ViewGene
Locus Name:
GeneID:
Location:

GeneID:1792
TrivialName: PA14_60630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60630
PAO1 Ortholog Locus:PA4582
Sequence Length:1146
Protein Length:381
Start: 5403895
Stop: 5405040
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07970.1|AE004872_1 (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 377/381 (98%), Positives = 379/381 (99%)
Sequence:
ATGAAAATGCTGAAGCGCTTTATCGTGAAGAAGAACGAACGCGGCCTGCTGTACTCCGAAGGCGACTTCCTC
GCCGTGCTCGAACCGGGCACCTACCGCCGCTTCGATCCGTACGACCGCCTGAGCCTGGAAAGCTTCAGCCTG
AACACCCCGCAGTTCGAACACCGCCTGGCCGGCTACCTGCGGCAGAGCGAACCGCAACTGGTGGAGCGCTAT
TTCACCCGGATGGACCTGGGCGACAACGAGGCCGGCCTGCGCTACGAGGACGGCGTGCTGGTGGAGCTGCTC
GCACCGGGCAGCCGCCGACTGTACTGGAAAGGCCAGACCGAGCAGCGCCTGGAGCGCATCGACCTGACCCAG
GACTATCGATTGTCCGCCGCGCTGGTCGCCCAGTTGCACCAGCCGAACCTGCGCGGCCGGGCCCTGGCGGGC
CTGGACGCAGTGTTGCTGGTCCAGGTGCCGGCGTTCCAGGTCGGCGTGCTCAAGGTCGACGGCGCCCTTGCC
GGCCTGCTGCAAGCCGGACAATACGGTTTCTGGCGCTACAACCGGCAAGTCAGCGTGGAACTGGTCGACACC
CGTATCCAGGCGCTGGAGGTCAGCGGCCAGGAGATCCTCACCCGCGACAAGGTCAGCCTGCGCCTGAACCTC
GCCGCCAACTGGCGCTACAACGACGTACTCACCGCCTTCTCGCGGCTGAGCAAGCCGCTGGAGTACCTGTAC
CGCGAGCTGCAGCTCGGCCTGCGAGCGGCAGTGGGCACCCGCACCCTCGACGAACTGCTGGAGAACAAGCAG
TCGATCGACGAAGCGGTCAGCGCCCACCTGGCCGCCAAGCTGGAAGACAGCGGCCTGGAAGTGAGCGGCCTG
GGCGTGCGCGACATCATCCTCCCGGGCGAAATGAAGACCCTGCTGGCGCAGGTGGTGGAGGCGGAGAAGGCG
GCCCAGGCCAATGTGATCCGCCGCCGCGAGGAAACCTCGGCGACCCGCTCGCTGCTGAATACCGCGAAGGTC
ATGGAGGAAAACCCGACCGCGCTGCGTCTGAAGGAACTGGAAACCCTGGAGCGGGTGGCCGAGCGCATCGAC
CGGATTTCGGTATTCGGTGGCCTGGACCAGGTATTGAACGGACTGGTCACGCTGAAGCAGGCCTGA
Translation:
MKMLKRFIVKKNERGLLYSEGDFLAVLEPGTYRRFDPYDRLSLESFSLNTPQFEHRLAGYLRQSEPQLVERY
FTRMDLGDNEAGLRYEDGVLVELLAPGSRRLYWKGQTEQRLERIDLTQDYRLSAALVAQLHQPNLRGRALAG
LDAVLLVQVPAFQVGVLKVDGALAGLLQAGQYGFWRYNRQVSVELVDTRIQALEVSGQEILTRDKVSLRLNL
AANWRYNDVLTAFSRLSKPLEYLYRELQLGLRAAVGTRTLDELLENKQSIDEAVSAHLAAKLEDSGLEVSGL
GVRDIILPGEMKTLLAQVVEAEKAAQANVIRRREETSATRSLLNTAKVMEENPTALRLKELETLERVAERID
RISVFGGLDQVLNGLVTLKQA*
AnnotationID:1801GeneID:1792
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 10:10:33
Gene Name:
Confidence Code:3
GeneProduct:putative stomatin/prohibitin
Cell Localization:()
Synonyms:PA4582
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01145,smart00244
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK81312.1|AE007835_1 (AE007835) Membrane protease subunit, stomatin/prohibitin homolog
           [Clostridium acetobutylicum]
          Length = 365

