ViewGene
Locus Name:
GeneID:
Location:

GeneID:1789
TrivialName: PA14_01940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01940
PAO1 Ortholog Locus:PA0156
Sequence Length:1152
Protein Length:383
Start: 176167
Stop: 177318
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03546.1|AE004453_9 (AE004453) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 378/383 (98%), Positives = 379/383 (98%)
Sequence:
ATGTCAGACGCCAGAGGCGCTTTTCATTCCAAAGGTCGCTGGTCGCGGATGGCGCTGCCCGCCATCCTGTGC
GCCAGCCTGCTTGTCGGTTGCGGCGCCGAGCCGCCCGCCGAGGAACACGTCCGTGTGCTGGCGCAGACGGTG
AAGATGGCCGAGTTCGCCTCGGCCACCTCGATCACCGGCGACATCCAGGCACGGGTACAGGCCGACCAGTCG
TTCCGTGTCGGCGGCAAGATCGTCGAGCGCCTGGTCGATGTCGGCGACCACGTCGCGGCTGGCCAGGTGCTG
GCGCGGCTCGACCCGCAGGACCAGCGCAGCAACGTGGAGAACGCCCAGGCGGCGGTCGCCGCGCAGCAGGCG
CAGTCGAAGCTCGCCGACCTCAACTACCAGCGGCAGAAGGCGCTGCTGCCCAAGGGCTACACCAGCCAGAGC
GAGTACGACCAGGCGCTGGCCTCGGTGCGCAGCGCGCAGAGTTCGCTGAAGGCCGCCCAGGCGCAGTTGGCC
AACGCCCGCGACCTGCTTTCCTATACCGAGCTGCGTGCCTCCGACGCCGGGGTCATCACCGCCCGCCAGGCC
GAGGTCGGCCAGGTGGTGCAGGCCACCGTGCCGATCTTCACCCTGGCCCGCGACGGCGAGCGCGACGCGGTG
TTCAACGTCTACGAGTCGTTGTTCAGCCACGATGTCGACGGCCAGCGGATCACCGTCAGCCTGCTCGGCAAG
CCGGAAGTCACCGCCAGCGGCAAGGTCCGCGAGATCACCCCGACGGTGGACGAGCGCAGCGGTACGCTGAAG
GTCAAGGTCGGCCTCGACTCGGTGCCGGCGGAAATGAGCCTCGGCAGCGTGGTCAACGCCAGCGTCGCCGCG
CCGGCCGCGCACAGCGTGGTGCTGCCCTGGTCGGCGCTGTCCAAGGTCGGCGAGCAGCCGGCGGTCTGGTTG
CTCGATCAGGAAAGCAAGGTGCGCCTGCAACCGGTGCGGGTGGCACGCTACGCCAGCGAGAAGGTGGTCATC
GACGGTGGCCTGGAGGCGGGCCAGACAGTGGTCACGGTGGGCGGCCAACTGCTCCATCCGGGCCAGGTGGTC
GAGGTGGCCCAGCCGCCGCAGCCGACCCAGAGCACCGCCAGCCGCGACGCCGTGGGCGGAGGCCAGCCATGA
Translation:
MSDARGAFHSKGRWSRMALPAILCASLLVGCGAEPPAEEHVRVLAQTVKMAEFASATSITGDIQARVQADQS
FRVGGKIVERLVDVGDHVAAGQVLARLDPQDQRSNVENAQAAVAAQQAQSKLADLNYQRQKALLPKGYTSQS
EYDQALASVRSAQSSLKAAQAQLANARDLLSYTELRASDAGVITARQAEVGQVVQATVPIFTLARDGERDAV
FNVYESLFSHDVDGQRITVSLLGKPEVTASGKVREITPTVDERSGTLKVKVGLDSVPAEMSLGSVVNASVAA
PAAHSVVLPWSALSKVGEQPAVWLLDQESKVRLQPVRVARYASEKVVIDGGLEAGQTVVTVGGQLLHPGQVV
EVAQPPQPTQSTASRDAVGGGQP*
AnnotationID:1798GeneID:1789
AnnotatorUID: diggins
Modification Date/Time: 2004-07-28 19:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative RND efflux membrane fusion protein precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative HlyD family secretion protein
Functional Category Confidence Code:5
COGs:COG0845
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58619.1| (AE016874) efflux transporter, RND family, MFP subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 372

 Score =  387 bits (993), Expect = e-107
 Identities = 212/354 (59%), Positives = 263/354 (74%), Gaps = 7/354 (1%)

>gb|AAN70740.1|AE016717_8 (AE016793) HlyD family secretion protein [Pseudomonas putida
           KT2440]
          Length = 362

