ViewGene
Locus Name:
GeneID:
Location:

GeneID:180
TrivialName: PA14_39820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39820
PAO1 Ortholog Locus:PA1910
Sequence Length:2415
Protein Length:804
Start: 3548064
Stop: 3550478
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05298.1|AE004617_2 (AE004617) probable tonB-dependent receptor protein [Pseudomonas aeruginosa PAO1]
Identities = 801/804 (99%), Positives = 802/804 (99%)
Sequence:
ATGCCCGTACGCACGCTTCGCCCCCGTTCGCTGTCCCTGGCCATCCACGCCGCCGCCATGACCCTCGCCCTC
GCCGGAGCGGCCCCCGCCCTGCTTGCCGCCGAGGCGCCCGCCGCCAGCTCGGCGCGCAGCTATGACATCGCC
CCCGGCCCGCTCGGTCGCACCCTGTCGGCCTTCGCCAGCGACAACGGGGTATCCCTGGCGTTCGACCCGGCG
CTCACCGAGGGTCGCCGCAGCGCCGCCCTGCGCGGCCGCTACGCGCCGGTCGAGGCGCTGCACCGCCTGCTG
CTGGGCAGCGGCCTGGAGTTGCAGCAGCGCAGCGACGGCAGCTACACCCTGGTGCCGGCAACCACCGATGGC
GCGCTGGAACTGCAATCCTCGCTGATCACCGCCCAGGCCGCCGGTGCCGAGACCCTGCCCGCCGAGTACGCC
GGCGGCCAGGTGGCCCGTGGCGCGCGCCTGGGCATGTTGGGCAACGCCGACGTGATGGACGCGCCATTCAGC
ATCACCAGCTACACCGCCAGGACCATCGAGCAGCAGCAGGCGCGCAGCGTCGCCGACCTGCTACAGGCCAAC
GATCCGTCGGTGCGGGTGGTCGGCGGGCGCGGCGACCTGGTGGACAGCTACACGATTCGCGGCTTCAGCGTG
CAGAACGCCGACGTCGCCTTCAACGGCCTCTATGGCCTGCTGCCGTTCTGGCGGGTACCGATCGAATTCGCC
GAGCGCGTGGAAGTGCTCAAGGGACCGAACGCCCTGCTCGGCGGGATTTCCCCCGGCGGCAGCGTCGGCGGC
ACCATCAACCTGGTGCCCAAGCGCGCCGACGACCAGCCGCTGACCCGCGTCAGCGTCGACTGGACCCAGCGC
GGCCAGCTCGGCACTCACCTCGACATCGGCCGACGCTTTGGCGAGAACAACGCCTTCGGCGTGCGCTTCAAC
GGCGTCTACCGCAACGGCGATACCGCCGTCGACCATCAGAGCCGCGAGTTTCCCATGCTCTCCCTGGGCCTG
GACTTCCGTGGCGAGCGCCTGCGCCTGTCCAGCGACCTGCTGTACCAGAAGGAAAGCCTGGAAGGCGTGGTG
CGCCCGCTGCTGACCGGCCCGGGAACCACCCACATCCCCCACGCCCCGGACTCGAAGACACGCTTCGGCCTG
CGCGATTCCTACCTGGACCAGGAGGACTACTCCATGGTCAACCGCGGCGAGTACGACCTCGCCGACAACCTG
ACGGCGTTCGCCAGCATCGGCGGCCGCCAGAGCAACTACGAAACCATCGCCGCCAACAGCATCCTCATCGGC
AACCAGGGCGATATCGTCAACAGCCTGGCACGCCAGCGCGGCGACCGCCGCACCTATTCCGCCGAGGTCGGC
CTGCGCGGCAACTTCGACACCGGCCCGCTCCGCCACGACTGGACGCTCAGCGCCAACCGCCTGCACGAACGG
CTGGGCATGGTCTATGCCTTCACCGGGATGCAGCCGGGCAACCTCTACCAGACCTCGCCGCATACGCCGCTG
CCGGACTTCTCCAGCCTCGACGGGAGCATTCCGAAGACCAATGAAACCGACCTCGGCGGCGTGGCGCTGGCC
GACAGGCTGTCGTTCCTCGAGGATCGCGTGCAGGTCACCCTGGGCGTGCGCCGCCAGCAGATCGAGTCGCGC
