ViewGene

Locus Name:
GeneID:
Location:

GeneID:1781
TrivialName: PA14_60270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60270
PAO1 Ortholog Locus:PA4548
Sequence Length:1095
Protein Length:364
Start: 5369929
Stop: 5368835
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07936.1|AE004868_7 (AE004868) probable D-amino acid oxidase [Pseudomonas aeruginosa PAO1]
Identities = 360/364 (98%), Positives = 360/364 (98%)
Sequence:
GTGAGTAGAGATGTAGTAGTGGTAGGCGCTGGCGTCATCGGCCTGTTGACCGCCCGGGAGCTGGCGCTCGCC
GGACTGCGGGTGACCCTGGTGGAGCGGGGCGAGAGTGGGCGTGAGGCATCCTGGGCGGGAGGCGGGATCGTC
TCGCCGCTCTATCCGTGGCGCTACAGCCCGGCGGTGACCGCCCTGGCGCACTGGTCGCAGGACTTCTACCCG
GCCCTGGGGCAGCGTTTGCTCGACGAGACCGGGCTCGATCCCGAGGTCCATACCGTTGGCCTGTACTGGCTG
GACCTGGACGACCAGACCGAGGCACTGCAGTGGGCACGCAACCACACCCGGCCGTTGAAGGAAGTGCCGATC
GAGGAGGCCTACGCGGCGGTGCCCGGGCTGGGCGCAGGCTTCCAGCGGGCGGTCTACATGTCGGGCGTGGCC
AATGTGCGCAATCCTCGCCTGGCGCGCTCATTGCGGGCATCCCTGCAACAATTCGCCAATCTCGAGTTGCAT
GAACAGACGGAGGTGCGCGGCTGGTTGCGCGACGGCGATCGAGTGGTCGGCGTGGCGACCTCGCGTGGCGAG
ATCCGTGGCGACAAGGTGCTGCTGGCGGCAGGCGCCTGGAGCGGCGAGTTGTTGAAGCCGCTTGGCCTGGAA
CTGCCCGTGGTACCGGTGAAAGGTCAGATGATCCTCTACAAGTGCGCGGCGGATTTCCTGCCGCGCATGGTG
CTGGCCAAGGGGCGCTACGCGATTCCGCGGCGCGACGGCCACATCCTGATCGGCAGCACCTTGGAACATTCG
GGCTTCGACAAGACGCCGACCGACGAGGCGCTGGAAAGCCTCAGGGCGTCTGCGGCAGAACTGTTGCCGGAA
CTGGCGGACATGCAGCCGGTGGCCCACTGGGCAGGGTTGCGCCCGGGCTCTCCCGAAGGCATCCCCTATATC
GGTCCGGTGCCTGGCTTCGACGGGCTCTGGCTGAATACCGGGCACTACCGCAACGGGCTGGTCCTGGCACCG
GCGTCGTGCCGTCTGCTGGCGGATCTCATGAGCGGGCGGGAACCGATCATCGACCCGGCCCCCTACGCCCCG
GCTGGTCGCCTCTGA
Translation:
MSRDVVVVGAGVIGLLTARELALAGLRVTLVERGESGREASWAGGGIVSPLYPWRYSPAVTALAHWSQDFYP
ALGQRLLDETGLDPEVHTVGLYWLDLDDQTEALQWARNHTRPLKEVPIEEAYAAVPGLGAGFQRAVYMSGVA
NVRNPRLARSLRASLQQFANLELHEQTEVRGWLRDGDRVVGVATSRGEIRGDKVLLAAGAWSGELLKPLGLE
LPVVPVKGQMILYKCAADFLPRMVLAKGRYAIPRRDGHILIGSTLEHSGFDKTPTDEALESLRASAAELLPE
LADMQPVAHWAGLRPGSPEGIPYIGPVPGFDGLWLNTGHYRNGLVLAPASCRLLADLMSGREPIIDPAPYAP
AGRL*
AnnotationID:1790GeneID:1781
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 06:06:07
Gene Name:
Confidence Code:3
GeneProduct:putative Glycine/D-amino acid oxidases
Cell Localization:()
Synonyms:PA4548
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66238.1|AE016252_6 (AE016776) oxidoreductase, FAD-binding [Pseudomonas putida KT2440]
          Length = 365

 Score =  536 bits (1381), Expect = e-152
 Identities = 259/364 (71%), Positives = 298/364 (81%)

