ViewGene
Locus Name:
GeneID:
Location:

GeneID:1798
TrivialName: PA14_14500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14500
PAO1 Ortholog Locus:PA3828
Sequence Length:1119
Protein Length:372
Start: 1239195
Stop: 1240313
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07215.1|AE004800_4 (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 372/372 (100%), Positives = 372/372 (100%)
Sequence:
TTGATCGTTTTCCGTTATTTGTCCCGTGAAGTGCTGGTCACCATGAGCGCCGTCAGCGCCGTGCTGCTGGTG
ATCATCATGAGTGGCCGTTTCATCAAGTACCTGGCGCAAGCGGCGCAGGGGTTGCTCGACCCCGGTTCGCTG
TTCCTGATCATGGCGTTCCGGATTCCCGGCTTCCTGCAGCTGATCCTGCCGCTTGGCCTGTTCCTCGGCATC
CTGCTGGCCTACGGGCGACTCTATCTGGAAAGCGAGATGACTGTGCTCTCGGCGACCGGCATGAGTCAGAAG
CGCCTGCTCGGCTATACCATGGCCCCGGCGCTGCTGGTGGCGATCCTGGTGGCCTGGCTGAGCCTGTTCCTG
GCGCCCCAGGGCATCAACCAGTTCGCCCTGCTGTTGAACAAGCAGGATACCCTGACCGAGTTCGACACCCTG
GTCCCGGGCCGTTTCCAGGCAATGCGCGACGGTACCCGGGTGACCTATACCGAGGAACTGTCGAAGGATCGC
GGCGAACTGGCCGGCATCTTCATTTCGCAGAAGGACCTCAACAGCAGCAACCAGGAACGCGGCATCTCCATC
CTGGTGGCGGAGAAGGGCACCCAGAACATCCAGGCGGATGGCAGCCGTTACCTGATCCTGCACAACGGCTAC
CGCTACGACGGCAATCCCGGGCAGGCCAACTACCGGGCGATCCAGTACGACACCTATGGCGTGATGCTGCCC
AAGCCCGAGGCCAGCAGCGAGGTGAGCGAGCGTGACGCGGTGCCCACCGCCGACCTGTTCGGCAGCGACAAC
CCACGCTACCAGGCCGAATTGCAGTGGCGCCTGTCGACACCGCTGCTGGTGTTCGTGGTGACCCTGCTGGCG
GTGCCGCTGTCGCGGGTCAACCCACGGCAGGGGCGCTTCCTCAAGCTGCTGCCGGCGATCCTCCTTTATATG
GGCTACCTGGCCCTGCTGATCGCTGTCCGTGGCCAGTTGGACAAAGGCAAGATCCCCATGGCCATCGGCCTG
TGGTGGGTCCACGGACTATTCCTGGCGATCGGTCTTCTTCTGTTCTATTGGGAACCCTTGCGCCTGAAGCTG
GCGTCCTCCCGTGCCGGTCGCGAGGTGGCGCATGGTTAA
Translation:
MIVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLILPLGLFLGI
LLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQGINQFALLLNKQDTLTEFDTL
VPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGY
RYDGNPGQANYRAIQYDTYGVMLPKPEASSEVSERDAVPTADLFGSDNPRYQAELQWRLSTPLLVFVVTLLA
VPLSRVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLFYWEPLRLKL
ASSRAGREVAHG*
AnnotationID:1807GeneID:1798
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 20:08:27
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:yjgP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0795,pfam03739
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54797.1| (AE016860) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 375

 Score =  557 bits (1436), Expect = e-158
 Identities = 269/373 (72%), Positives = 326/373 (87%), Gaps = 1/373 (0%)

>dbj|BAC60906.1| (AP005082) putative permease [Vibrio parahaemolyticus]
          Length = 366

 Score =  224 bits (572), Expect = 5e-58
 Identities = 123/349 (35%), Positives = 204/349 (58%), Gaps = 5/349 (1%)






