ViewGene
Locus Name:
GeneID:
Location:

GeneID:1802
TrivialName: PA14_34820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34820
PAO1 Ortholog Locus:PA2304
Sequence Length:1089
Protein Length:362
Start: 3094663
Stop: 3095751
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05692.1|AE004656_4 (AE004656) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 355/362 (98%), Positives = 359/362 (99%)
Sequence:
ATGGAACGAACAGCTCCCAGTCTCACCGGTCGCGGCTTCGCCCGGCCGCGCAATCTCACCCCGCGCAGCAGC
GAGGCGCTGGTGCGGCGCCCGGCGGCGGAGCGCGACGGCCTGCCGCTGCTGATCGAGGCGCAGGCTCCCGGC
CTGTCCCTGGCCGACTGGATCCGCGAGCAGGGCCAGTCCCTGCACGACGACCTGAATCTGGCTGGCGGCCTG
TTGCTGAGAGGCTTCGAGGTCGACTCGGCAGAGCGCTTCCGCGCCGCCGCCGCCGCCTTCGCTCCGCAACTG
CTCGACTACAAGGAGCGTTCCTCGCCGCGCAGCCAGGTCAGCGGCGAGGTCTACACCTCCACCGAGCATCCG
CTGGACCAGCCGATCTTCCTGCATAACGAGCAGTCCTATACCGCCGACTGGCCGCTGTACATCATGTTCCAT
TGCCAGGTGGCGCCGCTCGAAGGCGGCGCCACCCCGGTGGCGGCCAACCGGTTGGTGCTCCGCCACCTGCCG
GACGAATTGCTGGAGCGCTTCGAGCGCCTGGGCATCCTCTACGTGCGCAACTACCGCGCCGGCCTCGGCCTG
TCCTGGCGCGAAGCGTTCCAGACCGACAGCCGCGCCGAGGTCGAGGCGTTCTGCGCTGAGCACCGGATCGCC
CATGCCTGGATCGGCGACGAGCACCTGCGCACCTGGCAGAGGCGCGCGGCGTTCCAGCGCCACCCGCATACC
GGCGAGCGCCTGTGGTTCAACCACGGCATGTTCTTCCATGCCAGCAGTCTCGAGCCGGGCCTGCGCGATGCG
CTGTTGCGCAGCGTCGCCGAGGAAGACCTGCCGTACCAGACCTACTACGGCGATGGCAGCCCGATCGAGGCG
CAGACCCTGGCGACCATCCGCAGCGCCATAGACCGCGAGACGCGGCGCTTCGACTGGCGCGTGGGCGACGTG
CTGATCCTCGACAACATGCTCGCCCAGCACGGCCGCGAGCCGTTCCGCGGGCCGCGCCGGATCCTCACCATC
ATGTCCACGCCGTATTCCAGCCTGGCCTCCGCCGACGTCCCGCCGACACCTTCGCGCCTGGCGCTCGGAGGT
GCTGCATGA
Translation:
MERTAPSLTGRGFARPRNLTPRSSEALVRRPAAERDGLPLLIEAQAPGLSLADWIREQGQSLHDDLNLAGGL
LLRGFEVDSAERFRAAAAAFAPQLLDYKERSSPRSQVSGEVYTSTEHPLDQPIFLHNEQSYTADWPLYIMFH
CQVAPLEGGATPVAANRLVLRHLPDELLERFERLGILYVRNYRAGLGLSWREAFQTDSRAEVEAFCAEHRIA
HAWIGDEHLRTWQRRAAFQRHPHTGERLWFNHGMFFHASSLEPGLRDALLRSVAEEDLPYQTYYGDGSPIEA
QTLATIRSAIDRETRRFDWRVGDVLILDNMLAQHGREPFRGPRRILTIMSTPYSSLASADVPPTPSRLALGG
AA*
AnnotationID:1811GeneID:1802
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:30
Gene Name:
Confidence Code:3
GeneProduct:putative regulatory protein
Cell Localization:()
Synonyms:PA2304
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN85494.1|AF484556_16 (AF484556) putative regulatory protein [Streptomyces atroolivaceus]
          Length = 330

 Score =  349 bits (896), Expect = 1e-95
 Identities = 174/332 (52%), Positives = 224/332 (67%), Gaps = 3/332 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
possible duplication of gene #1902.


