>emb|CAD84561.1| (BX321858) NAD binding site:D-amino acid oxidase [Nitrosomonas
           europaea ATCC 19718]
          Length = 368

 Score =  264 bits (675), Expect = 6e-70
 Identities = 147/362 (40%), Positives = 213/362 (58%), Gaps = 6/362 (1%)
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  97.2% aligned
Score =  196 bits (499), Expect = 6e-51
Identities = 128/377 (33%), Positives = 171/377 (45%), Gaps = 18/377 (4%)

Genomic Context:
Comment:
ReferenceID:14427
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20712
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31660
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1781_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1781

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3145 PA4548_tr translation of PA4548 364 98.90 98.90 0 1875.0
97772 gb|AAG07936.1|AE004868_7 (AE004868) probable D-amino acid oxidase [Pseudomonas aeruginosa PAO1] 364 98.62 98.90 0 1872.0
97773 gb|AAP81270.1| (AY273871) putative D-amino acid oxidase [Pseudomonas aeruginosa] 364 98.07 98.35 6 1870.0
97774 gb|AAB39269.1| (L48934) homolgous to D-amino acid dehydrogenase enzyme [Pseudomonas aeruginosa] 364 96.97 98.07 0 1848.0
97775 gb|AAN66238.1|AE016252_6 (AE016776) oxidoreductase, FAD-binding [Pseudomonas putida KT2440] 365 70.68 81.64 1 1377.0
GC ORFID: 44783How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4548Glimmer Score:
Start: 4633608Stop: 4632514
Length: 1095
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4548 translation of PA4548Homolog Bit Score 726.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3545 (ORF: BLASTX 531.0), t_PA4548 (ORF: GLIMMER)
GC ORF Sequence
GTGAGTAGAGATGTAGTAGTGGTAGGCGCTGGCGTCATCGGCCTGTTGACCGCCCGGGAGCTGGCGCTCGCC
GGACTGCGGGTGACCCTGGTGGAGCGGGGCGAGAGTGGGCGTGAGGCATCCTGGGCGGGAGGCGGGATCGTC
TCGCCGCTCTATCCGTGGCGCTACAGCCCGGCGGTGACCGCCCTGGCGCACTGGTCGCAGGACTTCTACCCG
GCCCTGGGGCAGCGTTTGCTCGACGAGACCGGGCTCGATCCCGAGGTCCATACCGTTGGCCTGTACTGGCTG
GACCTGGACGACCAGACCGAGGCACTGCAGTGGGCACGCAACCACACCCGGCCGTTGAAGGAAGTGCCGATC
GAGGAGGCCTACGCGGCGGTGCCCGGGCTGGGCGCAGGCTTCCAGCGGGCGGTCTACATGTCGGGCGTGGCC
AATGTGCGCAATCCTCGCCTGGCGCGCTCATTGCGGGCATCCCTGCAACAATTCGCCAATCTCGAGTTGCAT
GAACAGACGGAGGTGCGCGGCTGGTTGCGCGACGGCGATCGAGTGGTCGGCGTGGCGACCTCGCGTGGCGAG
ATCCGTGGCGACAAGGTGCTGCTGGCGGCAGGCGCCTGGAGCGGCGAGTTGTTGAAGCCGCTTGGCCTGGAA
CTGCCCGTGGTACCGGTGAAAGGTCAGATGATCCTCTACAAGTGCGCGGCGGATTTCCTGCCGCGCATGGTG
CTGGCCAAGGGGCGCTACGCGATTCCGCGGCGCGACGGCCACATCCTGATCGGCAGCACCTTGGAACATTCG
GGCTTCGACAAGACGCCGACCGACGAGGCGCTGGAAAGCCTCAGGGCGTCTGCGGCAGAACTGTTGCCGGAA
CTGGCGGACATGCAGCCGGTGGCCCACTGGGCAGGGTTGCGCCCGGGCTCTCCCGAAGGCATCCCCTATATC
GGTCCGGTGCCTGGCTTCGACGGGCTCTGGCTGAATACCGGGCACTACCGCAACGGGCTGGTCCTGGCACCG
GCGTCGTGCCGTCTGCTGGCGGATCTCATGAGCGGGCGGGAACCGATCATCGACCCGGCCCCCTACGCCCCG
GCTGGTCGCCTCTGA