ViewGene
Locus Name:
GeneID:
Location:

GeneID:1796
TrivialName: PA14_24310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24310
PAO1 Ortholog Locus:PA3080
Sequence Length:1098
Protein Length:365
Start: 2111927
Stop: 2113024
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06468.1|AE004732_2 (AE004732) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 361/365 (98%), Positives = 363/365 (99%)
Sequence:
ATGCGTGAGCCCATGACGTGGCGCACTTCGCCCGGCCAATCCGCGGACGCTTCGCGGCATCCGGCCATTCCT
TCCAGATCGCCCCTGGCCAGCAGGGCCCTGTCGTTTCTCGGGGCGCTTTCTCTTCTGACCTTCGCCGCCACC
CCGGTTCTGGCCGAGTCGACGCCAACCGCCGCGCCGCCGCAATTCGCCGTGGAATCGCCGAAGGCCGCCAGC
AGCCTGCTGCTCAGCGTCGCCCATGCCGGCAAGCGGCTGGTCGCGGTCGGCGACCGTGGGCATATCCTGCTC
TCCGACGACGACGGCAAGACCTGGACCCAGGCCAAGGTGCCGACCCGCCAGTTGCTCACCTCGGTGTTCTTC
GTCAACGAGCGCAAGGGCTGGGCGGTCGGGCACGATGCGCAGATCCTCGTCAGCGACGACGCCGGCAGCACC
TGGACCAGGCAGTTCGAGGACCTCGGCCGCGAAGCGCCGTTGCTGGACATCTGGTTCGCCGACGAACAGCAC
GGCCTGGCCGTCGGTGCCTATGGCGCGCTGCTGGAGACCCGCGACGGCGGCCAGCACTGGGAAGACGTCAGC
GAGCGCCTGGACAACGAGGACCAGTTCCACCTCAACGCCATCGCCGCGGTCAAGGACAACGGCCTGCTGGTG
GTCGGCGAAGCCGGCAGTCTGTTCCGCTCGAAGGACTGGGGCGCCACCTGGGAAAAACTCGAAGGCCCCTAC
GAGGGCTCGCTGTTCGGCGCCATCGGTACCGCCGATGCGGGCGGCGTGCTGGTCTACGGCCTGCGCGGCCAC
CTGTTCCGCTCCGCCGATTTCGGCGACAGCTGGGAAGAGATACCGCTGAAGGCGGCGTCCGGCGACCTGGAA
TTCGGTCTCTCCGACGGCGCGCTGCTGGCGGACGGGCGTATCGTCGTGGTCGGCCACGGCGGCAGTGTCCTC
GAAAGCTCCGACGGCGGGCGCAGCTTCAGCGTGTTCAACCGTCCCGACCGGCTGTCCCTGGCCGGCGTCAGC
GCCACCGGCGACGGCCACCTGATCCTGGTCGGCCAGGGCGGCGTGCACCTCGCTGCGGCGAACGGTGCCGCG
CTCGAACAACCACAATAA
Translation:
MREPMTWRTSPGQSADASRHPAIPSRSPLASRALSFLGALSLLTFAATPVLAESTPTAAPPQFAVESPKAAS
SLLLSVAHAGKRLVAVGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNERKGWAVGHDAQILVSDDAGST
WTRQFEDLGREAPLLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHLNAIAAVKDNGLLV
VGEAGSLFRSKDWGATWEKLEGPYEGSLFGAIGTADAGGVLVYGLRGHLFRSADFGDSWEEIPLKAASGDLE
FGLSDGALLADGRIVVVGHGGSVLESSDGGRSFSVFNRPDRLSLAGVSATGDGHLILVGQGGVHLAAANGAA
LEQPQ*
AnnotationID:1805GeneID:1796
AnnotatorUID: diggins
Modification Date/Time: 2005-11-08 06:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative BNR/Asp-box repeat protein
Cell Localization:()
Synonyms:PA3080
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4447
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67632.1|AE016393_1 (AE016781) BNR domain protein [Pseudomonas putida KT2440]
          Length = 319

 Score =  435 bits (1119), Expect = e-121
 Identities = 209/314 (66%), Positives = 251/314 (79%)

