ViewGene

Locus Name:
GeneID:
Location:

GeneID:1782
TrivialName: PA14_62450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62450
PAO1 Ortholog Locus:PA4720
Sequence Length:1092
Protein Length:363
Start: 5571120
Stop: 5572211
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08106.1|AE004885_11 (AE004885) tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 359/363 (98%), Positives = 362/363 (99%)
Sequence:
ATGAGCCGTCCACAGTTCGACCCCAGCGCCTACGCCGCGCAACTGGAAGACAAGAAGTCCCGCCTCGCCGGA
TTGCTGGCCCCGTTCGCGGCACCCGCGCCGGAGATCTTCGAGTCGCCGCGCGAGCATTACCGGCTGCGCGCC
GAATTCCGCTTGTGGCGGGAAACCGGCAACGAGAAGCGTCACTACGCGATGTTCGAGCAGGGCGACAAGCAC
ACGCCGATCCTGATCGAGGATTTCCCCATCGCCAGCCGCCGCATCAACGAACTGATGCCGCGCCTGAAGGCG
GCCTGGGCCGACCCGGCGCTGGGCTTCAAGCTGTTCCAGGTGGAGTTTCTCACCACCCTGGCCGGCGACGCG
CTGATCACCCTCTGCTACCACCGGCCGATCGACGACGCCTGGCGACAGGCAGCGGAAAAGCTCGCGGCGGAA
CTGGGCGTGAACCTGGTCGGACGTTCGCGCGGCAAGCGTATCGTCGTCGGACGCGACTATGTGGAGGAGGAA
CTGTCGGTCGCCGGCCGGCGCTTCCGCTACCGCCAGCCCGAGGGGGCTTTCACCCAGCCCAACGGCGAGGTC
AACCAGAAGATGCTCGGCTGGGCCTACGAGGCGCTCGGCCAGCGCGACGACGACCTGCTCGAACTGTACTGC
GGCAACGGCAACTTCACCCTGCCCCTGGCCACCCGGGTACGCAAGGTGCTGGCCACCGAGATCAGCAAGTCC
TCGGTCAATGCGGCGCTGGCCAACCTGGCCGACAACGCGGTGGACAACGTCAGCCTGGTGCGCCTGTCGGCC
GAAGAGCTGACCCAGGCGCTGAACGAGGTTCGCCCGTTCCGCCGCCTGGCCGACATCGATCTGAAGAGCTAC
GCCTTCGGCAATGTCTTCGTCGATCCGCCACGAGCCGGCATGGATCCGGACACCTGCGAGCTGACCCGGCGC
TTCGAGCGCATCCTGTACATTTCGTGCAACCCGGAAACCCTGGCGCAGAACATCGCCCAACTGCACGACACG
CACCGGATCAGCCGCTGCGCGCTGTTCGACCAGTTCCCCTACACCCACCACATGGAAAGCGGCGTCCTGCTC
GAACGCCGCTGA
Translation:
MSRPQFDPSAYAAQLEDKKSRLAGLLAPFAAPAPEIFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGDKH
TPILIEDFPIASRRINELMPRLKAAWADPALGFKLFQVEFLTTLAGDALITLCYHRPIDDAWRQAAEKLAAE
LGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGAFTQPNGEVNQKMLGWAYEALGQRDDDLLELYC
GNGNFTLPLATRVRKVLATEISKSSVNAALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSY
AFGNVFVDPPRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLL
ERR*
AnnotationID:1791GeneID:1782
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 20:08:11
Gene Name:trmA
Confidence Code:2
GeneProduct:tRNA (uracil-5-)-methyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05958,COG2265
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:2.1.1.35
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70227.1|AE016662_3 (AE016791) tRNA (uracil-5-)-methyltransferase [Pseudomonas putida
           KT2440]
          Length = 361

 Score =  577 bits (1487), Expect = e-164
 Identities = 285/359 (79%), Positives = 314/359 (87%), Gaps = 3/359 (0%)

>dbj|BAA88495.1| (AB023289) (uracil-5-)methyltransferase [Pseudomonas fluorescens]
          Length = 363

 Score =  573 bits (1478), Expect = e-163
 Identities = 283/364 (77%), Positives = 319/364 (87%), Gaps = 3/364 (0%)

>gb|AAM83915.1|AE013632_3 (AE013632) tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM]
          Length = 367

 Score =  363 bits (933), Expect = e-100
 Identities = 189/360 (52%), Positives = 246/360 (68%), Gaps = 9/360 (2%)
Structural Features:
pfam05958, tRNA_U5-meth_tr, 
tRNA (Uracil-5-)-methyltransferase.
CD-Length = 352 residues, 100.0% aligned
Score =  591 bits (1524), Expect = 5e-170
Identities = 238/355 (67%), Positives = 275/355 (77%), Gaps = 4/355 (1%)

