ViewGene
Locus Name:
GeneID:
Location:

GeneID:1807
TrivialName: PA14_44920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44920
PAO1 Ortholog Locus:PA1509
Sequence Length:1143
Protein Length:380
Start: 4005020
Stop: 4006162
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04898.1|AE004579_10 (AE004579) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 350/380 (92%), Positives = 359/380 (94%)
Sequence:
ATGATGCATCCCCGTCGGTTGCTTGCTGTACTTGGGTTGGTGGTCTTGACCAGCATGACCAGTTGCACTTCG
TTTTCTTCTTCTCGGAGCTCTTCCATGGACAAGACCGGATGGATCACTCATTGCTTTGGTCGCTTTCTGATT
GATCTGCCACCTGACGCGGTAGTCAATGCCGGATACTACCTATGGGGAGACAGAATTGAGTACTTAGATGAT
AAACCTACCGAACTGGCAGCCAGGGTTGATCGTCTTGAAAAAGAGTGGAGGACTCAGAAGCATAAATCCAAA
GGTAACATGTTTCTTCGTAAAATTGACTTTGGCAATGAATCAGTAGGTTTATTGTCTTGGTCTTCAGAGGTT
GCCTCTAAAACCTATTTATTGGATACCTATGTTACATCTAAGCCTACGTGGCATGCCTATCGTTGGAAAGGG
AAAGTTTCGGTAGACAGAGAGCAACGTGCTGTAGAGATGTCTAGGACTTTAGCTCGAAATCTACGCTCGCGC
GCGCCCAAAGAAATCCCCAGCGGGCCGGGCTTTTGCATCGACCAAGCTTATATTGCAGGGGATAATTTTCAA
GATGAAGAGTTTGGGGTTGGCGTTACGTTCCCCAACCACCCCGGCGTAGACTTCGAGTTTCGTTCCTTAACG
GGGGCTGCGCAAAAAAACCTGCTTGAGCGCGTTGGTGGCCTCATGCAGGAATTGCTCTCCACGTTTGCAGGT
ATGGAAACATTAAGAAAAGGAAAGCATCCTGTCGGGAGCCTTCCCGGAGAGGAGTATCTGGTTGCGGGAAGC
GATAAGGGGCAGCGCGGCTATACCTTCATGTGGGAGGTTCAAGGCAAGGAGGAATCGCTAACCGAGCCCAAT
CTTACTGCGGGACTGGCGGTACTGGAACGCAGCAATGAAAACGGTAAACCACCGCCCCCTGCCTTCAAATCG
GACAAAGAGGCTTTGGAACTGTGGGACGCCATTGTCGATTCGATCCGCGTGCGCCCGACGTATTCATCGCCG
CGTGGCGGAAATGCCGGTCCTTCCCCTGCTCCGACACCTGCTACGCCTGGCGGCCAAACGCTCGGTGATGAC
TATGTCTACGAGGAATTCCTCTCCAGCCTGAAGCCGAAAGACAGCTGGCTGGACGACCTATAG
Translation:
MMHPRRLLAVLGLVVLTSMTSCTSFSSSRSSSMDKTGWITHCFGRFLIDLPPDAVVNAGYYLWGDRIEYLDD
KPTELAARVDRLEKEWRTQKHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHAYRWKG
KVSVDREQRAVEMSRTLARNLRSRAPKEIPSGPGFCIDQAYIAGDNFQDEEFGVGVTFPNHPGVDFEFRSLT
GAAQKNLLERVGGLMQELLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGYTFMWEVQGKEESLTEPN
LTAGLAVLERSNENGKPPPPAFKSDKEALELWDAIVDSIRVRPTYSSPRGGNAGPSPAPTPATPGGQTLGDD
YVYEEFLSSLKPKDSWLDDL*
AnnotationID:1816GeneID:1807
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1509
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20764




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1807
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3177
                           PA1509_tr
                           translation of PA1509
                           380
                           92.10
                           94.47
                           0
                           1858.0
     

     
     
98682
                           gb|AAG04898.1|AE004579_10
                           (AE004579) hypothetical protein PA1509 [Pseudomonas aeruginosa PAO1]
                           380
                           92.10
                           94.47
                           0
                           1858.0
     

     
     
98683
                           emb|CAD17921.1|
                           (AL646080) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           387
                           37.98
                           53.74
                           56
                           710.0
     

     
     
98684
                           emb|CAD17923.1|
                           (AL646080) HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
                           396
                           36.36
                           52.02
                           56
                           672.0
     

     
     
98685
                           emb|CAD17922.1|
                           (AL646080) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           384
                           35.67
                           48.95
                           79
                           652.0
     

     






      

          
GC ORFID: 44809How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1509Glimmer Score: 

          
Start: 948889Stop: 947747

          
Length: 1143


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1509 translation of PA1509Homolog Bit Score 720.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATGCATCCCCGTCGGTTGCTTGCTGTACTTGGGTTGGTGGTCTTGACCAGCATGACCAGTTGCACTTCG 
TTTTCTTCTTCTCGGAGCTCTTCCATGGACAAGACCGGATGGATCACTCATTGCTTTGGTCGCTTTCTGATT 
GATCTGCCACCTGACGCGGTAGTCAATGCCGGATACTACCTATGGGGAGACAGAATTGAGTACTTAGATGAT 
AAACCTACCGAACTGGCAGCCAGGGTTGATCGTCTTGAAAAAGAGTGGAGGACTCAGAAGCATAAATCCAAA 
GGTAACATGTTTCTTCGTAAAATTGACTTTGGCAATGAATCAGTAGGTTTATTGTCTTGGTCTTCAGAGGTT 
GCCTCTAAAACCTATTTATTGGATACCTATGTTACATCTAAGCCTACGTGGCATGCCTATCGTTGGAAAGGG 
AAAGTTTCGGTAGACAGAGAGCAACGTGCTGTAGAGATGTCTAGGACTTTAGCTCGAAATCTACGCTCGCGC 
GCGCCCAAAGAAATCCCCAGCGGGCCGGGCTTTTGCATCGACCAAGCTTATATTGCAGGGGATAATTTTCAA 
GATGAAGAGTTTGGGGTTGGCGTTACGTTCCCCAACCACCCCGGCGTAGACTTCGAGTTTCGTTCCTTAACG 
GGGGCTGCGCAAAAAAACCTGCTTGAGCGCGTTGGTGGCCTCATGCAGGAATTGCTCTCCACGTTTGCAGGT 
ATGGAAACATTAAGAAAAGGAAAGCATCCTGTCGGGAGCCTTCCCGGAGAGGAGTATCTGGTTGCGGGAAGC 
GATAAGGGGCAGCGCGGCTATACCTTCATGTGGGAGGTTCAAGGCAAGGAGGAATCGCTAACCGAGCCCAAT 
CTTACTGCGGGACTGGCGGTACTGGAACGCAGCAATGAAAACGGTAAACCACCGCCCCCTGCCTTCAAATCG 
GACAAAGAGGCTTTGGAACTGTGGGACGCCATTGTCGATTCGATCCGCGTGCGCCCGACGTATTCATCGCCG 
CGTGGCGGAAATGCCGGTCCTTCCCCTGCTCCGACACCTGCTACGCCTGGCGGCCAAACGCTCGGTGATGAC 
TATGTCTACGAGGAATTCCTCTCCAGCCTGAAGCCGAAAGACAGCTGGCTGGACGACCTATAG