ViewGene
Locus Name:
GeneID:
Location:

GeneID:1795
TrivialName: PA14_42760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42760
PAO1 Ortholog Locus:PA1681
Sequence Length:1092
Protein Length:363
Start: 3803935
Stop: 3802844
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05070.1|AE004595_9 (AE004595) chorismate synthase [Pseudomonas aeruginosa PAO1]
Identities = 363/363 (100%), Positives = 363/363 (100%)
Sequence:
ATGTCCGGCAACACCTACGGCAAGCTCTTCACCGTCACCACCGCAGGCGAAAGCCACGGCCCGGCGCTGGTC
GCCATCGTCGATGGGTGCCCCCCGGGGCTGGAACTGTCCGCCCGGGACCTGCAACGCGACCTCGACCGGCGC
AAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAGATTCTTTCCGGGGTGTTC
GAGGGCAAGACCACCGGCACGCCGATCGGCCTGCTGATCCGCAACACCGACCAGAAGTCCAAGGACTACTCG
GCGATCAAGGACCTGTTCCGCCCGGCCCACGCCGACTACACCTACCACCACAAGTACGGCGTGCGCGACTAC
CGCGGCGGCGGCCGTTCTTCGGCGCGCGAGACCGCCATGCGCGTGGCCGCCGGGGCTATTGCCAAGAAATAC
CTGGCGGGCCTGGGCATCCAGGTGCGCGGCTACATGAGCCAGCTCGGGCCGATCGAGATTCCGTTCAGGAGC
TGGGACAGCGTCGAGCAGAATGCCTTCTTCAGCCCCGACCCGGACAAGGTGCCGGAGCTGGAGGCCTACATG
GACCAATTGCGCCGCGACCAGGATTCGGTCGGGGCGAAGATCACCGTGGTTGCCGAAGGCGTGCCGCCGGGC
CTGGGCGAGCCGATCTTCGACCGCCTGGACGCCGAACTGGCGCATGCGCTGATGAGCATCAACGCGGTGAAG
GGCGTGGAGATCGGCGCCGGCTTCGCCAGCATCGCCCAGCGCGGCACCGAGCACCGCGACGAACTGACCCCG
CAAGGCTTCCTGTCGAACAATGCCGGCGGCATCCTCGGCGGGATCTCCTCTGGCCAGCCGATCGTCGCCCAC
CTGGCGCTGAAGCCGACCTCCAGCATCACCACTCCCGGGCGCTCGATCGATACCGCCGGCGAGCCGGTGGAC
ATGATCACCAAGGGCCGTCACGACCCGTGCGTCGGCATCCGCGCCACGCCGATCGCCGAGGCGATGATGGCC
ATCGTCCTGCTCGACCAGTTGCTGCGCCAGCGTGGGCAGAACGCCGACGTGCGCGTCGACACGCCGGTCCTG
CCGCAGCTGTGA
Translation:
MSGNTYGKLFTVTTAGESHGPALVAIVDGCPPGLELSARDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVF
EGKTTGTPIGLLIRNTDQKSKDYSAIKDLFRPAHADYTYHHKYGVRDYRGGGRSSARETAMRVAAGAIAKKY
LAGLGIQVRGYMSQLGPIEIPFRSWDSVEQNAFFSPDPDKVPELEAYMDQLRRDQDSVGAKITVVAEGVPPG
LGEPIFDRLDAELAHALMSINAVKGVEIGAGFASIAQRGTEHRDELTPQGFLSNNAGGILGGISSGQPIVAH
LALKPTSSITTPGRSIDTAGEPVDMITKGRHDPCVGIRATPIAEAMMAIVLLDQLLRQRGQNADVRVDTPVL
PQL*
AnnotationID:1804GeneID:1795
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:35
Gene Name:aroC
Confidence Code:2
GeneProduct:chorismate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01264
Secondary Functional Category(ies):
EC Number:4.6.1.4
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67449.1|AE016372_4 (AE016780) chorismate synthase [Pseudomonas putida KT2440]
          Length = 363

 Score =  667 bits (1720), Expect = 0.0
 Identities = 332/362 (91%), Positives = 345/362 (95%)

>gb|AAO55561.1| (AE016863) chorismate synthase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 363

 Score =  659 bits (1701), Expect = 0.0
 Identities = 329/363 (90%), Positives = 340/363 (93%)

>gb|AAN81325.1|AE016764_7 (AE016764) Chorismate synthase [Escherichia coli CFT073]
          Length = 362

 Score =  523 bits (1347), Expect = e-148
 Identities = 258/359 (71%), Positives = 302/359 (84%), Gaps = 1/359 (0%)






 
Structural Features:
pfam01264, Chorismate_synt, Chorismate synthase.
CD-Length = 349 residues, 100.0% aligned
Score =  460 bits (1184), Expect = 1e-130
Identities = 200/349 (57%), Positives = 251/349 (71%), Gaps = 11/349 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20740




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37165




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1795_cdd.html


    		




 
URL:

















    ReferenceID:37874




  
Author/Investigator(s):
        White PJ, Millar G, Coggins JR.





