ViewGene
Locus Name:
GeneID:
Location:

GeneID:179
TrivialName: PA14_60550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60550
PAO1 Ortholog Locus:PA4576
Sequence Length:2454
Protein Length:817
Start: 5397973
Stop: 5395520
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07964.1|AE004871_4 (AE004871) probable ATP-dependent protease [Pseudomonas aeruginosa PAO1]
Identities = 815/817 (99%), Positives = 816/817 (99%)
Sequence:
ATGCCCGATTCCGTCGCTGCCGGCCTGCGCCTGGCGCCAGAAGAACTGACCCGCCCGTTCGCTCCCGAGCAA
TTCGCCTTCGACACCACCGATGACCTGGAGCCCTTCCGCGGCGTGCTGGGCCAGGAGCGTGCGGTCGAGGCG
CTGCAGTTCGGTGTGGCGATGCCGCGTCCGGGTTACAACGTATTCGTCATGGGCGAGCCGGGGACCGGACGC
TTCTCCTTCGTCAAACGCTATCTGCAAGCCGAGGGCAAGCGCGTCGCCACGCCCTCCGACTGGGTCTACCTG
AACAATTTCGACGAGCCGCGCGAACCTCGGGTGATCGAGCTGCCGCCGGGCAGCGCGACCGAGTTCAGCGCC
GACATCGACCGTCTGATCGACAACCTGATGTCGACCTTCCCGGCGGTCTTCGAGCATCCGGCCTACCAGCAG
AAGAAGAACGCCGTCGACCGCGCTTTCAACCAGCGCTACGACCGCGCCCTGGACTCGGTGGAGCGGCGCGCC
CTGGAGAAGGACGTGGCGCTGTACCGCGACAGCGCCAACGTCGCCTTCACCCCGATGAAGGACGGCAAGGCC
CTCGATGAGGCCGAATTCGCCCAGTTGCCCGAAGCCGAGCGCGAGCGTTTCCACAAGGATATCGCCGCCCTC
GAGGAGTACCTCAACGAGGAACTGGCGAGCCTGCCGCAGTGGAAGCGCGAGTCGAGCAACCAGTTGCGCGAG
CTCAACGAGGAAACCATCACCCTGGCCCTGCAGCCCCTGCTGGCGCCTCTGGTGGAGAAGTACAACAACAAC
CCGGGCGTCTGCGCCTACCTGCAGGCGATGCAACTGAACCTGCTGAAGACCGTGGTCGACCAACTGGTCGAC
GACAGCCGCACCGACGCCCAGCGCAAGCAAGGGCTGATCGAGCAGTACGCGCCGAACCAGGCCATCGTCCAC
CACGCGACCAGCGGCGCGCCGGTGGTGTTCGAGTCGCACCCGACCTACGACAACCTGTTCGGCCGCATCGAG
TACAGCTCGGACCAGGGGGCGCTCTACACCAGCTACCGGCAGTTGCGTCCGGGGGCGCTGCACCGGGCCAAC
GGCGGCTTCCTGATCCTGGAAGCGGAAAAGATGCTGGGCGAGCCGTTCGTCTGGGACGCGCTCAAGCGTGCC
CTGCAGTCGCGCCAGTTGAAGATGGAGTCGCCGCTGGCCGAACTCGGCCGCCTGGCTGCGGTTTCCCTGACC
CCCCAGGTGATCCCGCTGCAACTGAAGGTGATCATCATCGGCTCGCGGCAGATCTACTACACCCTGCAGGAC
CTCGATCCGGACTTCCAGGAGATGTTCCGGGTGCTGGTGGACTTCGACGAGGACATCCCGCTGGGCGAGGAC
AGCCTCGAACAGTTCGCCCAGTTGCTCAAGACGCGCACCTCGGAAGAGGGCATGGCGCCCCTCAGCGGCGCG
GCGGTGGCGCGACTGGCGACCTACAGCGCGCGCCTGGCCGAGCACCAGGGGCGGCTTTCGGCACGGATCGGC
GACCTGTTCCAGTTGGTCAGCGAAGCCGATTTCATCCGTCAGCTGGCGAACGAGGAGGTGATCCAGCTCGGC