 Score =  358 bits (918), Expect = 4e-98
 Identities = 197/346 (56%), Positives = 246/346 (71%), Gaps = 4/346 (1%)

>dbj|BAB51957.1| (AP003006) RND efflux membrane fusion protein [Mesorhizobium loti]
          Length = 352

 Score =  317 bits (813), Expect = 6e-86
 Identities = 171/346 (49%), Positives = 237/346 (68%), Gaps = 3/346 (0%)








 
Structural Features:
COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]








   
Genomic Context:






   
Comment:


















    ReferenceID:3581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20728




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33528




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1789_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1789
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3153
                           PA0156_tr
                           translation of PA0156
                           383
                           98.69
                           98.95
                           0
                           1871.0
     

     
     
97983
                           gb|AAG03546.1|AE004453_9
                           (AE004453) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
                           383
                           98.69
                           98.95
                           0
                           1871.0
     

     
     
97984
                           gb|AAO58619.1|
                           (AE016874) efflux transporter, RND family, MFP subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           398
                           54.52
                           67.33
                           41
                           997.0
     

     
     
97985
                           gb|AAN70740.1|AE016717_8
                           (AE016793) HlyD family secretion protein [Pseudomonas putida KT2440]
                           391
                           52.42
                           65.21
                           37
                           922.0
     

     
     
97986
                           gb|AAO56778.1|
                           (AE016867) efflux transporter, RND family, MFP subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           409
                           44.74
                           59.16
                           40
                           821.0
     

     






      

          
GC ORFID: 44791How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0156Glimmer Score: 

          
Start: 5977506Stop: 5978657

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0156 translation of PA0156Homolog Bit Score 725.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3257 (ORF: BLASTX 387.0), psyr_15may02_Scaffold11_revised_gene1931 (ORF: BLASTX 323.0), t_PA0156 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGACGCCAGAGGCGCTTTTCATTCCAAAGGTCGCTGGTCGCGGATGGCGCTGCCCGCCATCCTGTGC 
GCCAGCCTGCTTGTCGGTTGCGGCGCCGAGCCGCCCGCCGAGGAACACGTCCGTGTGCTGGCGCAGACGGTG 
AAGATGGCCGAGTTCGCCTCGGCCACCTCGATCACCGGCGACATCCAGGCACGGGTACAGGCCGACCAGTCG 
TTCCGTGTCGGCGGCAAGATCGTCGAGCGCCTGGTCGATGTCGGCGACCACGTCGCGGCTGGCCAGGTGCTG 
GCGCGGCTCGACCCGCAGGACCAGCGCAGCAACGTGGAGAACGCCCAGGCGGCGGTCGCCGCGCAGCAGGCG 
CAGTCGAAGCTCGCCGACCTCAACTACCAGCGGCAGAAGGCGCTGCTGCCCAAGGGCTACACCAGCCAGAGC 
GAGTACGACCAGGCGCTGGCCTCGGTGCGCAGCGCGCAGAGTTCGCTGAAGGCCGCCCAGGCGCAGTTGGCC 
AACGCCCGCGACCTGCTTTCCTATACCGAGCTGCGTGCCTCCGACGCCGGGGTCATCACCGCCCGCCAGGCC 
GAGGTCGGCCAGGTGGTGCAGGCCACCGTGCCGATCTTCACCCTGGCCCGCGACGGCGAGCGCGACGCGGTG 
TTCAACGTCTACGAGTCGTTGTTCAGCCACGATGTCGACGGCCAGCGGATCACCGTCAGCCTGCTCGGCAAG 
CCGGAAGTCACCGCCAGCGGCAAGGTCCGCGAGATCACCCCGACGGTGGACGAGCGCAGCGGTACGCTGAAG 
GTCAAGGTCGGCCTCGACTCGGTGCCGGCGGAAATGAGCCTCGGCAGCGTGGTCAACGCCAGCGTCGCCGCG 
CCGGCCGCGCACAGCGTGGTGCTGCCCTGGTCGGCGCTGTCCAAGGTCGGCGAGCAGCCGGCGGTCTGGTTG 
CTCGATCAGGAAAGCAAGGTGCGCCTGCAACCGGTGCGGGTGGCACGCTACGCCAGCGAGAAGGTGGTCATC 
GACGGTGGCCTGGAGGCGGGCCAGACAGTGGTCACGGTGGGCGGCCAACTGCTCCATCCGGGCCAGGTGGTC 
GAGGTGGCCCAGCCGCCGCAGCCGACCCAGAGCACCGCCAGCCGCGACGCCGTGGGCGGAGGCCAGCCATGA