ViewGene

Locus Name:
GeneID:
Location:

GeneID:1793
TrivialName: PA14_01680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01680
PAO1 Ortholog Locus:PA0137
Sequence Length:1098
Protein Length:365
Start: 153952
Stop: 155049
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03527.1|AE004451_8 (AE004451) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 364/365 (99%), Positives = 365/365 (100%)
Sequence:
ATGCTGTTGTCCCTGGAACCGCGCGGCCGGCAGTCGCGCTGGATGCTGCTGGCCTCTCCGCTGCTGGCGGGG
TTGCTGACCCTGGTCTGCGGCGCGCTGCTGTTCGCCTGTCTCGGCCACGATCCGTGGCAGACCCTGCATACC
GTGCTGGTACAGCCGCTCAGCGACCTCTATGGGCTCGGCGAGCTGCTGGTCAAGGCCATGCCGATCCTGCTC
TGTGCCCTCGGCCTGGCACTGGCCTACCAGGCGCGCGTGTGGAACATCGGCGCGGAGGGCCAGTTGCTGGTC
GGCGCCCTGGCCGGCAGCGCGGTGGCGATCCAGTTGCTCGACTGGCAGAGCCGCTGGGCGCTGGCCTGGGTG
CTGCTCGCCGGCACCGCTGCCGGGGCGCTCTGGGCCGGGTTCGCCGCCTGGCTGCGAACGCGCTTCAACGCC
AACGAGATCCTGACCACCATCATGCTCAACTACATCGCGCTGAACCTGCTGCTGTACGGCGTGCACGGGCCG
TTGAAGGACCCGGATGGCTTCAACTTCCCGCAGTCGGCGCTGTTCGGCGAGGCCAGCCGCCTGCCGGCGCTG
TTCGAGGACAGCCGGGTGCACCTTGGCGCATTGTTCGGCCTGCTGGCGCTGGCGGCGGTCTGGGTGCTGGCG
CAGCGCAGCTTCCTCGGTTTCCAGGTCCGCGTGCTCGGCCTCGACCGCCGCGCCGCCGGTTTCGTCGGTTTC
CGCGAGAAGCGCCTGGTCTGGTTCGTGCTGCTGTTCTCCGGCGCGCTGGCAGGCCTGGCCGGCGTCTGCGAG
GTCGCCGGGCCGATCGGCCAACTGGTGCCGCAGGTCTCGCCGGGCTACGGCTATGCGGCGATCACCGTGGCC
TTCCTCGGCCGTCTCAATCCCTTCGGCATCCTCTGCGCCAGCCTGCTGATGGCGTTGCTCTACCTCGGCGGC
GAGGCCGCGCAGATGAGCCTCAACCTGCCGTTGGCGCTGACCGGGCTGTTCCAGGGGATGATGCTGTTCTTC
CTCCTCGCCTGCGACGTGCTGATCCTCTACCGCCCACGTTTGCACGGACGCTGGCGCAAGCGCCCGGCGCTG
CGCGACGCCCTGGCCTGA
Translation:
MLLSLEPRGRQSRWMLLASPLLAGLLTLVCGALLFACLGHDPWQTLHTVLVQPLSDLYGLGELLVKAMPILL
CALGLALAYQARVWNIGAEGQLLVGALAGSAVAIQLLDWQSRWALAWVLLAGTAAGALWAGFAAWLRTRFNA
NEILTTIMLNYIALNLLLYGVHGPLKDPDGFNFPQSALFGEASRLPALFEDSRVHLGALFGLLALAAVWVLA
QRSFLGFQVRVLGLDRRAAGFVGFREKRLVWFVLLFSGALAGLAGVCEVAGPIGQLVPQVSPGYGYAAITVA
FLGRLNPFGILCASLLMALLYLGGEAAQMSLNLPLALTGLFQGMMLFFLLACDVLILYRPRLHGRWRKRPAL
RDALA*
AnnotationID:1802GeneID:1793
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0137
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4603
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54310.1| (AE016858) ABC transporter, permease protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 366

 Score =  565 bits (1456), Expect = e-160
 Identities = 281/357 (78%), Positives = 313/357 (87%)

