ViewGene
Locus Name:
GeneID:
Location:

GeneID:1806
TrivialName: PA14_07450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07450
PAO1 Ortholog Locus:PA0574
Sequence Length:1122
Protein Length:373
Start: 639858
Stop: 638737
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03963.1|AE004493_8 (AE004493) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 360/373 (96%), Positives = 364/373 (97%)
Sequence:
ATGAACGACCCACTCTGGATCTGGCAGCAGCCCGACTGGCCGCAGTTCAACTGGCAAGCCGAAGCGCTTGCA
CCACTGCTGCGCTCCTGTAGCCAGGCTCAGGGTCGTTTGTTAGGAATGCTCGGTGCCGTGGGGAGTGACACC
GAAGTGCAGAGCAGCCTGGATGCCATGCTGCAGAACATCGTCACCTCTTCAGCCATTGAGGGAGAGCAACTG
AATGTCGGTTCGGTGCGCTCATCACTGGCACGGCGACTGGGATTGCACGAAGAAGGTCGAACCACCTCTCGC
TCCGAAGGCCTGGCGGAACTGCTGCTCGATGCCACCCACGCACATCAAGAGCCGCTAGACGAACAGCGACTG
TTCACCTGGCACAGTTGGTTATTCCCCACCGATGACCAACTTCTGGCTCGACCACTACACATCGGCGCACTG
CGCGGCGAAGAGCCCATGCAGGTAGTTTCGGGTCGGATAGACCGCCCTACCGTATATTTCGAAGCCCCTCCC
CGCGCAGGGTTGGAAGCGCAACTGGCGGACTTTCTCGCCTGGTTCGAAAGCAGCCGCAGCGATGCCAGCCTC
GACCCCTTTCTGCGCGCCGGTATCGCACATTTCTGGTTCGTGACCCTGCATCCCTTCGACGACGGCAACGGT
CGCCTCACCCGCGCTATCACCGATCTGGCATTGGCTCAGGGCGAGCAGCAAGCCATTCGCTTCTACGCCATG
TCTGCGAGCATCCTCGACGACCGCGCCGGCTATTACCGCATCCTAGAAGCCAGTCAGAAAGGCGGGCTGGAT
ATCACCAAGTGGCTGCAGTGGTTTCTCGAAACCTTGCTCAAGAGCCTGGAGCAAGCCCTTGCCCGTATAGAC
CGCGTGCTGGTCAAGGCGCGCTTCTGGCAGGCACATCGCAGCCAAACGCTATCGGCGGAGCAGATCAAAGTG
CTTAACCGCCTGCTCGATGGCGGCGAAAGGGGGTTCGAGGACGGCATCAGTGCGGCGCAATACCAAGCTGTG
GCCAAGGTTTCCAAAGCCACCGCGACCCGTCACTTGAGCGACCTGCTGGAAAAGGGCTGCATCGAGCGACTG
CCCGGCGGAGGGCGTAGCACCCGTTACCAGATAGCACGCTGA
Translation:
MNDPLWIWQQPDWPQFNWQAEALAPLLRSCSQAQGRLLGMLGAVGSDTEVQSSLDAMLQNIVTSSAIEGEQL
NVGSVRSSLARRLGLHEEGRTTSRSEGLAELLLDATHAHQEPLDEQRLFTWHSWLFPTDDQLLARPLHIGAL
RGEEPMQVVSGRIDRPTVYFEAPPRAGLEAQLADFLAWFESSRSDASLDPFLRAGIAHFWFVTLHPFDDGNG
RLTRAITDLALAQGEQQAIRFYAMSASILDDRAGYYRILEASQKGGLDITKWLQWFLETLLKSLEQALARID
RVLVKARFWQAHRSQTLSAEQIKVLNRLLDGGERGFEDGISAAQYQAVAKVSKATATRHLSDLLEKGCIERL
PGGGRSTRYQIAR*
AnnotationID:1815GeneID:1806
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:01
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA0574
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3177
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20762