AACTACGACCAGACCAGCGGCGCGCGCACCAGCCACGACAAGCGGCACGTGTGGACGCCGATGGCCAGCGTG
CTGGTCAAGCCGCTGCAGGACCTGTCGCTGTACGCCAACTACATCCAGGGCCTCAGCCAGGGCGAGGCGGCG
CCGATGACCGCGGCCAACGCCGGCCAGGTGCTGGCACCGTACAAGGCCGAGCAATACGAGATCGGCGCCAAG
TACGACCTGGGCGGCTTCACCACCACCCTGGCGCTGTTCGAGATCAGGAAACCGAACGCCTATACCGACGCC
AGCAACGTCTTCCGCGCCGACGGCGAGCAACGCAACCGCGGCGTGGAGCTGAGCCTCTATGGCGAACCGCTG
GACGGCGTGCGGGTGATGGCCGGCGCCACCTACATCAAGCCCGAGCAGAACAAGACCGGCGACCCTGCCAGC
GAAGGCAAGGACGCGCCCGGCGTGGCCCGCCGCCAGGCCAACCTGGGGGTCAGTTGGGACACCCCATTCGTC
GACGGACTGACCCTCGACAGCCGCTGGATCTACACCGGCTCGGCCTACGTGGACAGCGCCAACGCCCTCGCC
GTGCCGCACTGGAACCGCGTCGACCTCGGCGCCGCCTACGCCTTCCAGGTCGCCGGCAAGCCGCTGGTGGCG
CGCGCCAACCTGGAGAACGCGCTGGGCAAGGACTACTGGACCGCAGCCAACGGCTACCTGTCGATCAGCTCG
CCGCGCACCCTTTCCCTTTCCCTCACGGCGGACTTCTGA
Translation:
MPVRTLRPRSLSLAIHAAAMTLALAGAAPALLAAEAPAASSARSYDIAPGPLGRTLSAFASDNGVSLAFDPA
LTEGRRSAALRGRYAPVEALHRLLLGSGLELQQRSDGSYTLVPATTDGALELQSSLITAQAAGAETLPAEYA
GGQVARGARLGMLGNADVMDAPFSITSYTARTIEQQQARSVADLLQANDPSVRVVGGRGDLVDSYTIRGFSV
QNADVAFNGLYGLLPFWRVPIEFAERVEVLKGPNALLGGISPGGSVGGTINLVPKRADDQPLTRVSVDWTQR
GQLGTHLDIGRRFGENNAFGVRFNGVYRNGDTAVDHQSREFPMLSLGLDFRGERLRLSSDLLYQKESLEGVV
RPLLTGPGTTHIPHAPDSKTRFGLRDSYLDQEDYSMVNRGEYDLADNLTAFASIGGRQSNYETIAANSILIG
NQGDIVNSLARQRGDRRTYSAEVGLRGNFDTGPLRHDWTLSANRLHERLGMVYAFTGMQPGNLYQTSPHTPL
PDFSSLDGSIPKTNETDLGGVALADRLSFLEDRVQVTLGVRRQQIESRNYDQTSGARTSHDKRHVWTPMASV
LVKPLQDLSLYANYIQGLSQGEAAPMTAANAGQVLAPYKAEQYEIGAKYDLGGFTTTLALFEIRKPNAYTDA
SNVFRADGEQRNRGVELSLYGEPLDGVRVMAGATYIKPEQNKTGDPASEGKDAPGVARRQANLGVSWDTPFV
DGLTLDSRWIYTGSAYVDSANALAVPHWNRVDLGAAYAFQVAGKPLVARANLENALGKDYWTAANGYLSISS
PRTLSLSLTADF*
AnnotationID:190GeneID:180
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 10:10:26
Gene Name:
Confidence Code:3
GeneProduct:putative tonB-dependent receptor protein
Cell Localization:(7) Outer membrane-associated
Synonyms:ufrA
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative unidentified ferric siderophore receptor
Functional Category Confidence Code:5
COGs:cd01347,pfam00593,COG1629
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD86345.1| (BX321864) TonB-dependent receptor protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 823

