ViewGene

Locus Name:
GeneID:
Location:

GeneID: 18

TrivialName: PA14_29400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_29400

PAO1 Ortholog Locus: PA2684

Sequence Length: 3954

Protein Length: 1317

Start: 2546202

Stop: 2550155

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06072.1|AE004696_6 (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 1314/1317 (99%), Positives = 1316/1317 (99%)

Sequence:

ATGAGCGGCCTACCGGTTTCCCATGTCGGCGAGAAAGTCTCGGGAGGGGTTATCTCCACCGGCTCGCCCACC
GTGCACGTCGGCAGCAGCGCGGTCGGCCTGGCCGACCGGGTGTCCGCCTGCGTGCCGTTGGTGGGCAAGCCG
GTCAACCCGATGCTCGGCAGCAAGCTGCTGCCGGAAGAGGTCGATTTCGCCCTGGCGGCGCCGGACACCTTC
ACCTTCGCCCGTGGCTACCTGTCGAGCAACCCCCGTATCGGCCGGCTCGGCCGGGGCTGGTGGCTGCCGGGC
GAGAGCATGCACCTGGAACTGAGCGAAGACGCCTGCGTGCTGGTCGACGCCCAGGGCCGCCGGATCGGCTTT
CCTGCGCTGGCTCCCGGCGCCCAGCATTATTCCGGCAGCGAGGAGCTGTGGCTGCGCCGCGGCGGTTCGAGC
GGCGGCGAAGCGCAGGCCTGGCGCGGGCGCTGGGCGGCGGTGCCGGCCGAACTGCAGACGCAGGAGGGCTCC
GTGCTGGTGCTGTCCGGCCACAGCTACCTGCATTTCCAGCGTTGCCCCGACGGTATCTGGCGCCTGCAGGCC
AGCTTCGGCCGCGCCGGCTACCGCACCGAGTTCCGCTGGAGCGGACGTGGCCTGCTCACCGGCGTGCGCGAC
AGCGCCGGGCGCAGCTATGCGCTGGTCTACCAGCAAGCCTGCGAGCCGAGCGAGGGCGACGACGGCCTGCGT
CTGTTCGGCGTGATCCTGGCCAGCCACGACGGACCGCCTCCGGACTACATCGATCCGCAGAGCCCGGGGCTC
GACTGGCTGGTGCGCTACCAGTTCAGCGACAGCGGCGATCTGATCGCCGTGCGCGACCGTCTTGGCCAGGTG
GTCCGGGTATTCGCCTGGCGCGAGCACATGCTGGTCGCCCACGGCGAACCGGGCGGGCTGGAGGTTCGCTAC
GAGTGGGATGTCCATGCTCCGCACGGGCGGGTCGTGAAGCAGATCGAGGCGGGCGGCCTGACCCGTACCTTC
CGCTACCTGCGCGATGCCACCGAGGTCAGCGACAGCCTCGGCCGCGTCGAACGCTACGAGTTCGCCGGCGAG
GGCGGGCAGCGGCGCTGGACCGCGCTGGTCAGGGCCGACGGCAGCCGTAGCGAGTTCGACTACGACCTGTTC
GGCCGCCTGGTCGCCATGCGCGATCCGCTGGGACGGGAGACGCGGCGCCGGCGCGATGGCCAGGGGCGGATG
CTCGAGGAGGAGTCGCCGGGCAAGGCGCGCTATCGCAAGCGCGTCGACGAAGAGACCGGGCTGCTGGTCGAG
CTGGAGGACGCGATGCAGCGCCGCTGGACCTTCGAGCGCGACGAACGGGGCAATGCGACGACGGTGCGCGGC
CCGGCCGGCAGCACCCGCTACGCCTACGAAGACCCGCGCCTGCCCGACCGGCCGACGCGAATCGTCGACCCG
CGCGGCGGCGAGCGGCGCCTGGAGTGGAACCGCTTCGGCCTGTTGGCCGCGTTGACCGATTGTTCCGGCCAG
GTCTGGCGTTACGACTACGACAACGAAGGACGTTTGGTCGCCAGCAGCGACCCGCTGGGACAACTGACCCGG
CGCCGCTACGACCCGCTGGGGCAACTGATCGGCCTGGAATTGGCCGACGGCAGCGCCCTGAGCTATGAATAC
GACGCCCTTGGGCGGCAGATCCGTATCGCCGATGCCAAGGGGCACGCCACGCTGTTTTCCTGGGGGCACGGC
GATCTGCTGGCGCGGGTTTCCGACGCCGGCGGCGGCGAATTGTCCTACCTGCACGACGAAGCCGGCAGGCTG
