGCGCGGATACTCGGCCAGGCGCCGCTGGAAGTGGCGGCGCATTTCGACCCGCTGAGCGACTTCGAG
GACTTCGACCTGCGCCTGCGGGTCACCCGGGTCGAGCTGAAGCGGCTCAACGACTTCGCCAGCGCCTATGGC
AAGTTCGACTTCAATGCCGGCACCGGCGACCTGGTGCTGGAGGCCCAGGCTAAACGCGGCCAGCTGGACGGC
TACATCAAGCCGCTGCTGCGCGACGTGGACGTGTTCAACTGGCGGCAGGACGTGGAGGATGGCGACAAGAAC
CTGTTCCGCTCGGTGTGGGAGGCGCTGGTCGGCGGGGGCGAGACGGTGCTGAAGAACCAGCGCAAAGACCAG
TTCGCAACCCGTGTGAGCCTGAGCGGTAATATCCACCAGCGGGACGTCAGCGCGTTCCAGGCGTTCCTCGGG
ATTCTCCGCAACGCGTTCGTCGAGGCGTTCAACGCCCGTTTCGAGCGTTCCCCGGCGACGCGCGACGACGAC
GGCTGA