ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1794

TrivialName: PA14_53210

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_53210

PAO1 Ortholog Locus: PA0855

Sequence Length: 1020

Protein Length: 339

Start: 4716344

Stop: 4717363

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04244.1|AE004520_7 (AE004520) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 338/339 (99%), Positives = 338/339 (99%)

Sequence:

ATGAACGGAACCGCCGCCGATACCCTCGCCGTATCGCCCCCGCCCCTGCGCAACCTCTGCGACAGCCACGGC
CGGCTCGATCCCCGGGCGGTCGGCTGGTCCGCCCGGCCGCGGGTGCTCTGCCACATCCCCGGCCACTTCGGC
CGGCGCAAGCGCTGGAACCACTGGTGCATCGTCAGCCCCGGCTGGATGCTCTCGCTGACCATCGCCGACCTC
GACTACCTGACCTACGGCGCCGCCTATTTCCTCGACCTGGACAGCGGCCAGGCGGTAGCGCACACGCAGATC
CGCTTCTTCGGCCTCGGCTGCCAGTTGCCCGACGAGCCGCAGGCCAGCCATGCCTTCGAGCATCCCCGCCTG
CAATTGCGCTTCGACGAACAGCCCGGGCGCCTGCGCGTCACCGGCCAGGCCCCGGACCTCGGCGGCCTGCCG
CTGGAGCTGGCGCTGGAAGTGCGACGACCGTCGCACCTGGAGTCGGTGAACCTGGTGGTGCCGATGGGCGAA
CACACCTTCCATGCCTGTAGCCGCCAGCTCGGCCTGCCGATCAGCGGCTGCCTGCAACTCGGCCGCCGGCGC
TACGACTGCCAGGCGGGCCAGAGCTTCGCCGCGCTGGACTTCGGCCGCGGCGTCTGGCCGCTGCATACCTAC
TGGACCCGCGCCGCCTTCGCCGCCCCCGGCGGCATCGCCGGCAACTTCGGCACCGGCTGGACCGAAGCCAGC
GACCTGCGCGAGAACGCCCTGTGGTTCGGCGGCAAGCTCAGCCGCGTGCTCGACGACGTGCACATCCGCGAG
CCTCGCGACCCGCTGGCCGAATGGCGCCTGGACAGCGCCTGCGGTCGCGTCGAGCTGCTCTTCCGTCCCGAA
CAGCTGCACCAGGCGCGGCCCAGCGTCGGCCTGTTCTATGCCAATACCCGCCAGTGGTTCGGCCGTTTCAAC
GGCACCCTGCGCCACGACGACGGCGACTGCGTGCCGGTGGACGGCGCCCTCGGCTGGATCGGTTCGACCCGC
GCGCGCTGGTGA

Translation:

MNGTAADTLAVSPPPLRNLCDSHGRLDPRAVGWSARPRVLCHIPGHFGRRKRWNHWCIVSPGWMLSLTIADL
DYLTYGAAYFLDLDSGQAVAHTQIRFFGLGCQLPDEPQASHAFEHPRLQLRFDEQPGRLRVTGQAPDLGGLP
LELALEVRRPSHLESVNLVVPMGEHTFHACSRQLGLPISGCLQLGRRRYDCQAGQSFAALDFGRGVWPLHTY
WTRAAFAAPGGIAGNFGTGWTEASDLRENALWFGGKLSRVLDDVHIREPRDPLAEWRLDSACGRVELLFRPE
QLHQARPSVGLFYANTRQWFGRFNGTLRHDDGDCVPVDGALGWIGSTRARW*

AnnotationID:1803 GeneID:1794

AnnotatorUID: danlee

Modification Date/Time: 2004-04-30 17:05:32

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0855

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:3591

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20738

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1794

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3163 PA0855_tr translation of PA0855 339 99.70 99.70 0 1866.0

98206 gb|AAG04244.1|AE004520_7 (AE004520) hypothetical protein PA0855 [Pseudomonas aeruginosa PAO1] 339 99.70 99.70 0 1866.0

GC ORFID: `44796`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0855`	Glimmer Score:
Start: `237563`	Stop: `236544`
Length: `1020`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0855 translation of PA0855`	Homolog Bit Score `723.0`
Other Homologs: `t_PA0855 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGGAACCGCCGCCGATACCCTCGCCGTATCGCCCCCGCCCCTGCGCAACCTCTGCGACAGCCACGGC CGGCTCGATCCCCGGGCGGTCGGCTGGTCCGCCCGGCCGCGGGTGCTCTGCCACATCCCCGGCCACTTCGGC CGGCGCAAGCGCTGGAACCACTGGTGCATCGTCAGCCCCGGCTGGATGCTCTCGCTGACCATCGCCGACCTC GACTACCTGACCTACGGCGCCGCCTATTTCCTCGACCTGGACAGCGGCCAGGCGGTAGCGCACACGCAGATC CGCTTCTTCGGCCTCGGCTGCCAGTTGCCCGACGAGCCGCAGGCCAGCCATGCCTTCGAGCATCCCCGCCTG CAATTGCGCTTCGACGAACAGCCCGGGCGCCTGCGCGTCACCGGCCAGGCCCCGGACCTCGGCGGCCTGCCG CTGGAGCTGGCGCTGGAAGTGCGACGACCGTCGCACCTGGAGTCGGTGAACCTGGTGGTGCCGATGGGCGAA CACACCTTCCATGCCTGTAGCCGCCAGCTCGGCCTGCCGATCAGCGGCTGCCTGCAACTCGGCCGCCGGCGC TACGACTGCCAGGCGGGCCAGAGCTTCGCCGCGCTGGACTTCGGCCGCGGCGTCTGGCCGCTGCATACCTAC TGGACCCGCGCCGCCTTCGCCGCCCCCGGCGGCATCGCCGGCAACTTCGGCACCGGCTGGACCGAAGCCAGC GACCTGCGCGAGAACGCCCTGTGGTTCGGCGGCAAGCTCAGCCGCGTGCTCGACGACGTGCACATCCGCGAG CCTCGCGACCCGCTGGCCGAATGGCGCCTGGACAGCGCCTGCGGTCGCGTCGAGCTGCTCTTCCGTCCCGAA CAGCTGCACCAGGCGCGGCCCAGCGTCGGCCTGTTCTATGCCAATACCCGCCAGTGGTTCGGCCGTTTCAAC GGCACCCTGCGCCACGACGACGGCGACTGCGTGCCGGTGGACGGCGCCCTCGGCTGGATCGGTTCGACCCGC GCGCGCTGGTGA