GTCGCCCTGACCAACGAGAACGGCGTCCAGGCGCAGTTCCGCTACGACCTGCTGGACCGTCTGGTGGAAGAG
ACCGGCTTCGACGGTCGTCGCCAACGCTATCGCTACAACGCCGCTGACGAACTGATCGCCCGCGAGGATGCC
GACGGTCGCGAGACCACCTATGCCTACGACCGCGACGGCCGCCTGGCGAGCATCCGGGTTCCCGCCACCGAG
CACGCACCGGCCCTGGTCGAGCGTTACCGCTGGTTGGCCGACGGCCGCCTGGCCAGCGCCGGCGGGGCGGAT
TGCGAGGTGCGCTACACGTACGACGAGGTCGGTAACCTGCGCCTGGAAAGCCAGGTACATGCCGACGGTTGG
GTCTACAGCGTCGAGCACAGCCACGACGCGCTAGGCGTGCGCCAGACCAGCCGCTACGGCGACGCGCCGCCG
GTCGCCTGGCTGACCTATGGCCCGGGTCATCTGCACGGCGCGCTGGTCGGTGCGGTCGAGCTGGCCTTCGAG
CGCGATGCCCTGCACCGCGAGGTGCGTCGCGACGCCCGCCGCGACGGGCAGGATGACGCGTTGTTCACCCAG
GAGCGCCAGCACGCGCCGCTGGGACGCCTGCAGCGCAGCCGCCTGCGTCTGGCCGGCGGTTTCGACTGGCAG
CGCGGCTATCGCTACGACGGACTTGGACAACTGGTCGGCATCGACGACAACCAGTATCCGTCGGTGCGCTAC
GAATACGACCTCGGCGGTCGCCTGCTGGCCAGCCGGCGCGCTGGCGCGGCGGCCAGCACCTACCGCTACGAC
GCCGCCGGCAACCGCCTGGAGGGCGTCGGCGAGTACGCGCGCGAGGACGCTCGCCAGGCATTCGCCGAGAAC
GAACTGTACCGCTCCGGTTTCAGTCGCTCCGAGACGCGCGCGAGCCAGGCCGGCGAAGGCCCGGCGCGCTGG
GCCGGCAACCGCGTGGAGAGGATCGCCGGCAACCGCTATCGCTTCGATGCGCTGGGCAACCTGGTCGAGCGT
ATCGGCGCCGACGGCGAGCGCCTGCGCCTGGCCTACGACGGCGCGCAGCGCCTGGTCCATCTGACGCGCGAT
TACGCCGACGGCACGCGGCTGGAGGCGCGCTACCGCTACGACGCGCTGTCGCGACGGATCGCCAAGGTGGTG
CTGCGCGACGGTGTCGAGCAGCAGGTGCGCTTCGGCTGGGACGGCGATCGCCAATGCGCCGAAGCCTTTGCG
CGGGAACTGCGCACCACCGTTCACGAACCGGGCGGTTTCGTCCCGTTGCTGCGCCTGGAGCAGGCCTGCGAG
CCCGATCCCCCGGAGCTGCTGCAACTGCGCCAGGCGTTCGCCGCCGAAGGCCAGCCGCTGCCGGCGCAATGC
GTGCCGGCGCTGGGCGAGGCGCGGATCGCTTTCTTCCACACCGATCACCTCGGTACCCCCCTGCAGCTGAGC
GACGAACGTGGCCAACTGCGTTGGCAGGGCGTTCCGGACGACTGGCGGGCGGTAGCGCCGGAACGACAGCCG
GGTGCGCAGCCGATCCGCTTCCAGGGGCAGTACCACGATGAGGAAAGCGGCCTCTACTACAACCGCTACCGT
TACTACCTGCCGGAAGCCGGGCGCTATGCCAGCCAGGACCCGCTCGGCCTGGGCGGTGGCCCCAACCCCTAT
GCCTACGCGCTGAACGCGCCCACGCTGGCCTACGATCCCACCGGCCTGATCATCCCGCTGGTGGTGATCGGC
GCCTTCGCCGCCCGCGCCGCGATCGGAGCGGCGCTGGGCGCCGGCATCGAGCTGGGGATGCAAACCGGCAAG
CAGGTGCTGGGGCAGATGAAGGACAACTGGGACAGCGATCGCGACCTCACCGATATCAAGTGGAAGTGCATC
GACATCAACTGGAAACACGTCGGCGCCTCGGCGGCCATCGGCACCGTGGCGCCGGGCATGCTCAGCACCGGC
AAGACCGTGGTGCAGTCCGCCAAGGCGATCAGGACCCTTTCCGGACAGGCGGCCAACACCGCCAACCGCGCG
GCCAAGCTGGCCGCGCGCAAGGCCGCCCATGCCGATACCATCAAGAAGGCCGTGGCCACCCAGGCCGCCTGG
CAGACGGGCAAGCAGATCGTCAAATGCCCGCTGAAGGACGAAGAAGAGGAGTGCCCGCCGCAATGA