 Score =  605 bits (1561), Expect = e-172
 Identities = 344/798 (43%), Positives = 478/798 (59%), Gaps = 18/798 (2%)

>gb|AAN69176.1|AE016551_7 (AE016787) outer membrane ferric siderophore receptor [Pseudomonas
           putida KT2440]
          Length = 801

 Score =  575 bits (1483), Expect = e-163
 Identities = 343/816 (42%), Positives = 478/816 (58%), Gaps = 32/816 (3%)






 
Structural Features:
cd01347, ligand_gated_channel
CD-Length = 672 residues, 100.0% aligned
Score =  347 bits (890), Expect = 4e-96

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  313 bits (801), Expect = 8e-86
Identities = 204/723 (28%), Positives = 296/723 (40%), Gaps = 92/723 (12%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues, 100.0% aligned
Score =  154 bits (389), Expect = 3e-38
Identities = 168/775 (21%), Positives = 255/775 (32%), Gaps = 73/775 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37039




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:180_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:180
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
317
                           PA1910_tr
                           translation of PA1910
                           804
                           99.62
                           99.75
                           0
                           4105.0
     

     
     
20861
                           gb|AAG05298.1|AE004617_2
                           (AE004617) probable tonB-dependent receptor protein [Pseudomonas aeruginosa PAO1]
                           804
                           99.62
                           99.75
                           0
                           4105.0
     

     
     
20862
                           gb|AAA76602.1|
                           (U33150) unidentified ferric siderophore receptor [Pseudomonas aeruginosa]
                           804
                           99.50
                           99.62
                           0
                           4096.0
     

     
     
20863
                           emb|CAD86345.1|
                           (BX321864) TonB-dependent receptor protein [Nitrosomonas europaea ATCC 19718]
                           837
                           42.41
                           58.66
                           47
                           1597.0
     

     
     
20864
                           gb|AAN69176.1|AE016551_7
                           (AE016787) outer membrane ferric siderophore receptor [Pseudomonas putida KT2440]
                           822
                           42.21
                           58.63
                           39
                           1525.0
     

     






      

          
GC ORFID: 43182How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1910Glimmer Score: 

