ViewGene
Locus Name:
GeneID:
Location:

GeneID:1788
TrivialName: PA14_01080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01080
PAO1 Ortholog Locus:PA0089
Sequence Length:1047
Protein Length:348
Start: 104835
Stop: 105881
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03479.1|AE004447_12 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 348/348 (100%), Positives = 348/348 (100%)
Sequence:
ATGGCAGGCGAAGCCGGGCAGCCGTCCGAACCTCTGAACCTGCTCGCCGGGATGGCGGCGGCGCCCTGGGAT
TACGACTTCTTCCAGGCGCTGCGGCGCATCGAGTGCGAGTCGCCGCAACTGCCGCGCCTTGGTCATTCGGTG
CGGCTGGCGGACGACCCGCTGCGTCTCGGGCAGAAGCCCGACTGCACCTTCGCGCCCTCGACCCTGGCCTCG
GTGAGCCAGGCCGGCACCGCTGCGGTGCCGCGCCTGGACCAGTTCTTCTTCGGCCTCACCGGCCCCAACGGG
CCGCTGCCGCTGCACCTCACCGAATACGCCCGAGAACGCCAGCGCAACGTCAACGACGCGACCTTCAAGCGC
TTCATGGACGTCTTCCACCACCGCCTGCTGACCCTGTTCTACCGGGCCTGGGCCGAGGCGCGGCCGGAGATC
AGCCACGACCGGATCGACGACGACTACTGGTCGGCGCGTCTCGCCGCGCTCTCCGGGCGCGGCATGCCGAGC
CTGCGGGGGCGCGAGCCGCTGGCGGACACCGCACGCTACTACTACACCGGCCACCTCGCCGCGCAGACCCGC
TACCCGGACGGCCTGCGGGTGATCCTCGCGGAGTATTTCGAGGTCCCGGTGGCGGTCGAGGAATACGTCGGC
CAATGGCTGGAGCTGCCCGAGCGCAGCCGCCTCGGCGTCGACTCGACGAGCCTGGGCATGGACGTCTGCCTG
GGCACCCACGTCTGGGACCGCCAGCACAAGTTCCGCCTGCGCCTGGGGCCGCTGGACCTCGATCAATACCAG
CGCTTCCTGCCCGACGGCGACCACTTCGTCGAGCTGGCCGCCTGGGTCGCCGAATACCTGGGCGAGGAGCTG
GACTGGGACGTCAACCTGGTCTTGCAACGCCACGAAGTACCCCCGCTGGGCCTGCAGGGCGGCGGGCGGCTC
GGTTTCAACACCTGGCTGGGCGATCCCGGCCAGGACGCCAGGGATCTACTGCTGGCCCGCCAGTACGCCACT
GCGCGGCCGCACGAGCACAAGGAGAAGGAACATGAGTGA
Translation:
MAGEAGQPSEPLNLLAGMAAAPWDYDFFQALRRIECESPQLPRLGHSVRLADDPLRLGQKPDCTFAPSTLAS
VSQAGTAAVPRLDQFFFGLTGPNGPLPLHLTEYARERQRNVNDATFKRFMDVFHHRLLTLFYRAWAEARPEI
SHDRIDDDYWSARLAALSGRGMPSLRGREPLADTARYYYTGHLAAQTRYPDGLRVILAEYFEVPVAVEEYVG
QWLELPERSRLGVDSTSLGMDVCLGTHVWDRQHKFRLRLGPLDLDQYQRFLPDGDHFVELAAWVAEYLGEEL
DWDVNLVLQRHEVPPLGLQGGGRLGFNTWLGDPGQDARDLLLARQYATARPHEHKEKEHE*
AnnotationID:1797GeneID:1788
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0089
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20726




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33437




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1788_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1788
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3152
                           PA0089_tr
                           translation of PA0089
                           348
                           99.99
                           99.99
                           0
                           1872.0
     

     
     
97978
                           gb|AAG03479.1|AE004447_12
                           (AE004447) hypothetical protein PA0089 [Pseudomonas aeruginosa PAO1]
                           348
                           99.99
                           99.99
                           0
                           1872.0
     

     
     
97979
                           gb|AAM38976.1|
                           (AE012064) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           360
                           42.77
                           53.05
                           26
                           689.0
     

     
     
97980
                           emb|CAE31306.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           366
                           41.80
                           55.19
                           20
                           654.0
     

     
     
97981
                           emb|CAE40130.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           366
                           41.53
                           54.37
                           20
                           642.0
     

     






      

          
GC ORFID: 44790How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0089Glimmer Score: 

          
Start: 5906174Stop: 5907220

          
Length: 1047


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0089 translation of PA0089Homolog Bit Score 725.0

          
Other Homologs:  t_PA0089 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGGCGAAGCCGGGCAGCCGTCCGAACCTCTGAACCTGCTCGCCGGGATGGCGGCGGCGCCCTGGGAT 
TACGACTTCTTCCAGGCGCTGCGGCGCATCGAGTGCGAGTCGCCGCAACTGCCGCGCCTTGGTCATTCGGTG 
CGGCTGGCGGACGACCCGCTGCGTCTCGGGCAGAAGCCCGACTGCACCTTCGCGCCCTCGACCCTGGCCTCG 
GTGAGCCAGGCCGGCACCGCTGCGGTGCCGCGCCTGGACCAGTTCTTCTTCGGCCTCACCGGCCCCAACGGG 
CCGCTGCCGCTGCACCTCACCGAATACGCCCGAGAACGCCAGCGCAACGTCAACGACGCGACCTTCAAGCGC 
TTCATGGACGTCTTCCACCACCGCCTGCTGACCCTGTTCTACCGGGCCTGGGCCGAGGCGCGGCCGGAGATC 
AGCCACGACCGGATCGACGACGACTACTGGTCGGCGCGTCTCGCCGCGCTCTCCGGGCGCGGCATGCCGAGC 
CTGCGGGGGCGCGAGCCGCTGGCGGACACCGCACGCTACTACTACACCGGCCACCTCGCCGCGCAGACCCGC 
TACCCGGACGGCCTGCGGGTGATCCTCGCGGAGTATTTCGAGGTCCCGGTGGCGGTCGAGGAATACGTCGGC 
CAATGGCTGGAGCTGCCCGAGCGCAGCCGCCTCGGCGTCGACTCGACGAGCCTGGGCATGGACGTCTGCCTG 
GGCACCCACGTCTGGGACCGCCAGCACAAGTTCCGCCTGCGCCTGGGGCCGCTGGACCTCGATCAATACCAG 
CGCTTCCTGCCCGACGGCGACCACTTCGTCGAGCTGGCCGCCTGGGTCGCCGAATACCTGGGCGAGGAGCTG 
GACTGGGACGTCAACCTGGTCTTGCAACGCCACGAAGTACCCCCGCTGGGCCTGCAGGGCGGCGGGCGGCTC 
GGTTTCAACACCTGGCTGGGCGATCCCGGCCAGGACGCCAGGGATCTACTGCTGGCCCGCCAGTACGCCACT 
GCGCGGCCGCACGAGCACAAGGAGAAGGAACATGAGTGA