Translation:

MSGLPVSHVGEKVSGGVISTGSPTVHVGSSAVGLADRVSACVPLVGKPVNPMLGSKLLPEEVDFALAAPDTF
TFARGYLSSNPRIGRLGRGWWLPGESMHLELSEDACVLVDAQGRRIGFPALAPGAQHYSGSEELWLRRGGSS
GGEAQAWRGRWAAVPAELQTQEGSVLVLSGHSYLHFQRCPDGIWRLQASFGRAGYRTEFRWSGRGLLTGVRD
SAGRSYALVYQQACEPSEGDDGLRLFGVILASHDGPPPDYIDPQSPGLDWLVRYQFSDSGDLIAVRDRLGQV
VRVFAWREHMLVAHGEPGGLEVRYEWDVHAPHGRVVKQIEAGGLTRTFRYLRDATEVSDSLGRVERYEFAGE
GGQRRWTALVRADGSRSEFDYDLFGRLVAMRDPLGRETRRRRDGQGRMLEEESPGKARYRKRVDEETGLLVE
LEDAMQRRWTFERDERGNATTVRGPAGSTRYAYEDPRLPDRPTRIVDPRGGERRLEWNRFGLLAALTDCSGQ
VWRYDYDNEGRLVASSDPLGQLTRRRYDPLGQLIGLELADGSALSYEYDALGRQIRIADAKGHATLFSWGHG
DLLARVSDAGGGELSYLHDEAGRLVALTNENGVQAQFRYDLLDRLVEETGFDGRRQRYRYNAADELIAREDA
DGRETTYAYDRDGRLASIRVPATEHAPALVERYRWLADGRLASAGGADCEVRYTYDEVGNLRLESQVHADGW
VYSVEHSHDALGVRQTSRYGDAPPVAWLTYGPGHLHGALVGAVELAFERDALHREVRRDARRDGQDDALFTQ
ERQHAPLGRLQRSRLRLAGGFDWQRGYRYDGLGQLVGIDDNQYPSVRYEYDLGGRLLASRRAGAAASTYRYD
AAGNRLEGVGEYAREDARQAFAENELYRSGFSRSETRASQAGEGPARWAGNRVERIAGNRYRFDALGNLVER
IGADGERLRLAYDGAQRLVHLTRDYADGTRLEARYRYDALSRRIAKVVLRDGVEQQVRFGWDGDRQCAEAFA
RELRTTVHEPGGFVPLLRLEQACEPDPPELLQLRQAFAAEGQPLPAQCVPALGEARIAFFHTDHLGTPLQLS
DERGQLRWQGVPDDWRAVAPERQPGAQPIRFQGQYHDEESGLYYNRYRYYLPEAGRYASQDPLGLGGGPNPY
AYALNAPTLAYDPTGLIIPLVVIGAFAARAAIGAALGAGIELGMQTGKQVLGQMKDNWDSDRDLTDIKWKCI
DINWKHVGASAAIGTVAPGMLSTGKTVVQSAKAIRTLSGQAANTANRAAKLAARKAAHADTIKKAVATQAAW
QTGKQIVKCPLKDEEEECPPQ*