    ReferenceID:3607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20754




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32486




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1802_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1802
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3171
                           PA2304_tr
                           translation of PA2304
                           362
                           98.06
                           99.17
                           0
                           1864.0
     

     
     
98577
                           gb|AAG05692.1|AE004656_4
                           (AE004656) hypothetical protein PA2304 [Pseudomonas aeruginosa PAO1]
                           362
                           98.06
                           99.17
                           0
                           1864.0
     

     
     
98578
                           gb|AAN85494.1|AF484556_16
                           (AF484556) putative regulatory protein [Streptomyces atroolivaceus]
                           367
                           48.22
                           61.58
                           42
                           899.0
     

     
     
98580
                           gb|AAN85495.1|AF484556_17
                           (AF484556) putative regulatory protein [Streptomyces atroolivaceus]
                           363
                           43.52
                           55.64
                           29
                           729.0
     

     
     
3172
                           PA2303_tr
                           translation of PA2303
                           373
                           42.89
                           54.69
                           45
                           760.0
     

     






      

          
GC ORFID: 44804How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2304Glimmer Score: 

          
Start: 1859253Stop: 1858165

          
Length: 1089


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2304 translation of PA2304Homolog Bit Score 722.0

          
Other Homologs:  t_PA2303 (ORF: BLASTX 298.0), psyr_15may02_Scaffold1_revised_gene952 (ORF: BLASTX 276.0), t_PA2304 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACGAACAGCTCCCAGTCTCACCGGTCGCGGCTTCGCCCGGCCGCGCAATCTCACCCCGCGCAGCAGC 
GAGGCGCTGGTGCGGCGCCCGGCGGCGGAGCGCGACGGCCTGCCGCTGCTGATCGAGGCGCAGGCTCCCGGC 
CTGTCCCTGGCCGACTGGATCCGCGAGCAGGGCCAGTCCCTGCACGACGACCTGAATCTGGCTGGCGGCCTG 
TTGCTGAGAGGCTTCGAGGTCGACTCGGCAGAGCGCTTCCGCGCCGCCGCCGCCGCCTTCGCTCCGCAACTG 
CTCGACTACAAGGAGCGTTCCTCGCCGCGCAGCCAGGTCAGCGGCGAGGTCTACACCTCCACCGAGCATCCG 
CTGGACCAGCCGATCTTCCTGCATAACGAGCAGTCCTATACCGCCGACTGGCCGCTGTACATCATGTTCCAT 
TGCCAGGTGGCGCCGCTCGAAGGCGGCGCCACCCCGGTGGCGGCCAACCGGTTGGTGCTCCGCCACCTGCCG 
GACGAATTGCTGGAGCGCTTCGAGCGCCTGGGCATCCTCTACGTGCGCAACTACCGCGCCGGCCTCGGCCTG 
TCCTGGCGCGAAGCGTTCCAGACCGACAGCCGCGCCGAGGTCGAGGCGTTCTGCGCTGAGCACCGGATCGCC 
CATGCCTGGATCGGCGACGAGCACCTGCGCACCTGGCAGAGGCGCGCGGCGTTCCAGCGCCACCCGCATACC 
GGCGAGCGCCTGTGGTTCAACCACGGCATGTTCTTCCATGCCAGCAGTCTCGAGCCGGGCCTGCGCGATGCG 
CTGTTGCGCAGCGTCGCCGAGGAAGACCTGCCGTACCAGACCTACTACGGCGATGGCAGCCCGATCGAGGCG 
CAGACCCTGGCGACCATCCGCAGCGCCATAGACCGCGAGACGCGGCGCTTCGACTGGCGCGTGGGCGACGTG 
CTGATCCTCGACAACATGCTCGCCCAGCACGGCCGCGAGCCGTTCCGCGGGCCGCGCCGGATCCTCACCATC 
ATGTCCACGCCGTATTCCAGCCTGGCCTCCGCCGACGTCCCGCCGACACCTTCGCGCCTGGCGCTCGGAGGT 
GCTGCATGA