ViewGene

Locus Name:
GeneID:
Location:

GeneID:1804
TrivialName: PA14_14880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14880
PAO1 Ortholog Locus:PA3803
Sequence Length:1116
Protein Length:371
Start: 1262998
Stop: 1264113
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07190.1|AE004798_13 (AE004798) probable isoprenoid biosynthetic protein GcpE [Pseudomonas aeruginosa PAO1]
Identities = 371/371 (100%), Positives = 371/371 (100%)
Sequence:
ATGAGCATTCATAGCGCTTCTCCGATCATTCGCCGCAAGTCTCGGAAAATCTGGGTCGGCAACGTCCCGGTG
GGCGGCGATGCGCCGATCGCCGTGCAGAGCATGACCAACACCGAGACCTGCGACGTCGCTGCCACCGTCGCG
CAGATCCGCCGCCTGGAAGATGCCGGTGCGGACATCGTGCGGGTTTCCGTCCCCGACATGGACGCCGCCGAG
GCGTTCGGCAAGATCAAGCAGCAGGTCAACGTGCCGCTGGTCGCCGACATCCACTTCGACTATCGCATCGCC
CTGCGCGTCGCCGAGCTGGGAGTGGACTGCCTGCGCATCAATCCGGGCAACATCGGTCGCGAGGACCGGGTC
AAGGCCGTGGTCGACGCCGCGCGCGAGCGCAACATCCCGATCCGTATCGGCGTCAATGCCGGTTCGCTGGAA
AAGGACCTGCAGAAGAAATACGGCGAACCGACCCCGGAAGCCCTGCTCGAATCGGCCATGCGCCACGTCGAT
CATCTCGACAAGCTGGACTTCCAGAACTTCAAGGTCAGCGTCAAGGCCTCCGACGTCTTCATGGCCGTCGCC
GCCTATCGCCTGCTGGCCAGGCAGATCGAGCAGCCCCTGCACCTGGGCATCACCGAGGCCGGCGGCCTGCGC
TCCGGCACGGTGAAGTCGGCGGTGGGGCTGGGCATGCTCCTGGCCGAGGGAATCGGCGACACCATCCGGATT
TCCCTGGCTGCCGATCCGGTCGAGGAGATCAAGGTCGGTTTCGACATCCTCAAGTCCCTGCACCTGCGCTCC
CGTGGCATCAACTTCATCGCCTGCCCGAGCTGTTCGCGGCAGAACTTCGACGTGGTGAAGACCATGAACGAG
CTGGAAGGGCGCCTGGAGGACCTGCTGGTGCCGATGGACGTGGCCGTGATCGGTTGCGTCGTCAACGGTCCG
GGCGAAGCCAAGGAGGCCCATGTCGGCCTCACCGGCGGCACTCCGAACCTGGTGTATATCGACGGCAAGCCG
TCGCAGAAACTGACCAACGACAACCTGGTGGACGAGCTGGAACGGCTGATCCGCCAGAAGGCGGCCGAGAAG
GCCGAGGCCGATGCGAGCCTGATCGCCCGCGGCTGA
Translation:
MSIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAE
AFGKIKQQVNVPLVADIHFDYRIALRVAELGVDCLRINPGNIGREDRVKAVVDAARERNIPIRIGVNAGSLE
KDLQKKYGEPTPEALLESAMRHVDHLDKLDFQNFKVSVKASDVFMAVAAYRLLARQIEQPLHLGITEAGGLR
SGTVKSAVGLGMLLAEGIGDTIRISLAADPVEEIKVGFDILKSLHLRSRGINFIACPSCSRQNFDVVKTMNE
LEGRLEDLLVPMDVAVIGCVVNGPGEAKEAHVGLTGGTPNLVYIDGKPSQKLTNDNLVDELERLIRQKAAEK
AEADASLIARG*
AnnotationID:1813GeneID:1804
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:56
Gene Name:gcpE
Confidence Code:2
GeneProduct:putative isoprenoid biosynthetic protein
Cell Localization:()
Synonyms:ispG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Functional Category Confidence Code:5
COGs:pfam04551,COG0821
Secondary Functional Category(ies):
EC Number:1.17.4.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66478.1|AE016276_13 (AE016777) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
           [Pseudomonas putida KT2440]
          Length = 369

 Score =  667 bits (1721), Expect = 0.0
 Identities = 337/369 (91%), Positives = 359/369 (97%)

>gb|AAN81487.1|AE016764_169 (AE016764) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
           [Escherichia coli CFT073]
          Length = 372

 Score =  532 bits (1371), Expect = e-150
 Identities = 267/362 (73%), Positives = 313/362 (86%), Gaps = 1/362 (0%)

Structural Features:
pfam04551, GcpE, GcpE protein.
CD-Length = 352 residues,  82.1% aligned
Score =  453 bits (1168), Expect = 2e-128
Identities = 236/351 (67%), Positives = 284/351 (80%), Gaps = 1/351 (0%)