AnnotationID:28 GeneID:18

AnnotatorUID: danlee

Modification Date/Time: 2006-02-02 13:01:33

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2684, rhs

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3209

Secondary Functional Category(ies): cell envelope biogenesis, outer membrane

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
CD-Length = 796 residues,  99.6% aligned
Score =  274 bits (701), Expect = 5e-74
Identities = 191/839 (22%), Positives = 266/839 (31%), Gaps = 68/839 (8%)

Genomic Context:

Comment:

ReferenceID:39

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17181

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36340

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 18_cdd.html

URL:

Homologs By Global Alignment

Gene ID:18

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

39 PA2684_tr translation of PA2684 1317 99.77 99.92 0 6941.0

9183 gb|AAG06072.1|AE004696_6 (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 1317 99.77 99.92 0 6941.0

9186 gb|AAG58739.1|AE005586_4 (AE005586) orf, hypothetical protein [Escherichia coli O157:H7 EDL933] 1408 6.67 8.59 1187 241.0

9184 gb|AAB18572.1| (U00039) alternate gene name yibJ [Escherichia coli] 1349 5.85 8.00 1148 243.0

9185 gb|AAC76619.1| (AE000437) orf, hypothetical protein [Escherichia coli K12] 1349 5.85 8.00 1148 244.0