CACATCGAGCGTGCCCTCAAGGCCAAGCAGACCCGCACCGGACGAGTGTCGGCGCGGATCCTCGACGACATG
CTGGCGGGGATCATCCTGATCGACACCGCTGGCGCCGCGGTCGGCAAGTGCAACGGACTGACCGTGCTGGAG
GTGGGCGACTCGGTGTTCGGCGTGCCGGCGCGGATTTCCGCGACCGTCTATCCGGGCAGCAGCGGCATCGTC
GACATCGAGCGCGAGGTCAACCTCGGCCAGCCGATCCACTCCAAGGGCGTGATGATCCTCACCGGCTACCTG
GGTAGCCGCTACGCCCAGGAGTTCCCCCTGGAAATCTCCGCCAGCATCGCCCTGGAACAATCCTACGGCTAC
GTGGACGGCGACAGCGCCTCGCTCGGCGAGGTCTGCACGCTGATCTCAGCACTGTCGCGGACGCCCTTGAAG
CAGTGCTTCGCCATTACCGGCTCGATCAACCAGTTCGGCGAGGTGCAGGCGGTCGGCGGCGTCAACGAGAAG
ATCGAGGGCTTCTTCCGCCTCTGCGAAGCGCGCGGCCTGACCGGCGAGCAGGGCGTGATCATCCCGCGCGCC
AACGTCACCACCCTGATGCTGGACGAGCGCGTATTGCAGGCGGTGCGCGCCGGGCAGTTCCACGTCTACGCG
GTGCGTGAGGTGGACGAGGCGCTGGCGCTGCTGGTGGGCAAGCCGGTCGGTGCCCAGGACGAGAGGGGACGC
TTCCCGAAAGGCAGCGTGAACGATCTGGTCGTGGCGCGCTTGCAGGAGATATCCGAACTCGGCATGGAAGAG
GACGACAAGGAAAAGGACAAGCCGGCGGAGAAAGAGACCGTCGCGGCGAAGGACAAGGCCGCGGCGAAGAAG
GACTGA
Translation:
MPDSVAAGLRLAPEELTRPFAPEQFAFDTTDDLEPFRGVLGQERAVEALQFGVAMPRPGYNVFVMGEPGTGR
FSFVKRYLQAEGKRVATPSDWVYLNNFDEPREPRVIELPPGSATEFSADIDRLIDNLMSTFPAVFEHPAYQQ
KKNAVDRAFNQRYDRALDSVERRALEKDVALYRDSANVAFTPMKDGKALDEAEFAQLPEAERERFHKDIAAL
EEYLNEELASLPQWKRESSNQLRELNEETITLALQPLLAPLVEKYNNNPGVCAYLQAMQLNLLKTVVDQLVD
DSRTDAQRKQGLIEQYAPNQAIVHHATSGAPVVFESHPTYDNLFGRIEYSSDQGALYTSYRQLRPGALHRAN
GGFLILEAEKMLGEPFVWDALKRALQSRQLKMESPLAELGRLAAVSLTPQVIPLQLKVIIIGSRQIYYTLQD
LDPDFQEMFRVLVDFDEDIPLGEDSLEQFAQLLKTRTSEEGMAPLSGAAVARLATYSARLAEHQGRLSARIG
DLFQLVSEADFIRQLANEEVIQLGHIERALKAKQTRTGRVSARILDDMLAGIILIDTAGAAVGKCNGLTVLE
VGDSVFGVPARISATVYPGSSGIVDIEREVNLGQPIHSKGVMILTGYLGSRYAQEFPLEISASIALEQSYGY
VDGDSASLGEVCTLISALSRTPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGVIIPRA
NVTTLMLDERVLQAVRAGQFHVYAVREVDEALALLVGKPVGAQDERGRFPKGSVNDLVVARLQEISELGMEE
DDKEKDKPAEKETVAAKDKAAAKKD*
AnnotationID:189GeneID:179
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-dependent protease
Cell Localization:()
Synonyms:PA4576
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1067
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58031.1| (AE016872) ATP-dependent protease, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 811