 Score =  187 bits (474), Expect = 1e-46
 Identities = 119/366 (32%), Positives = 204/366 (55%), Gaps = 20/366 (5%)






 
Structural Features:
pfam01145, Band_7, SPFH domain / Band 7 family. 
Prohibitin family members.
CD-Length = 174 residues,  98.9% aligned
Score = 92.6 bits (230), Expect = 2e-19
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

smart00244, PHB, prohibitin homologues
CD-Length = 160 residues,  98.8% aligned
Score = 64.6 bits (157), Expect = 4e-11
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 4/160 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3587




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20734




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31636




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1792_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1792
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3161
                           PA4582_tr
                           translation of PA4582
                           381
                           98.95
                           99.47
                           0
                           1870.0
     

     
     
98187
                           gb|AAG07970.1|AE004872_1
                           (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           381
                           98.95
                           99.47
                           0
                           1870.0
     

     
     
98188
                           gb|AAM43496.1|
                           (AE012509) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           383
                           46.47
                           64.22
                           12
                           815.0
     

     
     
98189
                           gb|AAM38800.1|
                           (AE012045) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           381
                           44.09
                           63.25
                           7
                           805.0
     

     
     
98191
                           dbj|BAA04562.1|
                           (D17710) orfX [Anabaena variabilis]
                           381
                           38.05
                           54.33
                           88
                           682.0
     

     






      

          
GC ORFID: 44794How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4582Glimmer Score: 

          
Start: 4667575Stop: 4668720

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4582 translation of PA4582Homolog Bit Score 724.0

          
Other Homologs:  t_PA4582 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATGCTGAAGCGCTTTATCGTGAAGAAGAACGAACGCGGCCTGCTGTACTCCGAAGGCGACTTCCTC 
GCCGTGCTCGAACCGGGCACCTACCGCCGCTTCGATCCGTACGACCGCCTGAGCCTGGAAAGCTTCAGCCTG 
AACACCCCGCAGTTCGAACACCGCCTGGCCGGCTACCTGCGGCAGAGCGAACCGCAACTGGTGGAGCGCTAT 
TTCACCCGGATGGACCTGGGCGACAACGAGGCCGGCCTGCGCTACGAGGACGGCGTGCTGGTGGAGCTGCTC 
GCACCGGGCAGCCGCCGACTGTACTGGAAAGGCCAGACCGAGCAGCGCCTGGAGCGCATCGACCTGACCCAG 
GACTATCGATTGTCCGCCGCGCTGGTCGCCCAGTTGCACCAGCCGAACCTGCGCGGCCGGGCCCTGGCGGGC 
CTGGACGCAGTGTTGCTGGTCCAGGTGCCGGCGTTCCAGGTCGGCGTGCTCAAGGTCGACGGCGCCCTTGCC 
GGCCTGCTGCAAGCCGGACAATACGGTTTCTGGCGCTACAACCGGCAAGTCAGCGTGGAACTGGTCGACACC 
CGTATCCAGGCGCTGGAGGTCAGCGGCCAGGAGATCCTCACCCGCGACAAGGTCAGCCTGCGCCTGAACCTC 
GCCGCCAACTGGCGCTACAACGACGTACTCACCGCCTTCTCGCGGCTGAGCAAGCCGCTGGAGTACCTGTAC 
CGCGAGCTGCAGCTCGGCCTGCGAGCGGCAGTGGGCACCCGCACCCTCGACGAACTGCTGGAGAACAAGCAG 
TCGATCGACGAAGCGGTCAGCGCCCACCTGGCCGCCAAGCTGGAAGACAGCGGCCTGGAAGTGAGCGGCCTG 
GGCGTGCGCGACATCATCCTCCCGGGCGAAATGAAGACCCTGCTGGCGCAGGTGGTGGAGGCGGAGAAGGCG 
GCCCAGGCCAATGTGATCCGCCGCCGCGAGGAAACCTCGGCGACCCGCTCGCTGCTGAATACCGCGAAGGTC 
ATGGAGGAAAACCCGACCGCGCTGCGTCTGAAGGAACTGGAAACCCTGGAGCGGGTGGCCGAGCGCATCGAC 
CGGATTTCGGTATTCGGTGGCCTGGACCAGGTATTGAACGGACTGGTCACGCTGAAGCAGGCCTGA