GC ORFID: `43020`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2684`	Glimmer Score:
Start: `2407724`	Stop: `2403771`
Length: `3954`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2684 translation of PA2684`	Homolog Bit Score `2678.0`
Other Homologs: `t_PA2684 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGGCCTACCGGTTTCCCATGTCGGCGAGAAAGTCTCGGGAGGGGTTATCTCCACCGGCTCGCCCACC GTGCACGTCGGCAGCAGCGCGGTCGGCCTGGCCGACCGGGTGTCCGCCTGCGTGCCGTTGGTGGGCAAGCCG GTCAACCCGATGCTCGGCAGCAAGCTGCTGCCGGAAGAGGTCGATTTCGCCCTGGCGGCGCCGGACACCTTC ACCTTCGCCCGTGGCTACCTGTCGAGCAACCCCCGTATCGGCCGGCTCGGCCGGGGCTGGTGGCTGCCGGGC GAGAGCATGCACCTGGAACTGAGCGAAGACGCCTGCGTGCTGGTCGACGCCCAGGGCCGCCGGATCGGCTTT CCTGCGCTGGCTCCCGGCGCCCAGCATTATTCCGGCAGCGAGGAGCTGTGGCTGCGCCGCGGCGGTTCGAGC GGCGGCGAAGCGCAGGCCTGGCGCGGGCGCTGGGCGGCGGTGCCGGCCGAACTGCAGACGCAGGAGGGCTCC GTGCTGGTGCTGTCCGGCCACAGCTACCTGCATTTCCAGCGTTGCCCCGACGGTATCTGGCGCCTGCAGGCC AGCTTCGGCCGCGCCGGCTACCGCACCGAGTTCCGCTGGAGCGGACGTGGCCTGCTCACCGGCGTGCGCGAC AGCGCCGGGCGCAGCTATGCGCTGGTCTACCAGCAAGCCTGCGAGCCGAGCGAGGGCGACGACGGCCTGCGT CTGTTCGGCGTGATCCTGGCCAGCCACGACGGACCGCCTCCGGACTACATCGATCCGCAGAGCCCGGGGCTC GACTGGCTGGTGCGCTACCAGTTCAGCGACAGCGGCGATCTGATCGCCGTGCGCGACCGTCTTGGCCAGGTG GTCCGGGTATTCGCCTGGCGCGAGCACATGCTGGTCGCCCACGGCGAACCGGGCGGGCTGGAGGTTCGCTAC GAGTGGGATGTCCATGCTCCGCACGGGCGGGTCGTGAAGCAGATCGAGGCGGGCGGCCTGACCCGTACCTTC CGCTACCTGCGCGATGCCACCGAGGTCAGCGACAGCCTCGGCCGCGTCGAACGCTACGAGTTCGCCGGCGAG GGCGGGCAGCGGCGCTGGACCGCGCTGGTCAGGGCCGACGGCAGCCGTAGCGAGTTCGACTACGACCTGTTC GGCCGCCTGGTCGCCATGCGCGATCCGCTGGGACGGGAGACGCGGCGCCGGCGCGATGGCCAGGGGCGGATG CTCGAGGAGGAGTCGCCGGGCAAGGCGCGCTATCGCAAGCGCGTCGACGAAGAGACCGGGCTGCTGGTCGAG CTGGAGGACGCGATGCAGCGCCGCTGGACCTTCGAGCGCGACGAACGGGGCAATGCGACGACGGTGCGCGGC CCGGCCGGCAGCACCCGCTACGCCTACGAAGACCCGCGCCTGCCCGACCGGCCGACGCGAATCGTCGACCCG CGCGGCGGCGAGCGGCGCCTGGAGTGGAACCGCTTCGGCCTGTTGGCCGCGTTGACCGATTGTTCCGGCCAG GTCTGGCGTTACGACTACGACAACGAAGGACGTTTGGTCGCCAGCAGCGACCCGCTGGGACAACTGACCCGG CGCCGCTACGACCCGCTGGGGCAACTGATCGGCCTGGAATTGGCCGACGGCAGCGCCCTGAGCTATGAATAC GACGCCCTTGGGCGGCAGATCCGTATCGCCGATGCCAAGGGGCACGCCACGCTGTTTTCCTGGGGGCACGGC GATCTGCTGGCGCGGGTTTCCGACGCCGGCGGCGGCGAATTGTCCTACCTGCACGACGAAGCCGGCAGGCTG