 Score = 1315 bits (3403), Expect = 0.0
 Identities = 658/797 (82%), Positives = 727/797 (91%)

>gb|AAN66305.1|AE016259_3 (AE016776) ATP-dependent protease, putative [Pseudomonas putida
           KT2440]
          Length = 812

 Score = 1301 bits (3368), Expect = 0.0
 Identities = 657/807 (81%), Positives = 726/807 (89%)

>gb|AAC74041.1| (AE000197) putative ATP-dependent protease [Escherichia coli K12]
          Length = 586

 Score =  249 bits (636), Expect = 5e-65
 Identities = 154/410 (37%), Positives = 236/410 (57%), Gaps = 13/410 (3%)








 
Structural Features:
COG1067, LonB, Predicted ATP-dependent protease 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 647 residues, 100.0% aligned
Score =  548 bits (1413), Expect = 2e-156
Identities = 232/753 (30%), Positives = 351/753 (46%), Gaps = 109/753 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:361




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17503




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31640




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:179_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:179
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
316
                           PA4576_tr
                           translation of PA4576
                           817
                           99.75
                           99.87
                           0
                           4120.0
     

     
     
20857
                           gb|AAG07964.1|AE004871_4
                           (AE004871) probable ATP-dependent protease [Pseudomonas aeruginosa PAO1]
                           817
                           99.75
                           99.87
                           0
                           4120.0
     

     
     
20858
                           gb|AAO58031.1|
                           (AE016872) ATP-dependent protease, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           817
                           80.90
                           89.59
                           6
                           3401.0
     

     
     
20859
                           gb|AAN66305.1|AE016259_3
                           (AE016776) ATP-dependent protease, putative [Pseudomonas putida KT2440]
                           817
                           80.53
                           88.98
                           5
                           3368.0
     

     
     
20860
                           gb|AAR35806.1|
                           (AE017215) ATP-dependent protease, putative [Geobacter sulfurreducens PCA]
                           828
                           40.21
                           60.14
                           18
                           1607.0
     

     






      

          
GC ORFID: 43181How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4576Glimmer Score: 