>emb|CAD15881.1| (AL646068) PROBABLE TRANSMEMBRANE ABC TRANSPORTER PROTEIN
           [Ralstonia solanacearum]
          Length = 369

 Score =  353 bits (907), Expect = 7e-97
 Identities = 190/357 (53%), Positives = 244/357 (68%), Gaps = 8/357 (2%)

Structural Features:
COG4603, COG4603, ABC-type uncharacterized transport system, 
permease component
CD-Length = 356 residues,  99.4% aligned
Score =  311 bits (798), Expect = 9e-86
Identities = 174/357 (48%), Positives = 228/357 (63%), Gaps = 4/357 (1%)
Genomic Context:
Comment:
ReferenceID:3589
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20736
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33516
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1793_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1793

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3162 PA0137_tr translation of PA0137 365 99.72 99.99 0 1869.0
98193 gb|AAG03527.1|AE004451_8 (AE004451) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 365 99.72 99.99 0 1869.0
98194 gb|AAO54310.1| (AE016858) ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 368 76.90 85.59 5 1451.0
98195 gb|AAK50326.1|U66917_95 (U66917) putative permease from ABC transporter [Pseudomonas sp. ADP] 375 50.40 65.86 12 917.0
98197 emb|CAE30016.1| (BX572607) putative permease protein of sugar ABC transporter [Rhodopseudomonas palustris CGA009] 374 50.26 63.63 20 871.0
GC ORFID: 44795How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0137Glimmer Score:
Start: 5955291Stop: 5956388
Length: 1098
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0137 translation of PA0137Homolog Bit Score 724.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3592 (ORF: BLASTX 563.0), t_PA0137 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGTTGTCCCTGGAACCGCGCGGCCGGCAGTCGCGCTGGATGCTGCTGGCCTCTCCGCTGCTGGCGGGG
TTGCTGACCCTGGTCTGCGGCGCGCTGCTGTTCGCCTGTCTCGGCCACGATCCGTGGCAGACCCTGCATACC
GTGCTGGTACAGCCGCTCAGCGACCTCTATGGGCTCGGCGAGCTGCTGGTCAAGGCCATGCCGATCCTGCTC
TGTGCCCTCGGCCTGGCACTGGCCTACCAGGCGCGCGTGTGGAACATCGGCGCGGAGGGCCAGTTGCTGGTC
GGCGCCCTGGCCGGCAGCGCGGTGGCGATCCAGTTGCTCGACTGGCAGAGCCGCTGGGCGCTGGCCTGGGTG
CTGCTCGCCGGCACCGCTGCCGGGGCGCTCTGGGCCGGGTTCGCCGCCTGGCTGCGAACGCGCTTCAACGCC
AACGAGATCCTGACCACCATCATGCTCAACTACATCGCGCTGAACCTGCTGCTGTACGGCGTGCACGGGCCG
TTGAAGGACCCGGATGGCTTCAACTTCCCGCAGTCGGCGCTGTTCGGCGAGGCCAGCCGCCTGCCGGCGCTG
TTCGAGGACAGCCGGGTGCACCTTGGCGCATTGTTCGGCCTGCTGGCGCTGGCGGCGGTCTGGGTGCTGGCG
CAGCGCAGCTTCCTCGGTTTCCAGGTCCGCGTGCTCGGCCTCGACCGCCGCGCCGCCGGTTTCGTCGGTTTC
CGCGAGAAGCGCCTGGTCTGGTTCGTGCTGCTGTTCTCCGGCGCGCTGGCAGGCCTGGCCGGCGTCTGCGAG
GTCGCCGGGCCGATCGGCCAACTGGTGCCGCAGGTCTCGCCGGGCTACGGCTATGCGGCGATCACCGTGGCC
TTCCTCGGCCGTCTCAATCCCTTCGGCATCCTCTGCGCCAGCCTGCTGATGGCGTTGCTCTACCTCGGCGGC
GAGGCCGCGCAGATGAGCCTCAACCTGCCGTTGGCGCTGACCGGGCTGTTCCAGGGGATGATGCTGTTCTTC
CTCCTCGCCTGCGACGTGCTGATCCTCTACCGCCCACGTTTGCACGGACGCTGGCGCAAGCGCCCGGCGCTG
CGCGACGCCCTGGCCTGA