GTCGCCCTGACCAACGAGAACGGCGTCCAGGCGCAGTTCCGCTACGACCTGCTGGACCGTCTGGTGGAAGAG ACCGGCTTCGACGGTCGTCGCCAACGCTATCGCTACAACGCCGCTGACGAACTGATCGCCCGCGAGGATGCC GACGGTCGCGAGACCACCTATGCCTACGACCGCGACGGCCGCCTGGCGAGCATCCGGGTTCCCGCCACCGAG CACGCACCGGCCCTGGTCGAGCGTTACCGCTGGTTGGCCGACGGCCGCCTGGCCAGCGCCGGCGGGGCGGAT TGCGAGGTGCGCTACACGTACGACGAGGTCGGTAACCTGCGCCTGGAAAGCCAGGTACATGCCGACGGTTGG GTCTACAGCGTCGAGCACAGCCACGACGCGCTAGGCGTGCGCCAGACCAGCCGCTACGGCGACGCGCCGCCG GTCGCCTGGCTGACCTATGGCCCGGGTCATCTGCACGGCGCGCTGGTCGGTGCGGTCGAGCTGGCCTTCGAG CGCGATGCCCTGCACCGCGAGGTGCGTCGCGACGCCCGCCGCGACGGGCAGGATGACGCGTTGTTCACCCAG GAGCGCCAGCACGCGCCGCTGGGACGCCTGCAGCGCAGCCGCCTGCGTCTGGCCGGCGGTTTCGACTGGCAG CGCGGCTATCGCTACGACGGACTTGGACAACTGGTCGGCATCGACGACAACCAGTATCCGTCGGTGCGCTAC GAATACGACCTCGGCGGTCGCCTGCTGGCCAGCCGGCGCGCTGGCGCGGCGGCCAGCACCTACCGCTACGAC GCCGCCGGCAACCGCCTGGAGGGCGTCGGCGAGTACGCGCGCGAGGACGCTCGCCAGGCATTCGCCGAGAAC GAACTGTACCGCTCCGGTTTCAGTCGCTCCGAGACGCGCGCGAGCCAGGCCGGCGAAGGCCCGGCGCGCTGG GCCGGCAACCGCGTGGAGAGGATCGCCGGCAACCGCTATCGCTTCGATGCGCTGGGCAACCTGGTCGAGCGT ATCGGCGCCGACGGCGAGCGCCTGCGCCTGGCCTACGACGGCGCGCAGCGCCTGGTCCATCTGACGCGCGAT TACGCCGACGGCACGCGGCTGGAGGCGCGCTACCGCTACGACGCGCTGTCGCGACGGATCGCCAAGGTGGTG CTGCGCGACGGTGTCGAGCAGCAGGTGCGCTTCGGCTGGGACGGCGATCGCCAATGCGCCGAAGCCTTTGCG CGGGAACTGCGCACCACCGTTCACGAACCGGGCGGTTTCGTCCCGTTGCTGCGCCTGGAGCAGGCCTGCGAG CCCGATCCCCCGGAGCTGCTGCAACTGCGCCAGGCGTTCGCCGCCGAAGGCCAGCCGCTGCCGGCGCAATGC GTGCCGGCGCTGGGCGAGGCGCGGATCGCTTTCTTCCACACCGATCACCTCGGTACCCCCCTGCAGCTGAGC GACGAACGTGGCCAACTGCGTTGGCAGGGCGTTCCGGACGACTGGCGGGCGGTAGCGCCGGAACGACAGCCG GGTGCGCAGCCGATCCGCTTCCAGGGGCAGTACCACGATGAGGAAAGCGGCCTCTACTACAACCGCTACCGT TACTACCTGCCGGAAGCCGGGCGCTATGCCAGCCAGGACCCGCTCGGCCTGGGCGGTGGCCCCAACCCCTAT GCCTACGCGCTGAACGCGCCCACGCTGGCCTACGATCCCACCGGCCTGATCATCCCGCTGGTGGTGATCGGC GCCTTCGCCGCCCGCGCCGCGATCGGAGCGGCGCTGGGCGCCGGCATCGAGCTGGGGATGCAAACCGGCAAG CAGGTGCTGGGGCAGATGAAGGACAACTGGGACAGCGATCGCGACCTCACCGATATCAAGTGGAAGTGCATC GACATCAACTGGAAACACGTCGGCGCCTCGGCGGCCATCGGCACCGTGGCGCCGGGCATGCTCAGCACCGGC AAGACCGTGGTGCAGTCCGCCAAGGCGATCAGGACCCTTTCCGGACAGGCGGCCAACACCGCCAACCGCGCG GCCAAGCTGGCCGCGCGCAAGGCCGCCCATGCCGATACCATCAAGAAGGCCGTGGCCACCCAGGCCGCCTGG CAGACGGGCAAGCAGATCGTCAAATGCCCGCTGAAGGACGAAGAAGAGGAGTGCCCGCCGCAATGA