          
Start: 4661653Stop: 4659200

          
Length: 2454


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4576 translation of PA4576Homolog Bit Score 1591.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5414 (ORF: BLASTX 1328.0), t_PA4576 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATTCCGTCGCTGCCGGCCTGCGCCTGGCGCCAGAAGAACTGACCCGCCCGTTCGCTCCCGAGCAA 
TTCGCCTTCGACACCACCGATGACCTGGAGCCCTTCCGCGGCGTGCTGGGCCAGGAGCGTGCGGTCGAGGCG 
CTGCAGTTCGGTGTGGCGATGCCGCGTCCGGGTTACAACGTATTCGTCATGGGCGAGCCGGGGACCGGACGC 
TTCTCCTTCGTCAAACGCTATCTGCAAGCCGAGGGCAAGCGCGTCGCCACGCCCTCCGACTGGGTCTACCTG 
AACAATTTCGACGAGCCGCGCGAACCTCGGGTGATCGAGCTGCCGCCGGGCAGCGCGACCGAGTTCAGCGCC 
GACATCGACCGTCTGATCGACAACCTGATGTCGACCTTCCCGGCGGTCTTCGAGCATCCGGCCTACCAGCAG 
AAGAAGAACGCCGTCGACCGCGCTTTCAACCAGCGCTACGACCGCGCCCTGGACTCGGTGGAGCGGCGCGCC 
CTGGAGAAGGACGTGGCGCTGTACCGCGACAGCGCCAACGTCGCCTTCACCCCGATGAAGGACGGCAAGGCC 
CTCGATGAGGCCGAATTCGCCCAGTTGCCCGAAGCCGAGCGCGAGCGTTTCCACAAGGATATCGCCGCCCTC 
GAGGAGTACCTCAACGAGGAACTGGCGAGCCTGCCGCAGTGGAAGCGCGAGTCGAGCAACCAGTTGCGCGAG 
CTCAACGAGGAAACCATCACCCTGGCCCTGCAGCCCCTGCTGGCGCCTCTGGTGGAGAAGTACAACAACAAC 
CCGGGCGTCTGCGCCTACCTGCAGGCGATGCAACTGAACCTGCTGAAGACCGTGGTCGACCAACTGGTCGAC 
GACAGCCGCACCGACGCCCAGCGCAAGCAAGGGCTGATCGAGCAGTACGCGCCGAACCAGGCCATCGTCCAC 
CACGCGACCAGCGGCGCGCCGGTGGTGTTCGAGTCGCACCCGACCTACGACAACCTGTTCGGCCGCATCGAG 
TACAGCTCGGACCAGGGGGCGCTCTACACCAGCTACCGGCAGTTGCGTCCGGGGGCGCTGCACCGGGCCAAC 
GGCGGCTTCCTGATCCTGGAAGCGGAAAAGATGCTGGGCGAGCCGTTCGTCTGGGACGCGCTCAAGCGTGCC 
CTGCAGTCGCGCCAGTTGAAGATGGAGTCGCCGCTGGCCGAACTCGGCCGCCTGGCTGCGGTTTCCCTGACC 
CCCCAGGTGATCCCGCTGCAACTGAAGGTGATCATCATCGGCTCGCGGCAGATCTACTACACCCTGCAGGAC 
CTCGATCCGGACTTCCAGGAGATGTTCCGGGTGCTGGTGGACTTCGACGAGGACATCCCGCTGGGCGAGGAC 
AGCCTCGAACAGTTCGCCCAGTTGCTCAAGACGCGCACCTCGGAAGAGGGCATGGCGCCCCTCAGCGGCGCG 
GCGGTGGCGCGACTGGCGACCTACAGCGCGCGCCTGGCCGAGCACCAGGGGCGGCTTTCGGCACGGATCGGC 
GACCTGTTCCAGTTGGTCAGCGAAGCCGATTTCATCCGTCAGCTGGCGAACGAGGAGGTGATCCAGCTCGGC 
CACATCGAGCGTGCCCTCAAGGCCAAGCAGACCCGCACCGGACGAGTGTCGGCGCGGATCCTCGACGACATG 
CTGGCGGGGATCATCCTGATCGACACCGCTGGCGCCGCGGTCGGCAAGTGCAACGGACTGACCGTGCTGGAG 
GTGGGCGACTCGGTGTTCGGCGTGCCGGCGCGGATTTCCGCGACCGTCTATCCGGGCAGCAGCGGCATCGTC 
GACATCGAGCGCGAGGTCAACCTCGGCCAGCCGATCCACTCCAAGGGCGTGATGATCCTCACCGGCTACCTG 
GGTAGCCGCTACGCCCAGGAGTTCCCCCTGGAAATCTCCGCCAGCATCGCCCTGGAACAATCCTACGGCTAC 
GTGGACGGCGACAGCGCCTCGCTCGGCGAGGTCTGCACGCTGATCTCAGCACTGTCGCGGACGCCCTTGAAG 
CAGTGCTTCGCCATTACCGGCTCGATCAACCAGTTCGGCGAGGTGCAGGCGGTCGGCGGCGTCAACGAGAAG 
ATCGAGGGCTTCTTCCGCCTCTGCGAAGCGCGCGGCCTGACCGGCGAGCAGGGCGTGATCATCCCGCGCGCC 
AACGTCACCACCCTGATGCTGGACGAGCGCGTATTGCAGGCGGTGCGCGCCGGGCAGTTCCACGTCTACGCG 
GTGCGTGAGGTGGACGAGGCGCTGGCGCTGCTGGTGGGCAAGCCGGTCGGTGCCCAGGACGAGAGGGGACGC 
TTCCCGAAAGGCAGCGTGAACGATCTGGTCGTGGCGCGCTTGCAGGAGATATCCGAACTCGGCATGGAAGAG 
GACGACAAGGAAAAGGACAAGCCGGCGGAGAAAGAGACCGTCGCGGCGAAGGACAAGGCCGCGGCGAAGAAG 
GACTGA