ViewGene
Locus Name:
GeneID:
Location:

GeneID:1803
TrivialName: PA14_15820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15820
PAO1 Ortholog Locus:PA3758
Sequence Length:1092
Protein Length:363
Start: 1349836
Stop: 1348745
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07145.1|AE004794_10 (AE004794) probable N-acetylglucosamine-6-phosphate deacetylase [Pseudomonas aeruginosa PAO1]
Identities = 360/363 (99%), Positives = 361/363 (99%)
Sequence:
ATGCTCGAAGGCAACATCCTCACCCCGCAAGGCTGGATCCTCGGCCGCCTGCACATCCAGGACGGGCGTATC
CAGCGGATCGAAGGCGAGCCCTGCGATCCGGCCAGCAACGCCGATCCGTACCTGCTGCCAGGCTTCATCGAC
CTGCATGTGCACGGCGGCGGCGGCCGCGACATCATGGAAGGCGGCGACGCCTTCGCCACCATCGCCCGCACC
CACCGGCGCTTCGGCACGACCTCGCTGCTGGCCACCACCATGACTGCACCGCGCGAGGAGATCGCCGACATC
CTCAGCCAGCTCGGCGATTACTGCCGCCGCTCGCTGGAGGGCGGTTCACGGATACTCGGCGTGCACCTGGAA
GGCCCCTACATCAACTCCGGCAAGCTCGGCGCGCAGCCCAACTTCGCCCATGCCGCGGTGCTCGAGGAAGTC
GAGGACTACCTGCGCCGCGCGCCGATCCGGGTAATCACCATCGCCCCCGAGATCGCCGGACACCGGCCGCTG
ATCCGCGCCCTCGCCGAGCGCGGCGTACGCCTGCAGATCGGCCATACCCTGGGCAGCTACGAGGATGGCGTG
GCCGCACTGGAAGCCGGCGCCAGCAGCTTCACCCACCTCTACAACGCGATGACCGGCCTGCACCACCGCGAA
CCGGGTATCGTCGGCGCGGCCCTGGCCCACGCACGCTACGCCGAGCTGATCCCCGACCTGCTGCATGTCCAT
CCCGGCGCCATCAGGGTGGCCCTGCGTTCGATCCCGTGCCTGTACTGCGTGACCGACTCCACCGCCGCCGCC
GGCATGCCCGACGGCCAGTACAAGCTCGGCAGCCACACGGTGACCAAGTGCCTGGGCGGCGTGCGCCTGCCC
GACGGCACCCTGGCCGGCAGCACCCTGACCATGGACCAGGCGCTGCGCAACCTGGTGAAGATCGGCCTGCCC
CTGGCCGAAGCCTCGCAACGCCTTTCGCAATTCCCCGCCGATTACCTCGGCCTCGCCGAGCGCGGCCGCCTG
GCGCCCGCAGCCTGGGCCGATGTGGTGCGCCTGGATCGCTCCCTGGAACTCGACGCCGTGATGGTGGAAGGA
GAACTCGAATGA
Translation:
MLEGNILTPQGWILGRLHIQDGRIQRIEGEPCDPASNADPYLLPGFIDLHVHGGGGRDIMEGGDAFATIART
HRRFGTTSLLATTMTAPREEIADILSQLGDYCRRSLEGGSRILGVHLEGPYINSGKLGAQPNFAHAAVLEEV
EDYLRRAPIRVITIAPEIAGHRPLIRALAERGVRLQIGHTLGSYEDGVAALEAGASSFTHLYNAMTGLHHRE
PGIVGAALAHARYAELIPDLLHVHPGAIRVALRSIPCLYCVTDSTAAAGMPDGQYKLGSHTVTKCLGGVRLP
DGTLAGSTLTMDQALRNLVKIGLPLAEASQRLSQFPADYLGLAERGRLAPAAWADVVRLDRSLELDAVMVEG
ELE*
AnnotationID:1812GeneID:1803
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:38
Gene Name:
Confidence Code:3
GeneProduct:putative N-acetylglucosamine-6-phosphate deacetylase
Cell Localization:()
Synonyms:nagA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1820,KOG3892
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF12249.1|AE001862_75 (AE001862) N-acetylglucosamine-6-phosphate deacetylase [Deinococcus
           radiodurans]
          Length = 373

 Score =  244 bits (624), Expect = 5e-64
 Identities = 154/370 (41%), Positives = 212/370 (57%), Gaps = 17/370 (4%)

>dbj|BAB37438.1| (AP002564) N-acetylgalactosamine-6-phosphate deacetylase
           [Escherichia coli O157:H7]
          Length = 384