          
Start: 1405847Stop: 1403433

          
Length: 2415


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1910 translation of PA1910Homolog Bit Score 1585.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1459 (ORF: BLASTX 258.0), t_PA1910 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGTACGCACGCTTCGCCCCCGTTCGCTGTCCCTGGCCATCCACGCCGCCGCCATGACCCTCGCCCTC 
GCCGGAGCGGCCCCCGCCCTGCTTGCCGCCGAGGCGCCCGCCGCCAGCTCGGCGCGCAGCTATGACATCGCC 
CCCGGCCCGCTCGGTCGCACCCTGTCGGCCTTCGCCAGCGACAACGGGGTATCCCTGGCGTTCGACCCGGCG 
CTCACCGAGGGTCGCCGCAGCGCCGCCCTGCGCGGCCGCTACGCGCCGGTCGAGGCGCTGCACCGCCTGCTG 
CTGGGCAGCGGCCTGGAGTTGCAGCAGCGCAGCGACGGCAGCTACACCCTGGTGCCGGCAACCACCGATGGC 
GCGCTGGAACTGCAATCCTCGCTGATCACCGCCCAGGCCGCCGGTGCCGAGACCCTGCCCGCCGAGTACGCC 
GGCGGCCAGGTGGCCCGTGGCGCGCGCCTGGGCATGTTGGGCAACGCCGACGTGATGGACGCGCCATTCAGC 
ATCACCAGCTACACCGCCAGGACCATCGAGCAGCAGCAGGCGCGCAGCGTCGCCGACCTGCTACAGGCCAAC 
GATCCGTCGGTGCGGGTGGTCGGCGGGCGCGGCGACCTGGTGGACAGCTACACGATTCGCGGCTTCAGCGTG 
CAGAACGCCGACGTCGCCTTCAACGGCCTCTATGGCCTGCTGCCGTTCTGGCGGGTACCGATCGAATTCGCC 
GAGCGCGTGGAAGTGCTCAAGGGACCGAACGCCCTGCTCGGCGGGATTTCCCCCGGCGGCAGCGTCGGCGGC 
ACCATCAACCTGGTGCCCAAGCGCGCCGACGACCAGCCGCTGACCCGCGTCAGCGTCGACTGGACCCAGCGC 
GGCCAGCTCGGCACTCACCTCGACATCGGCCGACGCTTTGGCGAGAACAACGCCTTCGGCGTGCGCTTCAAC 
GGCGTCTACCGCAACGGCGATACCGCCGTCGACCATCAGAGCCGCGAGTTTCCCATGCTCTCCCTGGGCCTG 
GACTTCCGTGGCGAGCGCCTGCGCCTGTCCAGCGACCTGCTGTACCAGAAGGAAAGCCTGGAAGGCGTGGTG 
CGCCCGCTGCTGACCGGCCCGGGAACCACCCACATCCCCCACGCCCCGGACTCGAAGACACGCTTCGGCCTG 
CGCGATTCCTACCTGGACCAGGAGGACTACTCCATGGTCAACCGCGGCGAGTACGACCTCGCCGACAACCTG 
ACGGCGTTCGCCAGCATCGGCGGCCGCCAGAGCAACTACGAAACCATCGCCGCCAACAGCATCCTCATCGGC 
AACCAGGGCGATATCGTCAACAGCCTGGCACGCCAGCGCGGCGACCGCCGCACCTATTCCGCCGAGGTCGGC 
CTGCGCGGCAACTTCGACACCGGCCCGCTCCGCCACGACTGGACGCTCAGCGCCAACCGCCTGCACGAACGG 
CTGGGCATGGTCTATGCCTTCACCGGGATGCAGCCGGGCAACCTCTACCAGACCTCGCCGCATACGCCGCTG 
CCGGACTTCTCCAGCCTCGACGGGAGCATTCCGAAGACCAATGAAACCGACCTCGGCGGCGTGGCGCTGGCC 
GACAGGCTGTCGTTCCTCGAGGATCGCGTGCAGGTCACCCTGGGCGTGCGCCGCCAGCAGATCGAGTCGCGC 
AACTACGACCAGACCAGCGGCGCGCGCACCAGCCACGACAAGCGGCACGTGTGGACGCCGATGGCCAGCGTG 
CTGGTCAAGCCGCTGCAGGACCTGTCGCTGTACGCCAACTACATCCAGGGCCTCAGCCAGGGCGAGGCGGCG 
CCGATGACCGCGGCCAACGCCGGCCAGGTGCTGGCACCGTACAAGGCCGAGCAATACGAGATCGGCGCCAAG 
TACGACCTGGGCGGCTTCACCACCACCCTGGCGCTGTTCGAGATCAGGAAACCGAACGCCTATACCGACGCC 
AGCAACGTCTTCCGCGCCGACGGCGAGCAACGCAACCGCGGCGTGGAGCTGAGCCTCTATGGCGAACCGCTG 
GACGGCGTGCGGGTGATGGCCGGCGCCACCTACATCAAGCCCGAGCAGAACAAGACCGGCGACCCTGCCAGC 
GAAGGCAAGGACGCGCCCGGCGTGGCCCGCCGCCAGGCCAACCTGGGGGTCAGTTGGGACACCCCATTCGTC 
GACGGACTGACCCTCGACAGCCGCTGGATCTACACCGGCTCGGCCTACGTGGACAGCGCCAACGCCCTCGCC 
GTGCCGCACTGGAACCGCGTCGACCTCGGCGCCGCCTACGCCTTCCAGGTCGCCGGCAAGCCGCTGGTGGCG 
CGCGCCAACCTGGAGAACGCGCTGGGCAAGGACTACTGGACCGCAGCCAACGGCTACCTGTCGATCAGCTCG 
CCGCGCACCCTTTCCCTTTCCCTCACGGCGGACTTCTGA