 
Structural Features:
COG0795, Predicted permeases 
CD-Length = 364 residues,  99.7% aligned
Score =  204 bits (520), Expect = 3e-53
Identities = 126/368 (34%), Positives = 183/368 (49%), Gaps = 16/368 (4%)

pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family.
CD-Length = 350 residues, 100.0% aligned
Score =  196 bits (500), Expect = 7e-51
Identities = 116/361 (32%), Positives = 167/361 (46%), Gaps = 17/361 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14433




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20746




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31729




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1798_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1798
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3167
                           PA3828_tr
                           translation of PA3828
                           372
                           99.99
                           99.99
                           0
                           1867.0
     

     
     
98428
                           gb|AAG07215.1|AE004800_4
                           (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           372
                           99.73
                           99.99
                           0
                           1865.0
     

     
     
98429
                           gb|AAN66607.1|AE016288_6
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           373
                           76.94
                           87.93
                           3
                           1462.0
     

     
     
98430
                           gb|AAO54797.1|
                           (AE016860) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           375
                           71.46
                           86.93
                           3
                           1435.0
     

     






      

          
GC ORFID: 44800How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3828Glimmer Score: 

          
Start: 3714743Stop: 3713625

          
Length: 1119


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3828 translation of PA3828Homolog Bit Score 723.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4403 (ORF: BLASTX 558.0), t_PA3828 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGATCGTTTTCCGTTATTTGTCCCGTGAAGTGCTGGTCACCATGAGCGCCGTCAGCGCCGTGCTGCTGGTG 
ATCATCATGAGTGGCCGTTTCATCAAGTACCTGGCGCAAGCGGCGCAGGGGTTGCTCGACCCCGGTTCGCTG 
TTCCTGATCATGGCGTTCCGGATTCCCGGCTTCCTGCAGCTGATCCTGCCGCTTGGCCTGTTCCTCGGCATC 
CTGCTGGCCTACGGGCGACTCTATCTGGAAAGCGAGATGACTGTGCTCTCGGCGACCGGCATGAGTCAGAAG 
CGCCTGCTCGGCTATACCATGGCCCCGGCGCTGCTGGTGGCGATCCTGGTGGCCTGGCTGAGCCTGTTCCTG 
GCGCCCCAGGGCATCAACCAGTTCGCCCTGCTGTTGAACAAGCAGGATACCCTGACCGAGTTCGACACCCTG 
GTCCCGGGCCGTTTCCAGGCAATGCGCGACGGTACCCGGGTGACCTATACCGAGGAACTGTCGAAGGATCGC 
GGCGAACTGGCCGGCATCTTCATTTCGCAGAAGGACCTCAACAGCAGCAACCAGGAACGCGGCATCTCCATC 
CTGGTGGCGGAGAAGGGCACCCAGAACATCCAGGCGGATGGCAGCCGTTACCTGATCCTGCACAACGGCTAC 
CGCTACGACGGCAATCCCGGGCAGGCCAACTACCGGGCGATCCAGTACGACACCTATGGCGTGATGCTGCCC 
AAGCCCGAGGCCAGCAGCGAGGTGAGCGAGCGTGACGCGGTGCCCACCGCCGACCTGTTCGGCAGCGACAAC 
CCACGCTACCAGGCCGAATTGCAGTGGCGCCTGTCGACACCGCTGCTGGTGTTCGTGGTGACCCTGCTGGCG 
GTGCCGCTGTCGCGGGTCAACCCACGGCAGGGGCGCTTCCTCAAGCTGCTGCCGGCGATCCTCCTTTATATG 
GGCTACCTGGCCCTGCTGATCGCTGTCCGTGGCCAGTTGGACAAAGGCAAGATCCCCATGGCCATCGGCCTG 
TGGTGGGTCCACGGACTATTCCTGGCGATCGGTCTTCTTCTGTTCTATTGGGAACCCTTGCGCCTGAAGCTG 
GCGTCCTCCCGTGCCGGTCGCGAGGTGGCGCATGGTTAA