  
Title:
        The overexpression, purification and complete amino acid sequence of chorismate synthase from Escherichia coli K12 and its comparison with the enzyme from Neurospora crassa.




  
PubMed:
        2969724


MedLine:
        




    
Source:
Biochem J. 1988 Apr 15;251(2):313-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2969724

















    ReferenceID:37875




  
Author/Investigator(s):
        Charles IG, Lamb HK, Pickard D, Dougan G, Hawkins AR.





  
Title:
        Isolation, characterization and nucleotide sequences of the aroC genes encoding chorismate synthase from Salmonella typhi and Escherichia coli.




  
PubMed:
        2182772


MedLine:
        




    
Source:
J Gen Microbiol. 1990 Feb;136(2):353-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2182772









           
Homologs By Global Alignment 

           

       



     
Gene ID:1795
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3164
                           PA1681_tr
                           translation of PA1681
                           363
                           99.99
                           99.99
                           0
                           1867.0
     

     
     
98207
                           gb|AAG05070.1|AE004595_9
                           (AE004595) chorismate synthase [Pseudomonas aeruginosa PAO1]
                           363
                           99.99
                           99.99
                           0
                           1867.0
     

     
     
98208
                           gb|AAN67449.1|AE016372_4
                           (AE016780) chorismate synthase [Pseudomonas putida KT2440]
                           363
                           91.46
                           95.04
                           0
                           1718.0
     

     
     
98209
                           gb|AAO55561.1|
                           (AE016863) chorismate synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           363
                           90.63
                           93.66
                           0
                           1701.0
     

     
     
98214
                           gb|AAA23487.1|
                           (M27714) chorismate synthase (EC 4.6.1.4) [Escherichia coli]
                           364
                           70.87
                           82.96
                           4
                           1344.0
     

     






      

          
GC ORFID: 44797How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1681Glimmer Score: 

          
Start: 1149974Stop: 1151065

          
Length: 1092


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1681 translation of PA1681Homolog Bit Score 723.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene855 (ORF: BLASTX 659.0), t_PA1681 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGCAACACCTACGGCAAGCTCTTCACCGTCACCACCGCAGGCGAAAGCCACGGCCCGGCGCTGGTC 
GCCATCGTCGATGGGTGCCCCCCGGGGCTGGAACTGTCCGCCCGGGACCTGCAACGCGACCTCGACCGGCGC 
AAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAGATTCTTTCCGGGGTGTTC 
GAGGGCAAGACCACCGGCACGCCGATCGGCCTGCTGATCCGCAACACCGACCAGAAGTCCAAGGACTACTCG 
GCGATCAAGGACCTGTTCCGCCCGGCCCACGCCGACTACACCTACCACCACAAGTACGGCGTGCGCGACTAC 
CGCGGCGGCGGCCGTTCTTCGGCGCGCGAGACCGCCATGCGCGTGGCCGCCGGGGCTATTGCCAAGAAATAC 
CTGGCGGGCCTGGGCATCCAGGTGCGCGGCTACATGAGCCAGCTCGGGCCGATCGAGATTCCGTTCAGGAGC 
TGGGACAGCGTCGAGCAGAATGCCTTCTTCAGCCCCGACCCGGACAAGGTGCCGGAGCTGGAGGCCTACATG 
GACCAATTGCGCCGCGACCAGGATTCGGTCGGGGCGAAGATCACCGTGGTTGCCGAAGGCGTGCCGCCGGGC 
CTGGGCGAGCCGATCTTCGACCGCCTGGACGCCGAACTGGCGCATGCGCTGATGAGCATCAACGCGGTGAAG 
GGCGTGGAGATCGGCGCCGGCTTCGCCAGCATCGCCCAGCGCGGCACCGAGCACCGCGACGAACTGACCCCG 
CAAGGCTTCCTGTCGAACAATGCCGGCGGCATCCTCGGCGGGATCTCCTCTGGCCAGCCGATCGTCGCCCAC 
CTGGCGCTGAAGCCGACCTCCAGCATCACCACTCCCGGGCGCTCGATCGATACCGCCGGCGAGCCGGTGGAC 
ATGATCACCAAGGGCCGTCACGACCCGTGCGTCGGCATCCGCGCCACGCCGATCGCCGAGGCGATGATGGCC 
ATCGTCCTGCTCGACCAGTTGCTGCGCCAGCGTGGGCAGAACGCCGACGTGCGCGTCGACACGCCGGTCCTG 
CCGCAGCTGTGA