COG0821, GcpE, Enzyme involved in the deoxyxylulose pathway 
of isoprenoid biosynthesis 
[Lipid metabolism]
CD-Length = 361 residues,  82.3% aligned
Score =  439 bits (1131), Expect = 4e-124
Identities = 228/359 (63%), Positives = 282/359 (78%), Gaps = 2/359 (0%)
Genomic Context:
Comment:
ReferenceID:3611
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20758
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31754
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1804_cdd.html
URL:
ReferenceID:34279
Author/Investigator(s): Baker J, Franklin DB, Parker J.
Title: Sequence and characterization of the gcpE gene of Escherichia coli.
PubMed: 1521767
MedLine:
Source:
FEMS Microbiol Lett. 1992 Jul 1;73(1-2):175-80.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1521767
ReferenceID:34280
Author/Investigator(s): Campos N, Rodriguez-Concepcion M, Seemann M, Rohmer M, Boronat A.
Title: Identification of gcpE as a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis in Escherichia coli.
PubMed: 11163766
MedLine:
Source:
FEBS Lett. 2001 Jan 19;488(3):170-3.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11163766
Homologs By Global Alignment
Gene ID:1804

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3174 PA3803_tr translation of PA3803 371 99.99 99.99 0 1863.0
98595 gb|AAG07190.1|AE004798_13 (AE004798) probable isoprenoid biosynthetic protein GcpE [Pseudomonas aeruginosa PAO1] 371 99.99 99.99 0 1863.0
98596 gb|AAN66478.1|AE016276_13 (AE016777) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Pseudomonas putida KT2440] 371 90.83 96.76 2 1721.0
98597 gb|AAO54955.1| (AE016860) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Pseudomonas syringae pv. tomato str. DC3000] 371 88.40 95.41 2 1680.0
98609 gb|AAK04094.1| (AE006237) GcpE [Pasteurella multocida] 374 72.45 83.42 10 1357.0
GC ORFID: 44806How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3803Glimmer Score:
Start: 3690940Stop: 3689825
Length: 1116
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3803 translation of PA3803Homolog Bit Score 722.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4528 (ORF: BLASTX 651.0), t_PA3803 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCATTCATAGCGCTTCTCCGATCATTCGCCGCAAGTCTCGGAAAATCTGGGTCGGCAACGTCCCGGTG
GGCGGCGATGCGCCGATCGCCGTGCAGAGCATGACCAACACCGAGACCTGCGACGTCGCTGCCACCGTCGCG
CAGATCCGCCGCCTGGAAGATGCCGGTGCGGACATCGTGCGGGTTTCCGTCCCCGACATGGACGCCGCCGAG
GCGTTCGGCAAGATCAAGCAGCAGGTCAACGTGCCGCTGGTCGCCGACATCCACTTCGACTATCGCATCGCC
CTGCGCGTCGCCGAGCTGGGAGTGGACTGCCTGCGCATCAATCCGGGCAACATCGGTCGCGAGGACCGGGTC
AAGGCCGTGGTCGACGCCGCGCGCGAGCGCAACATCCCGATCCGTATCGGCGTCAATGCCGGTTCGCTGGAA
AAGGACCTGCAGAAGAAATACGGCGAACCGACCCCGGAAGCCCTGCTCGAATCGGCCATGCGCCACGTCGAT
CATCTCGACAAGCTGGACTTCCAGAACTTCAAGGTCAGCGTCAAGGCCTCCGACGTCTTCATGGCCGTCGCC
GCCTATCGCCTGCTGGCCAGGCAGATCGAGCAGCCCCTGCACCTGGGCATCACCGAGGCCGGCGGCCTGCGC
TCCGGCACGGTGAAGTCGGCGGTGGGGCTGGGCATGCTCCTGGCCGAGGGAATCGGCGACACCATCCGGATT
TCCCTGGCTGCCGATCCGGTCGAGGAGATCAAGGTCGGTTTCGACATCCTCAAGTCCCTGCACCTGCGCTCC
CGTGGCATCAACTTCATCGCCTGCCCGAGCTGTTCGCGGCAGAACTTCGACGTGGTGAAGACCATGAACGAG
CTGGAAGGGCGCCTGGAGGACCTGCTGGTGCCGATGGACGTGGCCGTGATCGGTTGCGTCGTCAACGGTCCG
GGCGAAGCCAAGGAGGCCCATGTCGGCCTCACCGGCGGCACTCCGAACCTGGTGTATATCGACGGCAAGCCG
TCGCAGAAACTGACCAACGACAACCTGGTGGACGAGCTGGAACGGCTGATCCGCCAGAAGGCGGCCGAGAAG
GCCGAGGCCGATGCGAGCCTGATCGCCCGCGGCTGA