ViewGene
Locus Name:
GeneID:
Location:

GeneID:1783
TrivialName: PA14_69430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69430
PAO1 Ortholog Locus:PA5258
Sequence Length:1131
Protein Length:376
Start: 6192929
Stop: 6191799
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08643.1|AE004938_5 (AE004938) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 376/376 (100%), Positives = 376/376 (100%)
Sequence:
GTGAGCGAAGCAGTCACTCCCCAAGACGACGCAAGAACTTCCACTTCCACCCCTTCTCCCGTTGCACCCGAT
GCATCCAGGCGTTCCGGTACCGCCACCGGCCTGGCGTTGCTCGCCCTGCTGGTTGGCGTGGCGGGACTCGGC
GCGGGTGGCTGGAGCTTCTGGCAGGTCCAGCAGTTGCAGGGCACCGAGCGCGACCAACTGGCGCAGCTGGAA
GATGCCCGTGGCAAGACCGAATCCCTGGCCCAGCGTAACCAGCAACTGGCTGCCCGCCTGGACGCTTTGCCC
ACTGCGGACGAACTGGAGGCCCGGCGACGCCTTGTGGTGGAGCTGCAGGGCGACCAGCAGCATCTCAGCGAG
CAACTGAAGAAGGTCCTCGGCCAGAGCCGCCAGCAATGGCGACTGGCCGAGGCCGAACACCTGCTGCGCCTG
GCCAGCCTGCGCCTGTCCGCCTTGCAGGACGTGGGCAGCGCCACCGAACTGGTGCAGGGCGCCGATGACATC
CTGCGCGCGCAGAACGATCCCGGCGCCTATGCCGCCCGCGCCAAGCTGGCGGCCAGCCTCGAGGCCCTGCGC
GCGTTGCCGGAGCCGGACCGTACCGGGCTGTTCGTGCAACTGGCGGCGTTGCGCGAGCAGGTCAACCAGTTG
CAACCGCTCACGCCGACCTTCAAGGAAGGCGAAAGCGGTGCCAGCAATGTCGCCTGGGGCGACGGCAACAGC
ACCTGGGAGCTGTGGTGGGAGAAGATCTCGCGCTACATCCGCATCGATTTCAATGCCGGCCAGGACATTCGT
CCGCTGCTGGCCGGCGAGCAATTGGCGCAGGTGCGCCTGACCATCGGCCTGGCCCTGGAGCAAGCCCAGTGG
GCGGCGCTGAATGGCAAGCAGGAAGTCTACGAGCAGGCGCTGAAGCAGGCCCAGGACGTGCTGGACGGCTAT
TTCAACGTAGAGCTGGCCGACAGCCGCGCGTTGAAGTTGCGTATCGATGAGTTGGCGAAGCAGCCGGTCACC
GTGCAGGTCCCTGACCTCGCACCGGCCCTGAGCGCCTTGCAGGCCTACGTGTCGCGCCGCGAGGCCGCTGGC
AACCTGGTGCCCGAGGCGCAGGCGGCTCCGGCCACGGAGGGCCGTCCATGA
Translation:
MSEAVTPQDDARTSTSTPSPVAPDASRRSGTATGLALLALLVGVAGLGAGGWSFWQVQQLQGTERDQLAQLE
DARGKTESLAQRNQQLAARLDALPTADELEARRRLVVELQGDQQHLSEQLKKVLGQSRQQWRLAEAEHLLRL
ASLRLSALQDVGSATELVQGADDILRAQNDPGAYAARAKLAASLEALRALPEPDRTGLFVQLAALREQVNQL
QPLTPTFKEGESGASNVAWGDGNSTWELWWEKISRYIRIDFNAGQDIRPLLAGEQLAQVRLTIGLALEQAQW
AALNGKQEVYEQALKQAQDVLDGYFNVELADSRALKLRIDELAKQPVTVQVPDLAPALSALQAYVSRREAAG
NLVPEAQAAPATEGRP*
AnnotationID:1792GeneID:1783
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:17
Gene Name:
Confidence Code:3
GeneProduct:putative uroporphyrin-III C-methyltransferase
Cell Localization:()
Synonyms:hemX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2959,pfam04375
Secondary Functional Category(ies):coenyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53684.1| (AE016856) uroporphyrin-III C-methyltransferase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 376

 Score =  381 bits (978), Expect = e-105
 Identities = 205/378 (54%), Positives = 265/378 (70%), Gaps = 12/378 (3%)