>gb|AAO57247.1| (AE016869) BNR/Asp-box repeat protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 340

 Score =  434 bits (1115), Expect = e-121
 Identities = 218/365 (59%), Positives = 261/365 (71%), Gaps = 28/365 (7%)








 
Structural Features:
COG4447, Uncharacterized protein related to plant 
photosystem II stability/assembly factor
CD-Length = 339 residues, 100.0% aligned
Score =  369 bits (949), Expect = 2e-103
Identities = 121/342 (35%), Positives = 161/342 (47%), Gaps = 9/342 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20742




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32433




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1796_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1796
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3165
                           PA3080_tr
                           translation of PA3080
                           365
                           98.90
                           99.45
                           0
                           1866.0
     

     
     
98307
                           gb|AAG06468.1|AE004732_2
                           (AE004732) hypothetical protein PA3080 [Pseudomonas aeruginosa PAO1]
                           365
                           98.90
                           99.45
                           0
                           1866.0
     

     
     
98309
                           gb|AAO57247.1|
                           (AE016869) BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           59.40
                           71.11
                           29
                           1132.0
     

     
     
98308
                           gb|AAN67632.1|AE016393_1
                           (AE016781) BNR domain protein [Pseudomonas putida KT2440]
                           368
                           56.79
                           68.47
                           52
                           1118.0
     

     






      

          
GC ORFID: 44798How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3080Glimmer Score: 

          
Start: 2842003Stop: 2840906

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3080 translation of PA3080Homolog Bit Score 723.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene733 (ORF: BLASTX 437.0), t_PA3080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGAGCCCATGACGTGGCGCACTTCGCCCGGCCAATCCGCGGACGCTTCGCGGCATCCGGCCATTCCT 
TCCAGATCGCCCCTGGCCAGCAGGGCCCTGTCGTTTCTCGGGGCGCTTTCTCTTCTGACCTTCGCCGCCACC 
CCGGTTCTGGCCGAGTCGACGCCAACCGCCGCGCCGCCGCAATTCGCCGTGGAATCGCCGAAGGCCGCCAGC 
AGCCTGCTGCTCAGCGTCGCCCATGCCGGCAAGCGGCTGGTCGCGGTCGGCGACCGTGGGCATATCCTGCTC 
TCCGACGACGACGGCAAGACCTGGACCCAGGCCAAGGTGCCGACCCGCCAGTTGCTCACCTCGGTGTTCTTC 
GTCAACGAGCGCAAGGGCTGGGCGGTCGGGCACGATGCGCAGATCCTCGTCAGCGACGACGCCGGCAGCACC 
TGGACCAGGCAGTTCGAGGACCTCGGCCGCGAAGCGCCGTTGCTGGACATCTGGTTCGCCGACGAACAGCAC 
GGCCTGGCCGTCGGTGCCTATGGCGCGCTGCTGGAGACCCGCGACGGCGGCCAGCACTGGGAAGACGTCAGC 
GAGCGCCTGGACAACGAGGACCAGTTCCACCTCAACGCCATCGCCGCGGTCAAGGACAACGGCCTGCTGGTG 
GTCGGCGAAGCCGGCAGTCTGTTCCGCTCGAAGGACTGGGGCGCCACCTGGGAAAAACTCGAAGGCCCCTAC 
GAGGGCTCGCTGTTCGGCGCCATCGGTACCGCCGATGCGGGCGGCGTGCTGGTCTACGGCCTGCGCGGCCAC 
CTGTTCCGCTCCGCCGATTTCGGCGACAGCTGGGAAGAGATACCGCTGAAGGCGGCGTCCGGCGACCTGGAA 
TTCGGTCTCTCCGACGGCGCGCTGCTGGCGGACGGGCGTATCGTCGTGGTCGGCCACGGCGGCAGTGTCCTC 
GAAAGCTCCGACGGCGGGCGCAGCTTCAGCGTGTTCAACCGTCCCGACCGGCTGTCCCTGGCCGGCGTCAGC 
GCCACCGGCGACGGCCACCTGATCCTGGTCGGCCAGGGCGGCGTGCACCTCGCTGCGGCGAACGGTGCCGCG 
CTCGAACAACCACAATAA