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1806
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3176
                           PA0574_tr
                           translation of PA0574
                           373
                           96.51
                           97.58
                           0
                           1860.0
     

     
     
98671
                           gb|AAG03963.1|AE004493_8
                           (AE004493) hypothetical protein PA0574 [Pseudomonas aeruginosa PAO1]
                           373
                           96.51
                           97.58
                           0
                           1860.0
     

     
     
98672
                           gb|AAO54066.1|
                           (AE016857) Fic family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           376
                           70.21
                           82.18
                           3
                           1405.0
     

     
     
98674
                           emb|CAC89302.1|
                           (AJ414142) conserved hypothetical protein [Yersinia pestis CO92]
                           377
                           55.96
                           69.23
                           5
                           1078.0
     

     
     
98673
                           gb|AAM87282.1|AE013977_1
                           (AE013977) hypothetical [Yersinia pestis KIM]
                           394
                           53.55
                           66.24
                           22
                           1078.0
     

     






      

          
GC ORFID: 44808How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0574Glimmer Score: 

          
Start: 6441201Stop: 6440080

          
Length: 1122


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0574 translation of PA0574Homolog Bit Score 721.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6789 (ORF: BLASTX 565.0), t_PA0574 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACCCACTCTGGATCTGGCAGCAGCCCGACTGGCCGCAGTTCAACTGGCAAGCCGAAGCGCTTGCA 
CCACTGCTGCGCTCCTGTAGCCAGGCTCAGGGTCGTTTGTTAGGAATGCTCGGTGCCGTGGGGAGTGACACC 
GAAGTGCAGAGCAGCCTGGATGCCATGCTGCAGAACATCGTCACCTCTTCAGCCATTGAGGGAGAGCAACTG 
AATGTCGGTTCGGTGCGCTCATCACTGGCACGGCGACTGGGATTGCACGAAGAAGGTCGAACCACCTCTCGC 
TCCGAAGGCCTGGCGGAACTGCTGCTCGATGCCACCCACGCACATCAAGAGCCGCTAGACGAACAGCGACTG 
TTCACCTGGCACAGTTGGTTATTCCCCACCGATGACCAACTTCTGGCTCGACCACTACACATCGGCGCACTG 
CGCGGCGAAGAGCCCATGCAGGTAGTTTCGGGTCGGATAGACCGCCCTACCGTATATTTCGAAGCCCCTCCC 
CGCGCAGGGTTGGAAGCGCAACTGGCGGACTTTCTCGCCTGGTTCGAAAGCAGCCGCAGCGATGCCAGCCTC 
GACCCCTTTCTGCGCGCCGGTATCGCACATTTCTGGTTCGTGACCCTGCATCCCTTCGACGACGGCAACGGT 
CGCCTCACCCGCGCTATCACCGATCTGGCATTGGCTCAGGGCGAGCAGCAAGCCATTCGCTTCTACGCCATG 
TCTGCGAGCATCCTCGACGACCGCGCCGGCTATTACCGCATCCTAGAAGCCAGTCAGAAAGGCGGGCTGGAT 
ATCACCAAGTGGCTGCAGTGGTTTCTCGAAACCTTGCTCAAGAGCCTGGAGCAAGCCCTTGCCCGTATAGAC 
CGCGTGCTGGTCAAGGCGCGCTTCTGGCAGGCACATCGCAGCCAAACGCTATCGGCGGAGCAGATCAAAGTG 
CTTAACCGCCTGCTCGATGGCGGCGAAAGGGGGTTCGAGGACGGCATCAGTGCGGCGCAATACCAAGCTGTG 
GCCAAGGTTTCCAAAGCCACCGCGACCCGTCACTTGAGCGACCTGCTGGAAAAGGGCTGCATCGAGCGACTG 
CCCGGCGGAGGGCGTAGCACCCGTTACCAGATAGCACGCTGA