ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1790

TrivialName: PA14_07140

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_07140

PAO1 Ortholog Locus: PA0549

Sequence Length: 1065

Protein Length: 354

Start: 618132

Stop: 619196

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03938.1|AE004491_5 (AE004491) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 349/354 (98%), Positives = 349/354 (98%)

Sequence:

ATGCACACGCTCTACTGGCGGGACCTCGAAAGCCCCGCCAATGGCGAATGGCTGGGCCTCGCGGTCCAGGTG
GAGGGCGCCCATCGGGCGCCCTCTTTCCTTCATCTGCAATCCGGCGGCCAGGCCCGCATTCGCCTGATGCGT
GGCGATCAGCCGCTGCTCTGGGCCACCCAGTTGCCGTACCACGATGGCATCTGGCTGGTGAAGAGCCTGGTC
GCGGCGAGCCCGGCGCAGGCCAGCGTGCCGCCCATCGACTCGCCGACCCTGGAAGCCTTGCGCGGCCTGCGC
GGCGAGGCCCGCTACAAGGCCTGGAGCCGCTATTTCGTCGAGGCCCTGCGTGCCAGCCCGGGCAGTTGCCTG
GAGGCCGGGCGCTGGTTGCTGCGCCTGTCGCTCGCCGAGCAGGCGCCCGCCTGGCAGCCGCCGCAGAGCCAC
GATTCGCGCGAACGGGTGCTGGAACGCTGGCGCTACCGCAGCGTCGGGCGCGATGCTCTGTTGCCGGACTGG
CGCTTCTATAGCCTGGAGAAGGTCCTCGACGACGACTGGGTGCAGTGGCTCGACTGGTGGGGGCGCGACAAC
GACGCCCTGATCGCCCTGCGCCGGGTCGAGGATGACGAGGGGCGGGTCAAGTGGTGGCGCAAGAAGGCCCGC
GAAGGCGAGCTGCCGCCGGTGCTGGCGCTGCGCCTGAACTGCCTGGATGCCTGCGTGATCCTCGACGGCCAC
TGCCGGCTGCGCGCCGGCCTGCTGGAGAACGTCGCGCCGGAGATCCTGGTGCTCTGCGCCTACGACGAGCAG
CCGATGCCGGTGGATACGGCGCAGCGCGAACGGGTGCTGCAATCGCTGGCGCAGCGGGTCGACGCGCCGGTG
CGCCGTGGACGTCGGCCGCTGGATAGCGAACAGCTCAACCAGGTGCTGCTGCGCCTGTTCGACGACCGTCCC
TGGCCGCGAGTGCTGACCCGTGCCCGCGCGGTGCTGAAGGAAGAGCAGTGGTGCGCGGAAGTGCGCGACTGG
CTGACCGCCCGCGAGCGCCTGGACGCGTTGGAGCCGATCATCCGTCGCGTCGAGTAG

Translation:

MHTLYWRDLESPANGEWLGLAVQVEGAHRAPSFLHLQSGGQARIRLMRGDQPLLWATQLPYHDGIWLVKSLV
AASPAQASVPPIDSPTLEALRGLRGEARYKAWSRYFVEALRASPGSCLEAGRWLLRLSLAEQAPAWQPPQSH
DSRERVLERWRYRSVGRDALLPDWRFYSLEKVLDDDWVQWLDWWGRDNDALIALRRVEDDEGRVKWWRKKAR
EGELPPVLALRLNCLDACVILDGHCRLRAGLLENVAPEILVLCAYDEQPMPVDTAQRERVLQSLAQRVDAPV
RRGRRPLDSEQLNQVLLRLFDDRPWPRVLTRARAVLKEEQWCAEVRDWLTARERLDALEPIIRRVE*

AnnotationID:1799 GeneID:1790

AnnotatorUID: diggins

Modification Date/Time: 2005-03-28 18:06:18

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0549

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:3583

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20730

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1790

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3154 PA0549_tr translation of PA0549 354 98.58 98.58 0 1872.0

97994 gb|AAG03938.1|AE004491_5 (AE004491) hypothetical protein PA0549 [Pseudomonas aeruginosa PAO1] 354 98.58 98.58 0 1872.0

GC ORFID: `44792`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0549`	Glimmer Score:
Start: `6419474`	Stop: `6420538`
Length: `1065`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0549 translation of PA0549`	Homolog Bit Score `725.0`
Other Homologs: `t_PA0549 (ORF: GLIMMER)`
GC ORF Sequence
ATGCACACGCTCTACTGGCGGGACCTCGAAAGCCCCGCCAATGGCGAATGGCTGGGCCTCGCGGTCCAGGTG GAGGGCGCCCATCGGGCGCCCTCTTTCCTTCATCTGCAATCCGGCGGCCAGGCCCGCATTCGCCTGATGCGT GGCGATCAGCCGCTGCTCTGGGCCACCCAGTTGCCGTACCACGATGGCATCTGGCTGGTGAAGAGCCTGGTC GCGGCGAGCCCGGCGCAGGCCAGCGTGCCGCCCATCGACTCGCCGACCCTGGAAGCCTTGCGCGGCCTGCGC GGCGAGGCCCGCTACAAGGCCTGGAGCCGCTATTTCGTCGAGGCCCTGCGTGCCAGCCCGGGCAGTTGCCTG GAGGCCGGGCGCTGGTTGCTGCGCCTGTCGCTCGCCGAGCAGGCGCCCGCCTGGCAGCCGCCGCAGAGCCAC GATTCGCGCGAACGGGTGCTGGAACGCTGGCGCTACCGCAGCGTCGGGCGCGATGCTCTGTTGCCGGACTGG CGCTTCTATAGCCTGGAGAAGGTCCTCGACGACGACTGGGTGCAGTGGCTCGACTGGTGGGGGCGCGACAAC GACGCCCTGATCGCCCTGCGCCGGGTCGAGGATGACGAGGGGCGGGTCAAGTGGTGGCGCAAGAAGGCCCGC GAAGGCGAGCTGCCGCCGGTGCTGGCGCTGCGCCTGAACTGCCTGGATGCCTGCGTGATCCTCGACGGCCAC TGCCGGCTGCGCGCCGGCCTGCTGGAGAACGTCGCGCCGGAGATCCTGGTGCTCTGCGCCTACGACGAGCAG CCGATGCCGGTGGATACGGCGCAGCGCGAACGGGTGCTGCAATCGCTGGCGCAGCGGGTCGACGCGCCGGTG CGCCGTGGACGTCGGCCGCTGGATAGCGAACAGCTCAACCAGGTGCTGCTGCGCCTGTTCGACGACCGTCCC TGGCCGCGAGTGCTGACCCGTGCCCGCGCGGTGCTGAAGGAAGAGCAGTGGTGCGCGGAAGTGCGCGACTGG CTGACCGCCCGCGAGCGCCTGGACGCGTTGGAGCCGATCATCCGTCGCGTCGAGTAG