ViewGene
Locus Name:
GeneID:
Location:

GeneID:1805
TrivialName: PA14_34140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34140
PAO1 Ortholog Locus:PA2360
Sequence Length:1101
Protein Length:366
Start: 3036369
Stop: 3037469
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05748.1|AE004662_3 (AE004662) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 359/366 (98%), Positives = 360/366 (98%)
Sequence:
ATGACCCTGCCTCTTTCCGGCAACGCCCTGTCCCTGGAAGTGCTGCTCGAACCCATCGCCCCAGAACAGCCG
TGCGGCCCCAGCCTGCGCTACGACCCGGACTACGACCGCCTGCGCGAGTTGCGCCGGGAGGACGACAGCAGC
CTGCCGACCGGCGTCTGGCAGGCGGAGGCCAAGCGCGCCGACTGGGCCGCGGTGGAGCAGTTGGCCAGCGAA
CTGTTGCAGCGGCGCAGCAAGGACCTGATGCTCGCCGCCTGGCTCGGCGAGGCCTGGCTGCAACGCGGCGGG
CTGGGCGGATTGCAGCGCGCGCTGGTGCTGCTGGCGGAACTCTGCGAGCGCTACCCCGAGGAGGTGCATCCG
CAAGCCCAGGACGGCGACCAGTCGTGGCGGGTGCCGCCCATCGACTGGCTGTTGCGCCGCTATGCCGAGCTG
CTGCACACGCGCCTGCCGCTGATGGGGCAGGGCGCCTTCGCCGAGATCACCCTCTATGCCTGGCAGAGGTTG
CAGCGCCAGCAGGTCGCCAGCGGCGACAGCAAGAGCGCCAAGGCGGCGCTGGAAGCGGCGCAACTTCAGCAG
AAGAAGCTCGACGAAGCGTTGCGCGCGGAGCCCCTGGTGCAATGGCAGCGCAAGCAGGCCAGCCTGCTCGCC
TGCCAGCAGCAACTGCAACGCCTGGAACAGTGGTGCGACCGCTGCCTGGGCGAACTCGCCCCCAGTTGCCAG
CCGCTGCGCGAGGTCATCGCGCAATGGCTGGCCTTGCTCAAGGAGTTCATCGCCATGCACCCGCAAGCGCCG
CTGCCCGAAGAACAGCCACCGGTCGCAGAGGCGGACGCCGCCGAAGGCGACGCGGACGGCGAGGAAAGCGTC
CCGGCGAGCGCGCCGAGCGGGCCGGCTGGCGCGCCGACCAGTCGCGAGGACGCCTACCGGCAACTGCTGCTG
ATCGCCGACTACCTGGCGCGCACCGAGCCGCACAGCCCGGTTCCCTACCTGATCAAGCGCGCGGTGGAATGG
GGCAACAAGCCGCTGAGCGAGCTGCTGGCGGAGCTGATCAATGCGGACTCGGAGGCGCGCCGGGTCTGGTCG
CTGCTTGGCGTACTGCCCTAG
Translation:
MTLPLSGNALSLEVLLEPIAPEQPCGPSLRYDPDYDRLRELRREDDSSLPTGVWQAEAKRADWAAVEQLASE
LLQRRSKDLMLAAWLGEAWLQRGGLGGLQRALVLLAELCERYPEEVHPQAQDGDQSWRVPPIDWLLRRYAEL
LHTRLPLMGQGAFAEITLYAWQRLQRQQVASGDSKSAKAALEAAQLQQKKLDEALRAEPLVQWQRKQASLLA
CQQQLQRLEQWCDRCLGELAPSCQPLREVIAQWLALLKEFIAMHPQAPLPEEQPPVAEADAAEGDADGEESV
PASAPSGPAGAPTSREDAYRQLLLIADYLARTEPHSPVPYLIKRAVEWGNKPLSELLAELINADSEARRVWS
LLGVLP*
AnnotationID:1814GeneID:1805
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2360
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3613




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20760




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32907




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1805_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1805
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3175
                           PA2360_tr
                           translation of PA2360
                           366
                           98.08
                           98.36
                           0
                           1860.0
     

     
     
98670
                           gb|AAG05748.1|AE004662_3
                           (AE004662) hypothetical protein PA2360 [Pseudomonas aeruginosa PAO1]
                           366
                           98.08
                           98.36
                           0
                           1860.0
     

     






      

          
GC ORFID: 44807How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2360Glimmer Score: 

          
Start: 1917547Stop: 1916447

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2360 translation of PA2360Homolog Bit Score 721.0

          
Other Homologs:  t_PA2360 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGCCTCTTTCCGGCAACGCCCTGTCCCTGGAAGTGCTGCTCGAACCCATCGCCCCAGAACAGCCG 
TGCGGCCCCAGCCTGCGCTACGACCCGGACTACGACCGCCTGCGCGAGTTGCGCCGGGAGGACGACAGCAGC 
CTGCCGACCGGCGTCTGGCAGGCGGAGGCCAAGCGCGCCGACTGGGCCGCGGTGGAGCAGTTGGCCAGCGAA 
CTGTTGCAGCGGCGCAGCAAGGACCTGATGCTCGCCGCCTGGCTCGGCGAGGCCTGGCTGCAACGCGGCGGG 
CTGGGCGGATTGCAGCGCGCGCTGGTGCTGCTGGCGGAACTCTGCGAGCGCTACCCCGAGGAGGTGCATCCG 
CAAGCCCAGGACGGCGACCAGTCGTGGCGGGTGCCGCCCATCGACTGGCTGTTGCGCCGCTATGCCGAGCTG 
CTGCACACGCGCCTGCCGCTGATGGGGCAGGGCGCCTTCGCCGAGATCACCCTCTATGCCTGGCAGAGGTTG 
CAGCGCCAGCAGGTCGCCAGCGGCGACAGCAAGAGCGCCAAGGCGGCGCTGGAAGCGGCGCAACTTCAGCAG 
AAGAAGCTCGACGAAGCGTTGCGCGCGGAGCCCCTGGTGCAATGGCAGCGCAAGCAGGCCAGCCTGCTCGCC 
TGCCAGCAGCAACTGCAACGCCTGGAACAGTGGTGCGACCGCTGCCTGGGCGAACTCGCCCCCAGTTGCCAG 
CCGCTGCGCGAGGTCATCGCGCAATGGCTGGCCTTGCTCAAGGAGTTCATCGCCATGCACCCGCAAGCGCCG 
CTGCCCGAAGAACAGCCACCGGTCGCAGAGGCGGACGCCGCCGAAGGCGACGCGGACGGCGAGGAAAGCGTC 
CCGGCGAGCGCGCCGAGCGGGCCGGCTGGCGCGCCGACCAGTCGCGAGGACGCCTACCGGCAACTGCTGCTG 
ATCGCCGACTACCTGGCGCGCACCGAGCCGCACAGCCCGGTTCCCTACCTGATCAAGCGCGCGGTGGAATGG 
GGCAACAAGCCGCTGAGCGAGCTGCTGGCGGAGCTGATCAATGCGGACTCGGAGGCGCGCCGGGTCTGGTCG 
CTGCTTGGCGTACTGCCCTAG