COG2265, TrmA, SAM-dependent methyltransferases related to 
tRNA (uracil-5-)-methyltransferase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 432 residues,  82.9% aligned
Score =  279 bits (715), Expect = 4e-76
Identities = 116/373 (31%), Positives = 162/373 (43%), Gaps = 32/373 (8%)
Genomic Context:
Comment:
ReferenceID:3567
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20714
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37635
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1782_cdd.html
URL:
ReferenceID:37746
Author/Investigator(s): Ny T, Lindstrom HR, Hagervall TG, Bjork GR.
Title: Purification of transfer RNA (m5U54)-methyltransferase from Escherichia coli. Association with RNA.
PubMed: 2461858
MedLine:
Source:
Eur J Biochem. 1988 Nov 15;177(3):467-75.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2461858
ReferenceID:37747
Author/Investigator(s): Bjork GR.
Title: Transductional mapping of gene trmA responsible for the production of 5-methyluridine in transfer ribonucleic acid of Escherichia coli.
PubMed: 1100617
MedLine:
Source:
J Bacteriol. 1975 Oct;124(1):92-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1100617
ReferenceID:37748
Author/Investigator(s): Persson BC, Gustafsson C, Berg DE, Bjork GR.
Title: The gene for a tRNA modifying enzyme, m5U54-methyltransferase, is essential for viability in Escherichia coli.
PubMed: 1373891
MedLine:
Source:
Proc Natl Acad Sci U S A. 1992 May 1;89(9):3995-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1373891
Homologs By Global Alignment
Gene ID:1782

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3146 PA4720_tr translation of PA4720 363 98.89 99.72 0 1874.0
97779 gb|AAG08106.1|AE004885_11 (AE004885) tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1] 363 98.89 99.72 0 1874.0
97780 gb|AAN70227.1|AE016662_3 (AE016791) tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440] 364 78.84 86.81 4 1488.0
97781 dbj|BAA88495.1| (AB023289) (uracil-5-)methyltransferase [Pseudomonas fluorescens] 365 77.53 87.39 4 1482.0
97782 gb|AAO58100.1| (AE016872) tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] 364 76.92 86.81 4 1466.0
GC ORFID: 44784How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4720Glimmer Score:
Start: 4834800Stop: 4835891
Length: 1092
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4720 translation of PA4720Homolog Bit Score 726.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5657 (ORF: BLASTX 565.0), t_PA4720 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGTCCACAGTTCGACCCCAGCGCCTACGCCGCGCAACTGGAAGACAAGAAGTCCCGCCTCGCCGGA
TTGCTGGCCCCGTTCGCGGCACCCGCGCCGGAGATCTTCGAGTCGCCGCGCGAGCATTACCGGCTGCGCGCC
GAATTCCGCTTGTGGCGGGAAACCGGCAACGAGAAGCGTCACTACGCGATGTTCGAGCAGGGCGACAAGCAC
ACGCCGATCCTGATCGAGGATTTCCCCATCGCCAGCCGCCGCATCAACGAACTGATGCCGCGCCTGAAGGCG
GCCTGGGCCGACCCGGCGCTGGGCTTCAAGCTGTTCCAGGTGGAGTTTCTCACCACCCTGGCCGGCGACGCG
CTGATCACCCTCTGCTACCACCGGCCGATCGACGACGCCTGGCGACAGGCAGCGGAAAAGCTCGCGGCGGAA
CTGGGCGTGAACCTGGTCGGACGTTCGCGCGGCAAGCGTATCGTCGTCGGACGCGACTATGTGGAGGAGGAA
CTGTCGGTCGCCGGCCGGCGCTTCCGCTACCGCCAGCCCGAGGGGGCTTTCACCCAGCCCAACGGCGAGGTC
AACCAGAAGATGCTCGGCTGGGCCTACGAGGCGCTCGGCCAGCGCGACGACGACCTGCTCGAACTGTACTGC
GGCAACGGCAACTTCACCCTGCCCCTGGCCACCCGGGTACGCAAGGTGCTGGCCACCGAGATCAGCAAGTCC
TCGGTCAATGCGGCGCTGGCCAACCTGGCCGACAACGCGGTGGACAACGTCAGCCTGGTGCGCCTGTCGGCC
GAAGAGCTGACCCAGGCGCTGAACGAGGTTCGCCCGTTCCGCCGCCTGGCCGACATCGATCTGAAGAGCTAC
GCCTTCGGCAATGTCTTCGTCGATCCGCCACGAGCCGGCATGGATCCGGACACCTGCGAGCTGACCCGGCGC
TTCGAGCGCATCCTGTACATTTCGTGCAACCCGGAAACCCTGGCGCAGAACATCGCCCAACTGCACGACACG
CACCGGATCAGCCGCTGCGCGCTGTTCGACCAGTTCCCCTACACCCACCACATGGAAAGCGGCGTCCTGCTC
GAACGCCGCTGA