>gb|AAN65821.1|AE016210_9 (AE016774) uroporphyrin-III C-methyltransferase, putative
           [Pseudomonas putida KT2440]
          Length = 375

 Score =  360 bits (925), Expect = 6e-99
 Identities = 191/357 (53%), Positives = 256/357 (71%), Gaps = 3/357 (0%)








 
Structural Features:
COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
CD-Length = 391 residues,  96.4% aligned
Score =  301 bits (772), Expect = 7e-83
Identities = 147/383 (38%), Positives = 198/383 (51%), Gaps = 13/383 (3%)

pfam04375, HemX, HemX.
CD-Length = 371 residues, 100.0% aligned
Score =  289 bits (740), Expect = 4e-79
Identities = 135/396 (34%), Positives = 184/396 (46%), Gaps = 50/396 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14429




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20716




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34824




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1783_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1783
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3147
                           PA5258_tr
                           translation of PA5258
                           376
                           99.99
                           99.99
                           0
                           1875.0
     

     
     
97810
                           gb|AAG08643.1|AE004938_5
                           (AE004938) hypothetical protein PA5258 [Pseudomonas aeruginosa PAO1]
                           376
                           99.73
                           99.99
                           0
                           1872.0
     

     
     
97811
                           gb|AAO53684.1|
                           (AE016856) uroporphyrin-III C-methyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           53.64
                           68.75
                           16
                           991.0
     

     
     
97812
                           gb|AAN65821.1|AE016210_9
                           (AE016774) uroporphyrin-III C-methyltransferase, putative [Pseudomonas putida KT2440]
                           386
                           51.03
                           68.39
                           21
                           937.0
     

     






      

          
GC ORFID: 44785How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5258Glimmer Score: 

          
Start: 5456616Stop: 5455486

          
Length: 1131


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5258 translation of PA5258Homolog Bit Score 726.0

          
Other Homologs:  t_PA5258 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAAGCAGTCACTCCCCAAGACGACGCAAGAACTTCCACTTCCACCCCTTCTCCCGTTGCACCCGAT 
GCATCCAGGCGTTCCGGTACCGCCACCGGCCTGGCGTTGCTCGCCCTGCTGGTTGGCGTGGCGGGACTCGGC 
GCGGGTGGCTGGAGCTTCTGGCAGGTCCAGCAGTTGCAGGGCACCGAGCGCGACCAACTGGCGCAGCTGGAA 
GATGCCCGTGGCAAGACCGAATCCCTGGCCCAGCGTAACCAGCAACTGGCTGCCCGCCTGGACGCTTTGCCC 
ACTGCGGACGAACTGGAGGCCCGGCGACGCCTTGTGGTGGAGCTGCAGGGCGACCAGCAGCATCTCAGCGAG 
CAACTGAAGAAGGTCCTCGGCCAGAGCCGCCAGCAATGGCGACTGGCCGAGGCCGAACACCTGCTGCGCCTG 
GCCAGCCTGCGCCTGTCCGCCTTGCAGGACGTGGGCAGCGCCACCGAACTGGTGCAGGGCGCCGATGACATC 
CTGCGCGCGCAGAACGATCCCGGCGCCTATGCCGCCCGCGCCAAGCTGGCGGCCAGCCTCGAGGCCCTGCGC 
GCGTTGCCGGAGCCGGACCGTACCGGGCTGTTCGTGCAACTGGCGGCGTTGCGCGAGCAGGTCAACCAGTTG 
CAACCGCTCACGCCGACCTTCAAGGAAGGCGAAAGCGGTGCCAGCAATGTCGCCTGGGGCGACGGCAACAGC 
ACCTGGGAGCTGTGGTGGGAGAAGATCTCGCGCTACATCCGCATCGATTTCAATGCCGGCCAGGACATTCGT 
CCGCTGCTGGCCGGCGAGCAATTGGCGCAGGTGCGCCTGACCATCGGCCTGGCCCTGGAGCAAGCCCAGTGG 
GCGGCGCTGAATGGCAAGCAGGAAGTCTACGAGCAGGCGCTGAAGCAGGCCCAGGACGTGCTGGACGGCTAT 
TTCAACGTAGAGCTGGCCGACAGCCGCGCGTTGAAGTTGCGTATCGATGAGTTGGCGAAGCAGCCGGTCACC 
GTGCAGGTCCCTGACCTCGCACCGGCCCTGAGCGCCTTGCAGGCCTACGTGTCGCGCCGCGAGGCCGCTGGC 
AACCTGGTGCCCGAGGCGCAGGCGGCTCCGGCCACGGAGGGCCGTCCATGA