 Score =  221 bits (563), Expect = 5e-57
 Identities = 145/372 (38%), Positives = 198/372 (53%), Gaps = 22/372 (5%)








 
Structural Features:
COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase 
[Carbohydrate transport and metabolism]
CD-Length = 380 residues,  98.4% aligned
Score =  386 bits (993), Expect = 4e-108
Identities = 173/377 (45%), Positives = 234/377 (62%), Gaps = 18/377 (4%)

KOG3892, N-acetyl-glucosamine-6-phosphate deacetylase 
[Carbohydrate transport and metabolism]
CD-Length = 407 residues,  83.0% aligned
Score =  180 bits (457), Expect = 6e-46
Identities = 127/341 (37%), Positives = 180/341 (52%), Gaps = 23/341 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20756




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31800




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1803_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1803
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3173
                           PA3758_tr
                           translation of PA3758
                           363
                           99.17
                           99.44
                           0
                           1864.0
     

     
     
98588
                           gb|AAG07145.1|AE004794_10
                           (AE004794) probable N-acetylglucosamine-6-phosphate deacetylase [Pseudomonas aeruginosa PAO1]
                           363
                           99.17
                           99.44
                           0
                           1864.0
     

     
     
98589
                           gb|AAQ58232.1|
                           (AE016911) N-acetylglucosamine-6-phosphate deacetylase [Chromobacterium violaceum ATCC 12472]
                           377
                           67.63
                           76.12
                           18
                           1273.0
     

     
     
98590
                           gb|AAF12249.1|AE001862_75
                           (AE001862) N-acetylglucosamine-6-phosphate deacetylase [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           380
                           40.52
                           55.78
                           24
                           638.0
     

     
     
98593
                           gb|AAM35604.1|
                           (AE011701) N-acetylglucosamine-6-phosphate deacetylase [Xanthomonas axonopodis pv. citri str. 306]
                           410
                           36.58
                           52.19
                           73
                           547.0
     

     






      

          
GC ORFID: 44805How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3758Glimmer Score: 

          
Start: 3604101Stop: 3605192

          
Length: 1092


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3758 translation of PA3758Homolog Bit Score 722.0

          
Other Homologs:  t_PA3758 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGAAGGCAACATCCTCACCCCGCAAGGCTGGATCCTCGGCCGCCTGCACATCCAGGACGGGCGTATC 
CAGCGGATCGAAGGCGAGCCCTGCGATCCGGCCAGCAACGCCGATCCGTACCTGCTGCCAGGCTTCATCGAC 
CTGCATGTGCACGGCGGCGGCGGCCGCGACATCATGGAAGGCGGCGACGCCTTCGCCACCATCGCCCGCACC 
CACCGGCGCTTCGGCACGACCTCGCTGCTGGCCACCACCATGACTGCACCGCGCGAGGAGATCGCCGACATC 
CTCAGCCAGCTCGGCGATTACTGCCGCCGCTCGCTGGAGGGCGGTTCACGGATACTCGGCGTGCACCTGGAA 
GGCCCCTACATCAACTCCGGCAAGCTCGGCGCGCAGCCCAACTTCGCCCATGCCGCGGTGCTCGAGGAAGTC 
GAGGACTACCTGCGCCGCGCGCCGATCCGGGTAATCACCATCGCCCCCGAGATCGCCGGACACCGGCCGCTG 
ATCCGCGCCCTCGCCGAGCGCGGCGTACGCCTGCAGATCGGCCATACCCTGGGCAGCTACGAGGATGGCGTG 
GCCGCACTGGAAGCCGGCGCCAGCAGCTTCACCCACCTCTACAACGCGATGACCGGCCTGCACCACCGCGAA 
CCGGGTATCGTCGGCGCGGCCCTGGCCCACGCACGCTACGCCGAGCTGATCCCCGACCTGCTGCATGTCCAT 
CCCGGCGCCATCAGGGTGGCCCTGCGTTCGATCCCGTGCCTGTACTGCGTGACCGACTCCACCGCCGCCGCC 
GGCATGCCCGACGGCCAGTACAAGCTCGGCAGCCACACGGTGACCAAGTGCCTGGGCGGCGTGCGCCTGCCC 
GACGGCACCCTGGCCGGCAGCACCCTGACCATGGACCAGGCGCTGCGCAACCTGGTGAAGATCGGCCTGCCC 
CTGGCCGAAGCCTCGCAACGCCTTTCGCAATTCCCCGCCGATTACCTCGGCCTCGCCGAGCGCGGCCGCCTG 
GCGCCCGCAGCCTGGGCCGATGTGGTGCGCCTGGATCGCTCCCTGGAACTCGACGCCGTGATGGTGGAAGGA 
GAACTCGAATGA